Wall clock time and date at job start Tue Mar 31 2020 12:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38148 * 125.60452 * 2 1 4 4 C 1.46992 * 125.43596 * 0.02748 * 3 2 1 5 5 O 1.21654 * 119.99734 * 5.37170 * 4 3 2 6 6 N 1.34784 * 119.99979 * 185.36969 * 4 3 2 7 7 C 1.39084 * 119.99705 * 188.83468 * 6 4 3 8 8 C 1.39521 * 119.83636 * 147.94919 * 7 6 4 9 9 C 1.36355 * 120.16507 * 180.29384 * 8 7 6 10 10 C 1.40884 * 119.83037 * 359.45807 * 9 8 7 11 11 C 1.41130 * 120.15887 * 180.27277 * 10 9 8 12 12 H 1.07993 * 119.99844 * 26.41470 * 11 10 9 13 13 C 1.39912 * 119.99617 * 206.41746 * 11 10 9 14 14 N 1.30868 * 120.00175 * 11.74872 * 13 11 10 15 15 Si 1.86800 * 119.99544 * 191.75130 * 13 11 10 16 16 H 1.48493 * 109.47271 * 60.00026 * 15 13 11 17 17 H 1.48507 * 109.46679 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46947 * 299.99622 * 15 13 11 19 19 C 1.40882 * 119.67775 * 0.53693 * 10 9 8 20 20 C 1.36352 * 119.83537 * 359.73496 * 19 10 9 21 21 C 1.35924 * 109.13263 * 180.29246 * 3 2 1 22 22 C 1.41575 * 107.72065 * 359.58267 * 21 3 2 23 23 C 1.40112 * 133.37362 * 180.11676 * 22 21 3 24 24 C 1.36435 * 119.82988 * 180.32776 * 23 22 21 25 25 C 1.38939 * 120.61727 * 359.97438 * 24 23 22 26 26 C 1.37681 * 120.64715 * 0.02562 * 25 24 23 27 27 C 1.37492 * 125.61025 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47388 * 84.02205 * 1 2 3 29 29 H 1.08995 * 109.46648 * 204.02544 * 1 2 3 30 30 H 1.09002 * 109.46708 * 324.01559 * 1 2 3 31 31 H 0.96999 * 119.99613 * 8.82848 * 6 4 3 32 32 H 1.08005 * 119.91965 * 0.02562 * 8 7 6 33 33 H 1.08001 * 120.08271 * 179.72255 * 9 8 7 34 34 H 0.97000 * 119.99882 * 180.02562 * 14 13 11 35 35 H 1.08001 * 120.08450 * 179.71341 * 19 10 9 36 36 H 1.07999 * 119.92349 * 179.97438 * 20 19 10 37 37 H 1.07998 * 126.14494 * 179.73828 * 21 3 2 38 38 H 1.08004 * 120.08470 * 0.30223 * 23 22 21 39 39 H 1.08006 * 119.69179 * 180.02562 * 24 23 22 40 40 H 1.08002 * 119.67654 * 180.02562 * 25 24 23 41 41 H 1.08004 * 120.09019 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2693 1.1232 0.0000 4 6 1.7917 2.5134 0.0006 5 8 0.6021 2.7478 0.0997 6 7 2.6718 3.5284 -0.1087 7 6 2.2471 4.8399 0.0753 8 6 3.1200 5.7823 0.6200 9 6 2.7086 7.0685 0.8089 10 6 1.4023 7.4476 0.4420 11 6 0.9712 8.7783 0.6291 12 1 1.6912 9.5832 0.6364 13 6 -0.3890 9.0547 0.8053 14 7 -1.2318 8.0784 1.0267 15 14 -1.0018 10.8175 0.7245 16 1 -0.6894 11.3895 -0.6097 17 1 -2.4708 10.8412 0.9411 18 1 -0.3327 11.6229 1.7775 19 6 0.5266 6.4904 -0.1074 20 6 0.9501 5.2066 -0.2853 21 6 3.5727 0.7378 -0.0066 22 6 3.6036 -0.6776 -0.0011 23 6 4.6428 -1.6174 -0.0017 24 6 4.3523 -2.9504 -0.0019 25 6 3.0334 -3.3872 -0.0011 26 6 1.9948 -2.4834 -0.0005 27 6 2.2656 -1.1178 -0.0005 28 1 -0.3634 0.1070 -1.0220 29 1 -0.3632 -0.9386 0.4184 30 1 -0.3633 0.8316 0.6038 31 1 3.6014 3.3440 -0.3156 32 1 4.1226 5.4913 0.8966 33 1 3.3840 7.7958 1.2347 34 1 -2.1749 8.2700 1.1485 35 1 -0.4778 6.7727 -0.3867 36 1 0.2798 4.4716 -0.7060 37 1 4.4309 1.3935 -0.0122 38 1 5.6712 -1.2873 -0.0024 39 1 5.1552 -3.6729 -0.0020 40 1 2.8208 -4.4461 -0.0009 41 1 0.9728 -2.8329 0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603950065.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:37 Heat of formation + Delta-G solvation = 38.116436 kcal Electronic energy + Delta-G solvation = -24963.972070 eV Core-core repulsion = 21387.443639 eV Total energy + Delta-G solvation = -3576.528432 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.68906 -41.00455 -39.06510 -37.76768 -36.31849 -34.97131 -33.96339 -31.55169 -31.22439 -31.15421 -29.91251 -27.46917 -26.91154 -24.95100 -23.29606 -22.88084 -22.31926 -21.95872 -20.75206 -19.27066 -18.92431 -18.01718 -17.58807 -17.20474 -16.98008 -16.72888 -16.02715 -15.82697 -15.64345 -15.11216 -14.92179 -14.82612 -14.58036 -14.39562 -13.99921 -13.91600 -13.88901 -13.66077 -13.44675 -13.24821 -12.80282 -12.73422 -12.56717 -12.33449 -12.20756 -11.82174 -11.77510 -11.75239 -11.31197 -10.86769 -10.76746 -10.49073 -9.46177 -9.24379 -8.86185 -8.67418 -8.58153 -6.29539 -0.25890 0.68302 0.79044 1.12995 1.18343 1.37975 1.47023 1.50777 1.56343 2.20346 2.24796 2.37718 2.78115 2.97550 3.54232 3.68040 3.74695 3.82718 4.12787 4.27749 4.30831 4.40977 4.43520 4.48289 4.50718 4.61819 4.65699 4.81562 4.87132 4.98885 5.08606 5.12927 5.15362 5.29210 5.39896 5.53373 5.62976 5.70101 5.70423 5.74413 5.87139 6.04937 6.07538 6.10356 6.26052 6.32916 6.62054 6.68768 6.92197 6.98620 7.23633 8.34871 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.034131 B = 0.002461 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.169722 B =11376.249587 C =12108.477392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.462 5.462 3 C 0.000 4.000 4 C 0.563 3.437 5 O -0.567 6.567 6 N -0.623 5.623 7 C 0.006 3.994 8 C -0.097 4.097 9 C -0.220 4.220 10 C 0.071 3.929 11 C -0.490 4.490 12 H 0.083 0.917 13 C 0.026 3.974 14 N -0.833 5.833 15 Si 0.988 3.012 16 H -0.259 1.259 17 H -0.272 1.272 18 H -0.256 1.256 19 C -0.180 4.180 20 C -0.107 4.107 21 C -0.130 4.130 22 C -0.141 4.141 23 C -0.067 4.067 24 C -0.152 4.152 25 C -0.084 4.084 26 C -0.146 4.146 27 C 0.089 3.911 28 H 0.072 0.928 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.420 0.580 32 H 0.138 0.862 33 H 0.113 0.887 34 H 0.286 0.714 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.178 0.822 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.156 0.844 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.595 -20.137 -2.295 22.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.143 5.143 3 C -0.110 4.110 4 C 0.353 3.647 5 O -0.448 6.448 6 N -0.266 5.266 7 C -0.088 4.088 8 C -0.117 4.117 9 C -0.240 4.240 10 C 0.068 3.932 11 C -0.520 4.520 12 H 0.101 0.899 13 C -0.188 4.188 14 N -0.460 5.460 15 Si 0.808 3.192 16 H -0.183 1.183 17 H -0.197 1.197 18 H -0.180 1.180 19 C -0.200 4.200 20 C -0.127 4.127 21 C -0.157 4.157 22 C -0.145 4.145 23 C -0.086 4.086 24 C -0.170 4.170 25 C -0.104 4.104 26 C -0.166 4.166 27 C -0.020 4.020 28 H 0.090 0.910 29 H 0.125 0.875 30 H 0.095 0.905 31 H 0.258 0.742 32 H 0.156 0.844 33 H 0.131 0.869 34 H 0.096 0.904 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.195 0.805 38 H 0.164 0.836 39 H 0.170 0.830 40 H 0.173 0.827 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.134 -19.983 -2.149 21.682 hybrid contribution -0.646 0.942 -0.031 1.143 sum 7.488 -19.041 -2.180 20.576 Atomic orbital electron populations 1.22137 0.75616 1.04940 1.03738 1.43997 1.06715 1.03368 1.60196 1.19698 0.91305 0.86631 1.13377 1.17564 0.85729 0.84320 0.77136 1.90747 1.17446 1.85101 1.51532 1.42369 1.12779 1.03329 1.68165 1.17262 0.95515 0.83848 1.12154 1.20402 0.99116 0.92786 0.99362 1.20862 0.97582 0.96323 1.09235 1.18068 0.92132 0.93965 0.89022 1.19828 0.93515 0.93802 1.44818 0.89916 1.26887 0.96629 1.03890 0.91386 1.69918 1.05077 1.35923 1.35041 0.85163 0.77448 0.76409 0.80131 1.18277 1.19662 1.18034 1.21048 1.00760 0.93356 1.04881 1.20825 0.95592 0.95817 1.00479 1.21306 0.94596 0.94754 1.05054 1.18472 0.93154 0.93598 1.09315 1.20727 0.98321 0.92300 0.97203 1.21043 0.97412 0.95641 1.02941 1.21299 0.91885 1.00174 0.96998 1.20370 1.01229 0.88223 1.06793 1.18843 0.90203 0.88971 1.04024 0.90967 0.87484 0.90541 0.74178 0.84439 0.86872 0.90392 0.88001 0.87712 0.80483 0.83578 0.82996 0.82660 0.84762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.96 10.42 127.77 1.33 3.29 16 2 N -0.46 -13.26 3.22 -526.30 -1.70 -14.96 16 3 C 0.00 -0.01 6.81 39.91 0.27 0.26 16 4 C 0.56 21.12 7.65 86.54 0.66 21.78 16 5 O -0.57 -25.77 11.77 -4.20 -0.05 -25.82 16 6 N -0.62 -21.78 5.26 -306.42 -1.61 -23.39 16 7 C 0.01 0.25 6.38 38.61 0.25 0.49 16 8 C -0.10 -4.04 9.89 22.14 0.22 -3.82 16 9 C -0.22 -10.52 9.74 22.48 0.22 -10.30 16 10 C 0.07 3.90 5.58 -21.27 -0.12 3.78 16 11 C -0.49 -26.67 9.06 23.39 0.21 -26.46 16 12 H 0.08 4.22 7.87 -2.91 -0.02 4.20 16 13 C 0.03 1.33 5.25 85.24 0.45 1.78 16 14 N -0.83 -45.92 10.71 21.82 0.23 -45.68 16 15 Si 0.99 39.09 29.58 68.60 2.03 41.12 16 16 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 17 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 18 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 19 C -0.18 -10.18 8.62 22.48 0.19 -9.99 16 20 C -0.11 -5.56 8.68 22.14 0.19 -5.36 16 21 C -0.13 -3.18 10.28 22.56 0.23 -2.95 16 22 C -0.14 -3.31 6.16 -21.36 -0.13 -3.44 16 23 C -0.07 -1.15 10.06 22.30 0.22 -0.92 16 24 C -0.15 -2.10 9.96 22.02 0.22 -1.88 16 25 C -0.08 -1.20 10.02 22.31 0.22 -0.97 16 26 C -0.15 -2.74 9.89 22.37 0.22 -2.52 16 27 C 0.09 2.21 6.81 39.13 0.27 2.48 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.11 1.99 7.84 -2.39 -0.02 1.97 16 30 H 0.08 2.39 6.48 -2.39 -0.02 2.37 16 31 H 0.42 10.81 7.68 -92.71 -0.71 10.10 16 32 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 33 H 0.11 4.93 8.06 -2.91 -0.02 4.90 16 34 H 0.29 14.38 8.30 -92.71 -0.77 13.61 16 35 H 0.10 6.12 6.04 -2.91 -0.02 6.10 16 36 H 0.11 5.58 5.82 -2.91 -0.02 5.56 16 37 H 0.18 3.09 7.40 -2.91 -0.02 3.07 16 38 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 41 H 0.13 2.00 7.89 -2.91 -0.02 1.98 16 Total: -1.00 -71.58 346.88 4.40 -67.18 By element: Atomic # 1 Polarization: 35.94 SS G_CDS: 0.37 Total: 36.31 kcal Atomic # 6 Polarization: -39.88 SS G_CDS: 5.13 Total: -34.75 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -3.08 Total: -84.03 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.05 Total: -25.82 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -71.58 4.40 -67.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603950065.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.293 kcal (2) G-P(sol) polarization free energy of solvation -71.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds