Wall clock time and date at job start Tue Mar 31 2020 13:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00030 * 2 1 4 4 C 1.53000 * 109.47011 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.47243 * 64.99578 * 4 3 2 6 6 C 1.46494 * 120.00393 * 262.49309 * 5 4 3 7 7 C 1.50699 * 109.46862 * 270.00094 * 6 5 4 8 8 H 1.07990 * 120.00624 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99518 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00384 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99865 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46963 * 59.99821 * 11 9 7 13 13 H 1.48492 * 109.47290 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.46849 * 300.00106 * 11 9 7 15 15 C 1.34779 * 119.99214 * 82.48835 * 5 4 3 16 16 O 1.21658 * 119.99384 * 182.34736 * 15 5 4 17 17 C 1.46985 * 120.00501 * 2.35295 * 15 5 4 18 18 C 1.35888 * 125.44074 * 168.63408 * 17 15 5 19 19 C 1.41527 * 107.73697 * 179.97438 * 18 17 15 20 20 C 1.40850 * 106.99797 * 0.02562 * 19 18 17 21 21 C 1.39173 * 119.53819 * 180.02562 * 20 19 18 22 22 C 1.37708 * 120.00819 * 359.97438 * 21 20 19 23 23 C 1.38849 * 120.68703 * 0.02562 * 22 21 20 24 24 C 1.37727 * 120.44097 * 0.27510 * 23 22 21 25 25 F 1.35099 * 120.17385 * 179.70561 * 24 23 22 26 26 N 1.37517 * 107.37262 * 359.97438 * 20 19 18 27 27 H 0.97003 * 125.61549 * 179.97438 * 26 20 19 28 28 H 1.09001 * 109.47443 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47297 * 300.00382 * 1 2 3 30 30 H 1.09000 * 109.47284 * 60.00156 * 1 2 3 31 31 H 1.09000 * 109.47448 * 60.00189 * 3 2 1 32 32 H 1.09001 * 109.46764 * 299.99811 * 3 2 1 33 33 H 1.08997 * 109.47059 * 305.00422 * 4 3 2 34 34 H 1.09000 * 109.47144 * 184.99875 * 4 3 2 35 35 H 1.09000 * 109.47309 * 29.99732 * 6 5 4 36 36 H 1.08997 * 109.47307 * 149.99361 * 6 5 4 37 37 H 0.96999 * 120.00034 * 180.02562 * 10 9 7 38 38 H 1.08003 * 126.13353 * 0.02562 * 18 17 15 39 39 H 1.08000 * 119.99278 * 179.97438 * 21 20 19 40 40 H 1.07994 * 119.66044 * 180.02562 * 22 21 20 41 41 H 1.08001 * 119.78221 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5642 -1.2528 6 6 4.2636 -0.8714 -1.2974 7 6 5.7154 -1.1031 -0.9660 8 1 6.3592 -0.2648 -0.7448 9 6 6.2218 -2.3853 -0.9464 10 7 5.4379 -3.4063 -1.2162 11 14 8.0216 -2.6725 -0.5364 12 1 8.3082 -2.1526 0.8248 13 1 8.3137 -4.1277 -0.5827 14 1 8.8735 -1.9653 -1.5259 15 6 4.1156 1.3145 -2.3636 16 8 4.4398 0.7922 -3.4134 17 6 3.8767 2.7637 -2.3067 18 6 4.1908 3.6531 -3.2849 19 6 3.7992 4.9386 -2.8409 20 6 3.2397 4.7784 -1.5582 21 6 2.7633 5.8924 -0.8734 22 6 2.8413 7.1405 -1.4500 23 6 3.3919 7.3040 -2.7141 24 6 3.8647 6.2169 -3.4152 25 9 4.3940 6.3814 -4.6473 26 7 3.2964 3.4394 -1.2498 27 1 2.9817 3.0357 -0.4259 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8514 0.5681 0.8409 34 1 3.9785 2.1764 0.0889 35 1 3.6380 -1.3903 -0.5711 36 1 4.0534 -1.2533 -2.2964 37 1 5.7942 -4.3083 -1.2020 38 1 4.6552 3.4206 -4.2319 39 1 2.3325 5.7779 0.1103 40 1 2.4703 8.0012 -0.9134 41 1 3.4453 8.2896 -3.1526 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610485855.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:10 Heat of formation + Delta-G solvation = -33.799042 kcal Electronic energy + Delta-G solvation = -27016.427768 eV Core-core repulsion = 23006.011622 eV Total energy + Delta-G solvation = -4010.416146 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.88165 -41.79738 -39.12067 -37.76588 -36.70309 -35.26530 -32.86722 -31.99544 -30.30318 -29.55357 -28.82828 -27.23708 -26.22023 -24.31908 -23.03626 -22.51966 -22.25764 -20.86406 -19.59404 -18.13402 -17.42795 -16.56220 -16.47411 -16.20729 -15.93395 -15.74569 -15.56284 -15.36083 -15.12851 -15.03887 -14.57934 -14.21398 -13.98457 -13.61636 -13.47936 -13.09706 -13.01111 -12.36867 -12.22163 -12.10189 -11.91200 -11.69338 -11.61468 -11.52479 -11.34349 -11.05393 -10.91914 -10.53010 -10.20504 -9.87261 -9.72889 -9.68882 -9.35110 -8.47600 -8.43303 -7.95141 -7.69529 -6.04884 -4.10357 0.62713 1.30326 2.17226 2.82987 3.31660 3.36506 3.38703 3.52788 3.57927 3.70855 3.78789 4.15633 4.42985 4.51227 4.61693 4.77373 4.92026 4.94411 5.02600 5.06852 5.12311 5.16631 5.29163 5.31135 5.34479 5.37430 5.52800 5.69227 5.79082 5.86990 5.91336 6.07782 6.17297 6.40808 6.51898 6.84862 7.04103 7.10091 7.26432 7.35756 7.48347 7.90565 8.18671 8.21117 8.72760 8.94865 9.54229 11.03102 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013328 B = 0.003953 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.367066 B = 7082.010173 C = 8369.143431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.363 6.363 3 C 0.025 3.975 4 C 0.088 3.912 5 N -0.579 5.579 6 C 0.251 3.749 7 C -0.533 4.533 8 H 0.057 0.943 9 C 0.064 3.936 10 N -0.892 5.892 11 Si 0.898 3.102 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.567 3.433 16 O -0.514 6.514 17 C 0.042 3.958 18 C -0.115 4.115 19 C -0.146 4.146 20 C 0.124 3.876 21 C -0.141 4.141 22 C -0.070 4.070 23 C -0.188 4.188 24 C 0.152 3.848 25 F -0.135 7.135 26 N -0.585 5.585 27 H 0.426 0.574 28 H 0.088 0.912 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.264 0.736 38 H 0.158 0.842 39 H 0.127 0.873 40 H 0.135 0.865 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.157 19.160 4.510 22.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.281 6.281 3 C -0.054 4.054 4 C -0.038 4.038 5 N -0.310 5.310 6 C 0.132 3.868 7 C -0.572 4.572 8 H 0.075 0.925 9 C -0.139 4.139 10 N -0.530 5.530 11 Si 0.726 3.274 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.201 1.201 15 C 0.353 3.647 16 O -0.389 6.389 17 C -0.068 4.068 18 C -0.141 4.141 19 C -0.152 4.152 20 C 0.013 3.987 21 C -0.161 4.161 22 C -0.090 4.090 23 C -0.208 4.208 24 C 0.132 3.868 25 F -0.113 7.113 26 N -0.200 5.200 27 H 0.276 0.724 28 H 0.107 0.893 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.128 0.872 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.176 0.824 39 H 0.145 0.855 40 H 0.153 0.847 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.886 18.273 4.018 21.160 hybrid contribution 0.693 -0.061 0.497 0.855 sum -9.193 18.211 4.515 20.894 Atomic orbital electron populations 1.22771 0.81448 1.03056 0.99418 1.88107 1.19184 1.25709 1.95141 1.23388 0.95235 0.86778 0.99952 1.21961 0.91233 0.99574 0.91013 1.48134 1.63799 1.12168 1.06868 1.19410 0.96021 0.71884 0.99449 1.21400 0.95007 0.92613 1.48175 0.92512 1.24909 0.98023 0.95828 0.95096 1.69928 1.35593 0.98942 1.48533 0.86562 0.84978 0.77072 0.78830 1.20276 1.21141 1.20135 1.17145 0.79329 0.83310 0.84943 1.90842 1.47308 1.71536 1.29227 1.20786 1.03315 0.93607 0.89046 1.20800 1.04105 0.89202 0.99973 1.18123 1.07871 0.93106 0.96100 1.18192 1.00784 0.85075 0.94658 1.20061 1.05234 0.90212 1.00637 1.20588 0.97905 0.96361 0.94151 1.20794 1.05479 0.97837 0.96671 1.17192 0.96851 0.92253 0.80505 1.91489 1.83746 1.96172 1.39934 1.43710 1.52991 1.05229 1.18112 0.72415 0.89316 0.94363 0.94329 0.92366 0.93173 0.87232 0.89722 0.93648 0.93633 0.92612 0.82399 0.85526 0.84729 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.46 16 2 O -0.36 -5.73 10.45 -35.23 -0.37 -6.10 16 3 C 0.02 0.32 4.74 37.16 0.18 0.50 16 4 C 0.09 1.35 5.32 -4.04 -0.02 1.33 16 5 N -0.58 -12.15 2.42 -176.49 -0.43 -12.58 16 6 C 0.25 6.52 5.14 -5.20 -0.03 6.49 16 7 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 10 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 11 Si 0.90 21.79 29.54 -169.99 -5.02 16.76 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 C 0.57 12.15 7.56 -12.72 -0.10 12.05 16 16 O -0.51 -13.10 16.43 5.23 0.09 -13.02 16 17 C 0.04 0.72 6.38 -82.29 -0.52 0.19 16 18 C -0.11 -1.90 10.55 -39.17 -0.41 -2.31 16 19 C -0.15 -2.11 6.14 -106.88 -0.66 -2.77 16 20 C 0.12 1.56 7.25 -83.98 -0.61 0.96 16 21 C -0.14 -1.33 10.06 -39.43 -0.40 -1.72 16 22 C -0.07 -0.59 10.01 -39.55 -0.40 -0.99 16 23 C -0.19 -1.87 10.00 -39.54 -0.40 -2.26 16 24 C 0.15 1.97 7.35 -38.99 -0.29 1.68 16 25 F -0.14 -1.85 17.28 2.25 0.04 -1.81 16 26 N -0.59 -7.78 4.29 -7.36 -0.03 -7.82 16 27 H 0.43 4.75 3.43 -40.82 -0.14 4.61 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.65 6.62 -51.93 -0.34 0.31 16 33 H 0.11 1.74 8.02 -51.93 -0.42 1.33 16 34 H 0.09 1.10 5.13 -51.93 -0.27 0.83 16 35 H 0.05 1.21 7.87 -51.93 -0.41 0.81 16 36 H 0.05 1.35 7.39 -51.93 -0.38 0.96 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 38 H 0.16 2.60 8.06 -52.48 -0.42 2.18 16 39 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 350.74 15.07 5.29 5.29 Total: -1.00 -34.13 350.74 -7.54 -41.67 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -4.89 Total: 2.26 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -2.95 Total: 1.01 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.28 Total: -46.06 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.28 Total: -19.12 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.13 -7.54 -41.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610485855.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.870 kcal (2) G-P(sol) polarization free energy of solvation -34.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds