Wall clock time and date at job start Tue Mar 31 2020 13:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00017 * 2 1 4 4 H 1.48496 * 109.47075 * 270.00056 * 3 2 1 5 5 H 1.48494 * 109.46948 * 30.00218 * 3 2 1 6 6 H 1.48495 * 109.47025 * 149.99894 * 3 2 1 7 7 C 1.37875 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00067 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00365 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47495 * 185.07363 * 9 7 2 11 11 C 1.46959 * 110.99636 * 295.16439 * 10 9 7 12 12 C 1.53054 * 109.36582 * 183.18804 * 11 10 9 13 13 N 1.46959 * 109.36247 * 301.60105 * 12 11 10 14 14 C 1.46902 * 110.99798 * 183.18563 * 13 12 11 15 15 H 1.09004 * 110.34491 * 181.68781 * 14 13 12 16 16 C 1.54346 * 110.30296 * 303.80938 * 14 13 12 17 17 C 1.54343 * 102.39699 * 145.27770 * 16 14 13 18 18 C 1.51371 * 105.16695 * 333.64534 * 17 16 14 19 19 C 1.38243 * 109.76038 * 17.19779 * 18 17 16 20 20 C 1.38456 * 119.85666 * 180.02562 * 19 18 17 21 21 C 1.38150 * 120.24436 * 0.25380 * 20 19 18 22 22 C 1.38190 * 119.95067 * 359.46627 * 21 20 19 23 23 C 1.38266 * 119.91793 * 0.54269 * 22 21 20 24 24 Cl 1.73595 * 119.90851 * 179.69795 * 23 22 21 25 25 C 1.46963 * 110.88020 * 59.32177 * 13 12 11 26 26 C 1.46956 * 111.00360 * 58.96252 * 10 9 7 27 27 H 0.96999 * 120.00099 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46996 * 65.06456 * 9 7 2 29 29 H 1.08998 * 109.46634 * 305.07199 * 9 7 2 30 30 H 1.09000 * 109.49056 * 63.22746 * 11 10 9 31 31 H 1.08994 * 109.50959 * 303.16891 * 11 10 9 32 32 H 1.08994 * 109.49267 * 181.63312 * 12 11 10 33 33 H 1.08998 * 109.50720 * 61.57439 * 12 11 10 34 34 H 1.08995 * 110.82284 * 27.05167 * 16 14 13 35 35 H 1.09004 * 110.81955 * 263.50240 * 16 14 13 36 36 H 1.08998 * 110.30406 * 214.72510 * 17 16 14 37 37 H 1.08996 * 110.38791 * 92.60789 * 17 16 14 38 38 H 1.08007 * 119.87443 * 179.97438 * 20 19 18 39 39 H 1.08005 * 120.02289 * 179.74629 * 21 20 19 40 40 H 1.08002 * 120.03936 * 180.24525 * 22 21 20 41 41 H 1.08992 * 109.48993 * 60.64649 * 25 13 12 42 42 H 1.08998 * 109.48703 * 180.71207 * 25 13 12 43 43 H 1.09002 * 109.49132 * 296.78470 * 26 10 9 44 44 H 1.08999 * 109.48384 * 56.82688 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 7 2.2009 -3.6131 0.1204 11 6 3.0797 -3.6870 -1.0551 12 6 3.9983 -4.9044 -0.9264 13 7 4.7852 -4.7925 0.3097 14 6 5.7351 -5.9064 0.4318 15 1 6.2917 -5.8292 1.3658 16 6 4.9894 -7.2561 0.3628 17 6 6.0025 -8.1570 -0.3748 18 6 6.8388 -7.2113 -1.2101 19 6 6.6852 -5.9180 -0.7466 20 6 7.3610 -4.8795 -1.3645 21 6 8.1838 -5.1304 -2.4455 22 6 8.3426 -6.4236 -2.9061 23 6 7.6687 -7.4624 -2.2910 24 17 7.8623 -9.0857 -2.8748 25 6 3.9063 -4.7187 1.4853 26 6 2.9878 -3.5012 1.3564 27 1 -0.4850 0.8400 0.0004 28 1 0.6945 -2.5966 -0.9339 29 1 0.5577 -2.5191 0.8391 30 1 3.6830 -2.7812 -1.1157 31 1 2.4745 -3.7818 -1.9567 32 1 4.6708 -4.9448 -1.7831 33 1 3.3965 -5.8126 -0.8933 34 1 4.0672 -7.1604 -0.2102 35 1 4.7874 -7.6386 1.3633 36 1 5.4804 -8.8671 -1.0161 37 1 6.6315 -8.6862 0.3410 38 1 7.2409 -3.8689 -1.0028 39 1 8.7060 -4.3171 -2.9274 40 1 8.9886 -6.6218 -3.7486 41 1 3.3032 -5.6245 1.5459 42 1 4.5118 -4.6236 2.3866 43 1 3.5900 -2.5932 1.3233 44 1 2.3152 -3.4605 2.2132 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611174365.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:47 Heat of formation + Delta-G solvation = 32.078418 kcal Electronic energy + Delta-G solvation = -25034.234935 eV Core-core repulsion = 21590.844920 eV Total energy + Delta-G solvation = -3443.390015 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.75466 -38.50672 -36.75611 -36.02345 -34.02000 -32.30302 -30.96354 -30.28322 -29.13856 -28.14801 -26.07485 -24.31375 -23.00764 -22.93023 -21.82857 -21.22509 -20.45590 -18.75016 -16.85736 -16.33208 -16.27217 -15.63349 -15.36136 -14.96798 -14.50998 -14.32159 -14.25090 -14.12667 -13.78278 -13.40105 -13.16491 -12.97382 -12.78999 -12.20975 -12.04679 -11.86022 -11.80265 -11.61068 -11.48395 -11.28579 -11.11144 -11.06891 -10.92993 -10.83098 -10.59960 -10.40219 -10.31464 -10.06169 -9.81455 -9.51985 -8.79498 -8.75730 -8.42689 -8.06242 -7.16118 -6.01949 -4.10858 1.04295 1.08780 1.98413 3.27875 3.34812 3.38081 3.44772 4.02675 4.25818 4.35675 4.41442 4.76940 4.88723 4.97912 4.99036 5.09008 5.22245 5.28541 5.31775 5.38857 5.44506 5.58075 5.62131 5.66909 5.74526 5.79301 5.83028 5.90382 5.96357 6.06690 6.10781 6.20717 6.25386 6.33039 6.41219 6.62870 6.65875 6.78177 6.87614 7.21388 7.28422 7.39255 7.53182 7.90851 8.06095 8.29412 8.30750 8.99910 9.56026 11.03123 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.021249 B = 0.003105 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.386081 B = 9016.681535 C = 9654.081239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.187 3.813 10 N -0.543 5.543 11 C 0.065 3.935 12 C 0.057 3.943 13 N -0.525 5.525 14 C 0.123 3.877 15 H 0.097 0.903 16 C -0.157 4.157 17 C -0.075 4.075 18 C -0.089 4.089 19 C -0.067 4.067 20 C -0.081 4.081 21 C -0.112 4.112 22 C -0.113 4.113 23 C -0.026 4.026 24 Cl -0.080 7.080 25 C 0.058 3.942 26 C 0.066 3.934 27 H 0.262 0.738 28 H 0.026 0.974 29 H 0.034 0.966 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.037 0.963 42 H 0.069 0.931 43 H 0.049 0.951 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.905 -16.211 -1.922 22.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.586 4.586 8 H 0.077 0.923 9 C 0.062 3.938 10 N -0.268 5.268 11 C -0.064 4.064 12 C -0.071 4.071 13 N -0.248 5.248 14 C 0.014 3.986 15 H 0.115 0.885 16 C -0.196 4.196 17 C -0.113 4.113 18 C -0.090 4.090 19 C -0.068 4.068 20 C -0.099 4.099 21 C -0.131 4.131 22 C -0.131 4.131 23 C -0.052 4.052 24 Cl -0.051 7.051 25 C -0.070 4.070 26 C -0.063 4.063 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.056 0.944 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.729 -16.218 -1.956 22.677 hybrid contribution 0.509 0.941 -0.182 1.085 sum 16.237 -15.277 -2.138 22.397 Atomic orbital electron populations 1.69943 1.06034 1.26794 1.50321 1.24963 0.94742 0.99142 0.94963 0.86648 0.79939 0.83637 0.78131 1.20672 1.21207 1.19907 1.21767 0.93426 0.92017 1.51427 0.92306 1.19723 0.90869 0.85557 0.97687 1.62690 1.16967 1.46264 1.00852 1.21919 0.94110 0.95966 0.94429 1.22280 0.94911 0.98375 0.91484 1.62302 1.18459 1.40690 1.03360 1.21248 0.92181 0.89213 0.95973 0.88489 1.23049 0.99350 0.95822 1.01393 1.20975 0.96111 0.96759 0.97430 1.20384 0.97464 0.96260 0.94930 1.20404 0.97329 0.92280 0.96768 1.20853 0.94685 0.99612 0.94740 1.21054 0.99050 0.96036 0.96925 1.20940 1.00007 0.91754 1.00430 1.20444 1.01473 0.85847 0.97468 1.98352 1.96645 1.21952 1.88177 1.22239 0.93961 0.98844 0.91908 1.21908 0.94849 0.95693 0.93892 0.92850 0.95578 0.94801 0.93562 0.91569 0.91372 0.94266 0.89645 0.90300 0.90479 0.89953 0.84852 0.84951 0.85055 0.94436 0.91300 0.93235 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.55 -14.91 7.66 -34.44 -0.26 -15.17 16 8 H 0.06 1.60 5.82 -52.48 -0.31 1.30 16 9 C 0.19 4.79 5.14 -4.98 -0.03 4.76 16 10 N -0.54 -11.50 4.92 -235.91 -1.16 -12.66 16 11 C 0.06 1.25 5.32 -3.76 -0.02 1.23 16 12 C 0.06 0.89 4.98 -3.76 -0.02 0.88 16 13 N -0.52 -7.59 4.70 -226.63 -1.06 -8.65 16 14 C 0.12 1.45 2.97 -67.83 -0.20 1.25 16 15 H 0.10 1.08 8.13 -51.93 -0.42 0.65 16 16 C -0.16 -1.65 5.54 -25.32 -0.14 -1.79 16 17 C -0.08 -0.74 6.47 -26.85 -0.17 -0.91 16 18 C -0.09 -1.00 6.05 -104.17 -0.63 -1.63 16 19 C -0.07 -0.79 4.38 -104.21 -0.46 -1.25 16 20 C -0.08 -0.93 9.65 -39.53 -0.38 -1.31 16 21 C -0.11 -1.12 10.04 -39.63 -0.40 -1.52 16 22 C -0.11 -1.12 9.83 -39.59 -0.39 -1.51 16 23 C -0.03 -0.28 6.32 -39.45 -0.25 -0.53 16 24 Cl -0.08 -0.81 28.71 -51.86 -1.49 -2.30 16 25 C 0.06 0.87 5.38 -3.76 -0.02 0.85 16 26 C 0.07 1.25 5.24 -3.77 -0.02 1.23 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.03 0.71 8.12 -51.93 -0.42 0.29 16 29 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.99 6.78 -51.93 -0.35 0.64 16 31 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 32 H 0.07 1.03 6.74 -51.93 -0.35 0.68 16 33 H 0.04 0.61 5.97 -51.93 -0.31 0.30 16 34 H 0.09 1.02 5.57 -51.93 -0.29 0.73 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.13 1.57 8.06 -52.48 -0.42 1.14 16 39 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.04 0.55 7.49 -51.93 -0.39 0.16 16 42 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 43 H 0.05 1.06 6.62 -51.93 -0.34 0.72 16 44 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 353.57 15.07 5.33 5.33 Total: -1.00 -28.77 353.57 -12.70 -41.47 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.54 Total: -0.38 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -3.49 Total: -13.74 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -1.49 Total: -46.75 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.49 Total: -2.30 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.77 -12.70 -41.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174365.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.550 kcal (2) G-P(sol) polarization free energy of solvation -28.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds