Wall clock time and date at job start Tue Mar 31 2020 12:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38148 * 125.60452 * 2 1 4 4 C 1.46992 * 125.43596 * 0.02748 * 3 2 1 5 5 O 1.21654 * 119.99734 * 5.37170 * 4 3 2 6 6 N 1.34784 * 119.99979 * 185.36969 * 4 3 2 7 7 C 1.39084 * 119.99705 * 188.83468 * 6 4 3 8 8 C 1.39521 * 119.83636 * 147.94919 * 7 6 4 9 9 C 1.36355 * 120.16507 * 180.29384 * 8 7 6 10 10 C 1.40884 * 119.83037 * 359.45807 * 9 8 7 11 11 C 1.41130 * 120.15887 * 180.27277 * 10 9 8 12 12 H 1.07993 * 119.99844 * 26.41470 * 11 10 9 13 13 C 1.39912 * 119.99617 * 206.41746 * 11 10 9 14 14 N 1.30868 * 120.00175 * 11.74872 * 13 11 10 15 15 Si 1.86800 * 119.99544 * 191.75130 * 13 11 10 16 16 H 1.48493 * 109.47271 * 60.00026 * 15 13 11 17 17 H 1.48507 * 109.46679 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46947 * 299.99622 * 15 13 11 19 19 C 1.40882 * 119.67775 * 0.53693 * 10 9 8 20 20 C 1.36352 * 119.83537 * 359.73496 * 19 10 9 21 21 C 1.35924 * 109.13263 * 180.29246 * 3 2 1 22 22 C 1.41575 * 107.72065 * 359.58267 * 21 3 2 23 23 C 1.40112 * 133.37362 * 180.11676 * 22 21 3 24 24 C 1.36435 * 119.82988 * 180.32776 * 23 22 21 25 25 C 1.38939 * 120.61727 * 359.97438 * 24 23 22 26 26 C 1.37681 * 120.64715 * 0.02562 * 25 24 23 27 27 C 1.37492 * 125.61025 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47388 * 84.02205 * 1 2 3 29 29 H 1.08995 * 109.46648 * 204.02544 * 1 2 3 30 30 H 1.09002 * 109.46708 * 324.01559 * 1 2 3 31 31 H 0.96999 * 119.99613 * 8.82848 * 6 4 3 32 32 H 1.08005 * 119.91965 * 0.02562 * 8 7 6 33 33 H 1.08001 * 120.08271 * 179.72255 * 9 8 7 34 34 H 0.97000 * 119.99882 * 180.02562 * 14 13 11 35 35 H 1.08001 * 120.08450 * 179.71341 * 19 10 9 36 36 H 1.07999 * 119.92349 * 179.97438 * 20 19 10 37 37 H 1.07998 * 126.14494 * 179.73828 * 21 3 2 38 38 H 1.08004 * 120.08470 * 0.30223 * 23 22 21 39 39 H 1.08006 * 119.69179 * 180.02562 * 24 23 22 40 40 H 1.08002 * 119.67654 * 180.02562 * 25 24 23 41 41 H 1.08004 * 120.09019 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2693 1.1232 0.0000 4 6 1.7917 2.5134 0.0006 5 8 0.6021 2.7478 0.0997 6 7 2.6718 3.5284 -0.1087 7 6 2.2471 4.8399 0.0753 8 6 3.1200 5.7823 0.6200 9 6 2.7086 7.0685 0.8089 10 6 1.4023 7.4476 0.4420 11 6 0.9712 8.7783 0.6291 12 1 1.6912 9.5832 0.6364 13 6 -0.3890 9.0547 0.8053 14 7 -1.2318 8.0784 1.0267 15 14 -1.0018 10.8175 0.7245 16 1 -0.6894 11.3895 -0.6097 17 1 -2.4708 10.8412 0.9411 18 1 -0.3327 11.6229 1.7775 19 6 0.5266 6.4904 -0.1074 20 6 0.9501 5.2066 -0.2853 21 6 3.5727 0.7378 -0.0066 22 6 3.6036 -0.6776 -0.0011 23 6 4.6428 -1.6174 -0.0017 24 6 4.3523 -2.9504 -0.0019 25 6 3.0334 -3.3872 -0.0011 26 6 1.9948 -2.4834 -0.0005 27 6 2.2656 -1.1178 -0.0005 28 1 -0.3634 0.1070 -1.0220 29 1 -0.3632 -0.9386 0.4184 30 1 -0.3633 0.8316 0.6038 31 1 3.6014 3.3440 -0.3156 32 1 4.1226 5.4913 0.8966 33 1 3.3840 7.7958 1.2347 34 1 -2.1749 8.2700 1.1485 35 1 -0.4778 6.7727 -0.3867 36 1 0.2798 4.4716 -0.7060 37 1 4.4309 1.3935 -0.0122 38 1 5.6712 -1.2873 -0.0024 39 1 5.1552 -3.6729 -0.0020 40 1 2.8208 -4.4461 -0.0009 41 1 0.9728 -2.8329 0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603950065.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:38 Heat of formation + Delta-G solvation = 54.051206 kcal Electronic energy + Delta-G solvation = -24963.281087 eV Core-core repulsion = 21387.443639 eV Total energy + Delta-G solvation = -3575.837448 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.68928 -39.50998 -37.46298 -36.73149 -34.65194 -33.43565 -32.73339 -30.41838 -29.88873 -29.42593 -28.56032 -26.45363 -25.30733 -23.65102 -21.81266 -21.51731 -21.15508 -20.60916 -19.36178 -17.64027 -17.34023 -16.95475 -16.35012 -15.93127 -15.67977 -15.26692 -14.85870 -14.31249 -14.22809 -14.05254 -13.91544 -13.39988 -13.15756 -13.01717 -12.97060 -12.69921 -12.42292 -12.09155 -11.84971 -11.79368 -11.55440 -11.32259 -11.13188 -11.05278 -11.00556 -10.54730 -10.03049 -9.95809 -9.88303 -9.56835 -9.12061 -8.73182 -8.29800 -7.79376 -7.55135 -7.01569 -6.72404 -4.33685 0.70736 1.50910 2.06172 2.51381 2.73658 3.04905 3.06204 3.08425 3.15353 3.57761 3.71580 3.79566 3.91932 4.50331 4.63389 4.70226 4.78876 4.86423 5.04598 5.24593 5.27303 5.31436 5.48654 5.56807 5.67388 5.70722 5.73792 5.88270 6.11525 6.29433 6.38309 6.46054 6.53663 6.59624 6.74147 6.93050 6.98913 7.02146 7.12020 7.15908 7.25196 7.59215 7.62923 7.91238 8.03507 8.15945 8.27642 8.60340 8.63974 8.86403 8.96615 10.18831 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.034131 B = 0.002461 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.169722 B =11376.249587 C =12108.477392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.450 5.450 3 C 0.041 3.959 4 C 0.562 3.438 5 O -0.527 6.527 6 N -0.630 5.630 7 C -0.010 4.010 8 C -0.103 4.103 9 C -0.213 4.213 10 C 0.104 3.896 11 C -0.456 4.456 12 H 0.077 0.923 13 C 0.071 3.929 14 N -0.793 5.793 15 Si 0.912 3.088 16 H -0.264 1.264 17 H -0.278 1.278 18 H -0.265 1.265 19 C -0.156 4.156 20 C -0.092 4.092 21 C -0.156 4.156 22 C -0.113 4.113 23 C -0.064 4.064 24 C -0.152 4.152 25 C -0.097 4.097 26 C -0.127 4.127 27 C 0.102 3.898 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.398 0.602 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.281 0.719 35 H 0.126 0.874 36 H 0.116 0.884 37 H 0.151 0.849 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.798 -17.795 -2.472 19.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.130 5.130 3 C -0.070 4.070 4 C 0.348 3.652 5 O -0.405 6.405 6 N -0.272 5.272 7 C -0.102 4.102 8 C -0.123 4.123 9 C -0.233 4.233 10 C 0.101 3.899 11 C -0.485 4.485 12 H 0.096 0.904 13 C -0.147 4.147 14 N -0.419 5.419 15 Si 0.737 3.263 16 H -0.188 1.188 17 H -0.203 1.203 18 H -0.190 1.190 19 C -0.176 4.176 20 C -0.112 4.112 21 C -0.182 4.182 22 C -0.118 4.118 23 C -0.083 4.083 24 C -0.171 4.171 25 C -0.116 4.116 26 C -0.148 4.148 27 C -0.007 4.007 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.122 0.878 31 H 0.233 0.767 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.144 0.856 36 H 0.133 0.867 37 H 0.169 0.831 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.287 -17.613 -2.317 18.534 hybrid contribution 0.067 0.598 0.042 0.604 sum 5.354 -17.014 -2.275 17.981 Atomic orbital electron populations 1.22166 0.75775 1.04589 1.04065 1.43893 1.06374 1.03194 1.59538 1.20091 0.90098 0.87958 1.08837 1.17113 0.86359 0.82986 0.78712 1.90762 1.15594 1.84248 1.49922 1.42547 1.11641 1.04992 1.67971 1.17207 0.96650 0.81910 1.14413 1.20038 0.97334 0.94008 1.00954 1.20576 0.98348 0.94811 1.09569 1.17721 0.90722 0.93479 0.87949 1.19539 0.92388 0.93546 1.43032 0.90449 1.25954 0.96881 0.99379 0.92449 1.69817 1.04644 1.33567 1.33848 0.86300 0.77912 0.82191 0.79899 1.18849 1.20327 1.19013 1.21158 1.01245 0.92172 1.02983 1.20792 0.94043 0.96666 0.99682 1.20931 0.94973 0.93883 1.08412 1.18163 0.92429 0.93419 1.07759 1.20380 0.97775 0.92110 0.98046 1.20591 0.96452 0.95477 1.04582 1.20813 0.92221 0.98791 0.99819 1.20037 0.99639 0.89041 1.06056 1.18388 0.89986 0.88342 1.03994 0.90943 0.90388 0.87762 0.76720 0.89042 0.88517 0.90762 0.85632 0.86660 0.83121 0.85889 0.86101 0.85813 0.86298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 10.42 59.85 0.62 1.55 16 2 N -0.45 -6.46 3.22 -117.70 -0.38 -6.84 16 3 C 0.04 0.63 6.81 -82.30 -0.56 0.07 16 4 C 0.56 10.31 7.65 -12.71 -0.10 10.21 16 5 O -0.53 -11.31 11.77 5.23 0.06 -11.25 16 6 N -0.63 -11.21 5.26 -10.84 -0.06 -11.27 16 7 C -0.01 -0.21 6.38 -83.61 -0.53 -0.74 16 8 C -0.10 -2.22 9.89 -39.78 -0.39 -2.62 16 9 C -0.21 -5.09 9.74 -39.26 -0.38 -5.47 16 10 C 0.10 2.76 5.58 -106.80 -0.60 2.16 16 11 C -0.46 -11.95 9.06 -37.86 -0.34 -12.30 16 12 H 0.08 1.93 7.87 -52.49 -0.41 1.51 16 13 C 0.07 1.78 5.25 -17.34 -0.09 1.69 16 14 N -0.79 -20.74 10.71 55.55 0.59 -20.14 16 15 Si 0.91 18.62 29.58 -169.99 -5.03 13.60 16 16 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 17 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 18 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 19 C -0.16 -4.13 8.62 -39.26 -0.34 -4.47 16 20 C -0.09 -2.27 8.68 -39.78 -0.35 -2.61 16 21 C -0.16 -2.04 10.28 -39.14 -0.40 -2.45 16 22 C -0.11 -1.46 6.16 -106.93 -0.66 -2.12 16 23 C -0.06 -0.67 10.06 -39.53 -0.40 -1.07 16 24 C -0.15 -1.39 9.96 -39.97 -0.40 -1.79 16 25 C -0.10 -0.89 10.02 -39.53 -0.40 -1.28 16 26 C -0.13 -1.36 9.89 -39.42 -0.39 -1.75 16 27 C 0.10 1.35 6.81 -83.97 -0.57 0.78 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.73 7.84 -51.93 -0.41 0.32 16 30 H 0.10 1.50 6.48 -51.93 -0.34 1.16 16 31 H 0.40 5.56 7.68 -40.82 -0.31 5.24 16 32 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 33 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 34 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 35 H 0.13 3.47 6.04 -52.49 -0.32 3.15 16 36 H 0.12 2.86 5.82 -52.49 -0.31 2.55 16 37 H 0.15 1.55 7.40 -52.49 -0.39 1.17 16 38 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 39 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 40 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.12 1.03 7.89 -52.48 -0.41 0.62 16 LS Contribution 346.88 15.07 5.23 5.23 Total: -1.00 -30.64 346.88 -10.42 -41.05 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -4.57 Total: 11.82 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -6.27 Total: -22.21 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.16 Total: -38.25 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.06 Total: -11.25 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.64 -10.42 -41.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603950065.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.106 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds