Wall clock time and date at job start Tue Mar 31 2020 13:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00030 * 2 1 4 4 C 1.53000 * 109.47011 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.47243 * 64.99578 * 4 3 2 6 6 C 1.46494 * 120.00393 * 262.49309 * 5 4 3 7 7 C 1.50699 * 109.46862 * 270.00094 * 6 5 4 8 8 H 1.07990 * 120.00624 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99518 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00384 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99865 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46963 * 59.99821 * 11 9 7 13 13 H 1.48492 * 109.47290 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.46849 * 300.00106 * 11 9 7 15 15 C 1.34779 * 119.99214 * 82.48835 * 5 4 3 16 16 O 1.21658 * 119.99384 * 182.34736 * 15 5 4 17 17 C 1.46985 * 120.00501 * 2.35295 * 15 5 4 18 18 C 1.35888 * 125.44074 * 168.63408 * 17 15 5 19 19 C 1.41527 * 107.73697 * 179.97438 * 18 17 15 20 20 C 1.40850 * 106.99797 * 0.02562 * 19 18 17 21 21 C 1.39173 * 119.53819 * 180.02562 * 20 19 18 22 22 C 1.37708 * 120.00819 * 359.97438 * 21 20 19 23 23 C 1.38849 * 120.68703 * 0.02562 * 22 21 20 24 24 C 1.37727 * 120.44097 * 0.27510 * 23 22 21 25 25 F 1.35099 * 120.17385 * 179.70561 * 24 23 22 26 26 N 1.37517 * 107.37262 * 359.97438 * 20 19 18 27 27 H 0.97003 * 125.61549 * 179.97438 * 26 20 19 28 28 H 1.09001 * 109.47443 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47297 * 300.00382 * 1 2 3 30 30 H 1.09000 * 109.47284 * 60.00156 * 1 2 3 31 31 H 1.09000 * 109.47448 * 60.00189 * 3 2 1 32 32 H 1.09001 * 109.46764 * 299.99811 * 3 2 1 33 33 H 1.08997 * 109.47059 * 305.00422 * 4 3 2 34 34 H 1.09000 * 109.47144 * 184.99875 * 4 3 2 35 35 H 1.09000 * 109.47309 * 29.99732 * 6 5 4 36 36 H 1.08997 * 109.47307 * 149.99361 * 6 5 4 37 37 H 0.96999 * 120.00034 * 180.02562 * 10 9 7 38 38 H 1.08003 * 126.13353 * 0.02562 * 18 17 15 39 39 H 1.08000 * 119.99278 * 179.97438 * 21 20 19 40 40 H 1.07994 * 119.66044 * 180.02562 * 22 21 20 41 41 H 1.08001 * 119.78221 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5642 -1.2528 6 6 4.2636 -0.8714 -1.2974 7 6 5.7154 -1.1031 -0.9660 8 1 6.3592 -0.2648 -0.7448 9 6 6.2218 -2.3853 -0.9464 10 7 5.4379 -3.4063 -1.2162 11 14 8.0216 -2.6725 -0.5364 12 1 8.3082 -2.1526 0.8248 13 1 8.3137 -4.1277 -0.5827 14 1 8.8735 -1.9653 -1.5259 15 6 4.1156 1.3145 -2.3636 16 8 4.4398 0.7922 -3.4134 17 6 3.8767 2.7637 -2.3067 18 6 4.1908 3.6531 -3.2849 19 6 3.7992 4.9386 -2.8409 20 6 3.2397 4.7784 -1.5582 21 6 2.7633 5.8924 -0.8734 22 6 2.8413 7.1405 -1.4500 23 6 3.3919 7.3040 -2.7141 24 6 3.8647 6.2169 -3.4152 25 9 4.3940 6.3814 -4.6473 26 7 3.2964 3.4394 -1.2498 27 1 2.9817 3.0357 -0.4259 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8514 0.5681 0.8409 34 1 3.9785 2.1764 0.0889 35 1 3.6380 -1.3903 -0.5711 36 1 4.0534 -1.2533 -2.2964 37 1 5.7942 -4.3083 -1.2020 38 1 4.6552 3.4206 -4.2319 39 1 2.3325 5.7779 0.1103 40 1 2.4703 8.0012 -0.9134 41 1 3.4453 8.2896 -3.1526 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610485855.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:09 Heat of formation + Delta-G solvation = -56.339005 kcal Electronic energy + Delta-G solvation = -27017.405174 eV Core-core repulsion = 23006.011622 eV Total energy + Delta-G solvation = -4011.393552 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.85627 -42.93024 -40.56745 -38.99541 -37.69000 -36.85378 -34.90349 -33.16302 -31.65364 -30.67102 -29.92382 -28.94349 -27.25955 -25.92078 -24.43885 -23.67706 -23.37649 -22.06682 -20.89943 -19.22149 -18.80371 -18.62380 -17.64299 -17.32790 -17.04726 -16.80991 -16.71800 -16.60808 -16.39536 -16.24598 -16.05672 -15.66954 -15.15122 -15.00909 -14.73841 -14.27050 -14.20228 -13.95387 -13.63421 -13.48353 -13.20689 -13.00681 -12.85189 -12.62110 -12.50136 -12.46974 -12.41326 -12.22799 -12.08244 -11.77658 -11.13429 -10.92248 -10.70485 -10.64270 -9.71453 -9.40478 -8.77415 -8.23464 -6.39081 -0.40487 0.44022 0.95616 1.35924 1.40735 1.47858 1.70401 2.04105 2.25097 2.39098 2.67245 2.72061 3.05972 3.20903 3.34950 3.65384 3.81998 3.93562 3.96367 4.01402 4.04068 4.17920 4.26137 4.40475 4.44175 4.51106 4.63344 4.68114 4.73037 4.82398 5.01072 5.07075 5.19912 5.25625 5.34342 5.40032 5.43198 5.49414 5.74614 5.97076 6.01877 6.13969 6.27647 6.51375 6.68737 7.08070 7.32141 8.83870 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013328 B = 0.003953 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.367066 B = 7082.010173 C = 8369.143431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.028 3.972 4 C 0.080 3.920 5 N -0.584 5.584 6 C 0.272 3.728 7 C -0.550 4.550 8 H 0.054 0.946 9 C 0.011 3.989 10 N -0.926 5.926 11 Si 0.968 3.032 12 H -0.258 1.258 13 H -0.277 1.277 14 H -0.279 1.279 15 C 0.562 3.438 16 O -0.576 6.576 17 C 0.021 3.979 18 C -0.121 4.121 19 C -0.175 4.175 20 C 0.128 3.872 21 C -0.134 4.134 22 C -0.051 4.051 23 C -0.172 4.172 24 C 0.121 3.879 25 F -0.149 7.149 26 N -0.571 5.571 27 H 0.436 0.564 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.113 0.887 32 H 0.049 0.951 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.033 0.967 36 H -0.004 1.004 37 H 0.268 0.732 38 H 0.140 0.860 39 H 0.167 0.833 40 H 0.183 0.817 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.069 23.133 7.615 26.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.049 4.049 4 C -0.043 4.043 5 N -0.313 5.313 6 C 0.151 3.849 7 C -0.589 4.589 8 H 0.072 0.928 9 C -0.189 4.189 10 N -0.565 5.565 11 Si 0.792 3.208 12 H -0.183 1.183 13 H -0.202 1.202 14 H -0.204 1.204 15 C 0.350 3.650 16 O -0.456 6.456 17 C -0.088 4.088 18 C -0.149 4.149 19 C -0.180 4.180 20 C 0.017 3.983 21 C -0.154 4.154 22 C -0.070 4.070 23 C -0.192 4.192 24 C 0.101 3.899 25 F -0.127 7.127 26 N -0.188 5.188 27 H 0.287 0.713 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.130 0.870 32 H 0.067 0.933 33 H 0.121 0.879 34 H 0.131 0.869 35 H 0.051 0.949 36 H 0.014 0.986 37 H 0.077 0.923 38 H 0.158 0.842 39 H 0.185 0.815 40 H 0.200 0.800 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -10.836 22.286 7.187 25.802 hybrid contribution 0.876 -1.097 -0.471 1.481 sum -9.960 21.189 6.715 24.357 Atomic orbital electron populations 1.22941 0.79437 1.03610 1.01099 1.88049 1.21589 1.27569 1.95529 1.23435 0.92797 0.86324 1.02371 1.22334 0.93722 1.00344 0.87919 1.48032 1.63742 1.10431 1.09054 1.18764 0.95116 0.75052 0.95924 1.21681 0.95918 0.92896 1.48357 0.92761 1.25847 1.02851 0.95471 0.94686 1.70057 1.37763 0.99437 1.49211 0.85464 0.78845 0.77283 0.79188 1.18285 1.20211 1.20446 1.17689 0.78117 0.85125 0.84031 1.90784 1.50206 1.73241 1.31331 1.19892 1.06611 0.91053 0.91279 1.20832 1.03808 0.90905 0.99305 1.18255 1.09477 0.92715 0.97580 1.18569 1.00397 0.85195 0.94137 1.20600 1.03852 0.89023 1.01929 1.21211 0.95284 0.97460 0.93087 1.21270 1.03113 0.97886 0.96924 1.17565 0.98774 0.92753 0.80766 1.91451 1.84231 1.96196 1.40870 1.43396 1.52646 1.05396 1.17329 0.71269 0.89557 0.91161 0.93986 0.86962 0.93284 0.87860 0.86858 0.94910 0.98627 0.92319 0.84179 0.81521 0.80000 0.82121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 11.01 113.37 1.25 1.80 16 2 O -0.41 -12.83 10.45 -148.98 -1.56 -14.39 16 3 C 0.03 0.68 4.74 71.98 0.34 1.03 16 4 C 0.08 2.45 5.32 86.38 0.46 2.91 16 5 N -0.58 -25.89 2.42 -830.53 -2.01 -27.90 16 6 C 0.27 15.19 5.14 85.63 0.44 15.63 16 7 C -0.55 -32.36 9.39 25.60 0.24 -32.12 16 8 H 0.05 3.14 7.81 -2.92 -0.02 3.12 16 9 C 0.01 0.64 5.46 84.66 0.46 1.10 16 10 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 11 Si 0.97 45.50 29.54 68.60 2.03 47.53 16 12 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 14 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 15 C 0.56 25.86 7.56 86.54 0.65 26.52 16 16 O -0.58 -32.28 16.43 -4.21 -0.07 -32.35 16 17 C 0.02 0.76 6.38 39.88 0.25 1.01 16 18 C -0.12 -4.25 10.55 22.54 0.24 -4.02 16 19 C -0.18 -4.96 6.14 -21.33 -0.13 -5.09 16 20 C 0.13 2.87 7.25 39.12 0.28 3.15 16 21 C -0.13 -1.75 10.06 22.37 0.23 -1.53 16 22 C -0.05 -0.53 10.01 22.29 0.22 -0.31 16 23 C -0.17 -2.68 10.00 22.30 0.22 -2.46 16 24 C 0.12 2.97 7.35 22.65 0.17 3.14 16 25 F -0.15 -4.10 17.28 44.97 0.78 -3.33 16 26 N -0.57 -14.32 4.29 -177.20 -0.76 -15.08 16 27 H 0.44 8.58 3.43 -92.71 -0.32 8.26 16 28 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.21 6.62 -2.39 -0.02 1.19 16 33 H 0.10 3.29 8.02 -2.39 -0.02 3.27 16 34 H 0.11 2.77 5.13 -2.39 -0.01 2.76 16 35 H 0.03 1.88 7.87 -2.39 -0.02 1.87 16 36 H 0.00 -0.29 7.39 -2.39 -0.02 -0.30 16 37 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 38 H 0.14 5.19 8.06 -2.91 -0.02 5.16 16 39 H 0.17 0.94 8.06 -2.91 -0.02 0.91 16 40 H 0.18 0.33 8.06 -2.91 -0.02 0.31 16 41 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -82.99 350.74 4.77 -78.22 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.75 Total: 13.19 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 5.33 Total: 10.75 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -2.49 Total: -99.63 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -1.63 Total: -46.74 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.78 Total: -3.33 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -82.99 4.77 -78.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610485855.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.881 kcal (2) G-P(sol) polarization free energy of solvation -82.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds