Wall clock time and date at job start Tue Mar 31 2020 13:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00140 * 2 1 4 4 H 1.48494 * 109.47429 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46948 * 299.99752 * 3 2 1 6 6 H 1.48504 * 109.46960 * 59.99439 * 3 2 1 7 7 C 1.37881 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99893 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99295 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46726 * 179.97438 * 9 7 2 11 11 C 1.46958 * 110.99791 * 66.17560 * 10 9 7 12 12 C 1.53048 * 109.36344 * 183.16799 * 11 10 9 13 13 N 1.46958 * 109.38540 * 301.63096 * 12 11 10 14 14 C 1.46899 * 111.00579 * 183.17412 * 13 12 11 15 15 H 1.09009 * 110.26430 * 59.07324 * 14 13 12 16 16 C 1.54348 * 110.30476 * 297.00234 * 14 13 12 17 17 C 1.54341 * 102.39382 * 214.72127 * 16 14 13 18 18 C 1.51368 * 105.17042 * 26.35189 * 17 16 14 19 19 C 1.38408 * 109.78167 * 342.72191 * 18 17 16 20 20 C 1.38326 * 119.83257 * 179.97438 * 19 18 17 21 21 C 1.38159 * 120.29259 * 0.16598 * 20 19 18 22 22 C 1.38188 * 119.94502 * 359.92442 * 21 20 19 23 23 C 1.38266 * 119.92522 * 0.02562 * 22 21 20 24 24 Cl 1.73603 * 119.90749 * 180.02562 * 23 22 21 25 25 C 1.46964 * 110.87612 * 59.30964 * 13 12 11 26 26 C 1.46952 * 110.99977 * 190.00027 * 10 9 7 27 27 H 0.97002 * 119.99861 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47731 * 60.00090 * 9 7 2 29 29 H 1.09001 * 109.47115 * 299.99068 * 9 7 2 30 30 H 1.09001 * 109.47061 * 63.21287 * 11 10 9 31 31 H 1.09004 * 109.51103 * 303.14297 * 11 10 9 32 32 H 1.09004 * 109.49140 * 181.65624 * 12 11 10 33 33 H 1.08997 * 109.49296 * 61.60991 * 12 11 10 34 34 H 1.08994 * 110.81970 * 332.95132 * 16 14 13 35 35 H 1.09004 * 110.81927 * 96.49715 * 16 14 13 36 36 H 1.08999 * 110.29767 * 145.26746 * 17 16 14 37 37 H 1.08990 * 110.30456 * 267.32591 * 17 16 14 38 38 H 1.08001 * 119.83411 * 180.08972 * 20 19 18 39 39 H 1.07999 * 120.02689 * 179.97438 * 21 20 19 40 40 H 1.08008 * 120.03802 * 180.02562 * 22 21 20 41 41 H 1.09000 * 109.48969 * 60.64801 * 25 13 12 42 42 H 1.08998 * 109.48429 * 180.69491 * 25 13 12 43 43 H 1.08994 * 109.49282 * 56.84510 * 26 10 9 44 44 H 1.09000 * 109.50568 * 296.78427 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 2.9690 -3.6558 1.2556 12 6 4.0042 -4.7809 1.1842 13 7 3.3195 -6.0592 0.9460 14 6 4.2741 -7.1758 0.9459 15 1 4.7971 -7.2254 1.9010 16 6 5.2842 -7.0168 -0.2102 17 6 5.5382 -8.4796 -0.6317 18 6 4.2835 -9.2290 -0.2376 19 6 3.5567 -8.4801 0.6716 20 6 2.3647 -8.9723 1.1718 21 6 1.8984 -10.2094 0.7703 22 6 2.6238 -10.9591 -0.1359 23 6 3.8152 -10.4699 -0.6388 24 17 4.7258 -11.4118 -1.7778 25 6 2.5564 -6.0187 -0.3093 26 6 1.5209 -4.8939 -0.2377 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8904 30 1 2.2899 -3.8388 2.0883 31 1 3.4774 -2.7029 1.4032 32 1 4.5518 -4.8315 2.1253 33 1 4.7000 -4.5836 0.3687 34 1 4.8476 -6.4473 -1.0306 35 1 6.2043 -6.5494 0.1407 36 1 5.6929 -8.5413 -1.7089 37 1 6.4023 -8.8811 -0.1026 38 1 1.7969 -8.3874 1.8801 39 1 0.9674 -10.5897 1.1639 40 1 2.2604 -11.9262 -0.4511 41 1 3.2355 -5.8352 -1.1420 42 1 2.0488 -6.9719 -0.4572 43 1 0.9733 -4.8433 -1.1788 44 1 0.8252 -5.0916 0.5778 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611174366.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:49 Heat of formation + Delta-G solvation = 14.594515 kcal Electronic energy + Delta-G solvation = -24815.083885 eV Core-core repulsion = 21370.935711 eV Total energy + Delta-G solvation = -3444.148174 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.70419 -39.75927 -37.72342 -37.04173 -35.39020 -34.25439 -32.05513 -31.67177 -30.09620 -29.64723 -27.72741 -25.74582 -24.45436 -23.81487 -23.35852 -22.09784 -21.66809 -20.09318 -18.49649 -17.77233 -17.36586 -16.70591 -16.45195 -16.23318 -15.90964 -15.75980 -15.58342 -15.43395 -15.04018 -14.62758 -14.42273 -14.22197 -13.95873 -13.79332 -13.49054 -13.00415 -12.98892 -12.83113 -12.66564 -12.51549 -12.47894 -12.40333 -12.29481 -12.09226 -12.05340 -11.90199 -11.79271 -11.57867 -11.44904 -11.14601 -10.62640 -9.62325 -9.56612 -9.27451 -9.01092 -8.20753 -6.31129 0.21238 0.27690 1.18862 1.41339 1.41901 1.55588 2.40287 2.60923 2.92251 3.11675 3.30370 3.39334 3.51143 3.91520 4.01527 4.11053 4.12331 4.19747 4.23521 4.33053 4.39233 4.44457 4.49019 4.53943 4.67554 4.68405 4.81371 4.83515 4.89602 4.95686 4.98786 5.04109 5.04702 5.08335 5.20972 5.25653 5.27973 5.30342 5.43121 5.55260 5.64321 5.85211 6.01724 6.06515 6.12848 6.35691 6.62285 6.85323 7.38842 8.90844 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.027220 B = 0.002707 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.418004 B =10340.448236 C =10667.227593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.521 4.521 8 H 0.065 0.935 9 C 0.209 3.791 10 N -0.543 5.543 11 C 0.069 3.931 12 C 0.070 3.930 13 N -0.532 5.532 14 C 0.125 3.875 15 H 0.111 0.889 16 C -0.151 4.151 17 C -0.072 4.072 18 C -0.096 4.096 19 C -0.083 4.083 20 C -0.093 4.093 21 C -0.110 4.110 22 C -0.113 4.113 23 C -0.037 4.037 24 Cl -0.076 7.076 25 C 0.075 3.925 26 C 0.057 3.943 27 H 0.264 0.736 28 H 0.001 0.999 29 H -0.041 1.041 30 H 0.015 0.985 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.130 0.870 39 H 0.156 0.844 40 H 0.150 0.850 41 H 0.040 0.960 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.461 -23.555 1.501 25.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.559 4.559 8 H 0.083 0.917 9 C 0.083 3.917 10 N -0.268 5.268 11 C -0.060 4.060 12 C -0.058 4.058 13 N -0.255 5.255 14 C 0.018 3.982 15 H 0.129 0.871 16 C -0.190 4.190 17 C -0.109 4.109 18 C -0.098 4.098 19 C -0.084 4.084 20 C -0.112 4.112 21 C -0.128 4.128 22 C -0.131 4.131 23 C -0.064 4.064 24 Cl -0.047 7.047 25 C -0.053 4.053 26 C -0.072 4.072 27 H 0.073 0.927 28 H 0.019 0.981 29 H -0.023 1.023 30 H 0.033 0.967 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.148 0.852 39 H 0.174 0.826 40 H 0.168 0.832 41 H 0.058 0.942 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 10.396 -23.513 1.407 25.747 hybrid contribution -0.291 1.007 -0.212 1.070 sum 10.106 -22.505 1.195 24.699 Atomic orbital electron populations 1.70101 1.07829 1.27851 1.51878 1.25946 0.95739 1.03305 0.94794 0.85310 0.79046 0.78440 0.77674 1.18492 1.20500 1.20414 1.21474 0.93630 0.90906 1.49886 0.91726 1.19342 0.90103 0.89103 0.93167 1.62214 1.27160 1.02791 1.34635 1.21992 0.95733 0.98605 0.89649 1.22100 0.94733 0.87235 1.01730 1.62301 1.25713 1.03257 1.34231 1.21321 0.90497 0.86770 0.99656 0.87106 1.22970 1.00495 0.96679 0.98807 1.20978 0.94483 0.93247 1.02181 1.20583 0.98391 0.93221 0.97582 1.20449 0.95266 0.95828 0.96847 1.20916 0.94921 0.95778 0.99550 1.21314 1.00675 0.93735 0.97078 1.21230 0.92958 1.01385 0.97550 1.20640 0.95484 0.92968 0.97297 1.98356 1.74348 1.72223 1.59798 1.21991 0.95176 0.97295 0.90810 1.22118 0.95694 0.89682 0.99681 0.92696 0.98109 1.02312 0.96660 0.91198 0.88422 0.93762 0.91507 0.88669 0.90389 0.88445 0.85239 0.82648 0.83182 0.94239 0.89951 0.91706 0.96124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.95 13.29 21.45 0.28 -56.67 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.52 -29.73 8.47 25.60 0.22 -29.51 16 8 H 0.06 3.60 7.13 -2.91 -0.02 3.57 16 9 C 0.21 11.43 4.72 85.56 0.40 11.84 16 10 N -0.54 -23.98 4.70 -900.28 -4.23 -28.21 16 11 C 0.07 2.66 5.43 86.31 0.47 3.13 16 12 C 0.07 1.99 5.32 86.31 0.46 2.45 16 13 N -0.53 -14.07 4.73 -870.90 -4.12 -18.19 16 14 C 0.13 2.59 3.04 44.84 0.14 2.73 16 15 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 16 C -0.15 -2.82 5.34 31.51 0.17 -2.65 16 17 C -0.07 -1.23 6.47 30.52 0.20 -1.03 16 18 C -0.10 -1.91 6.05 -19.53 -0.12 -2.03 16 19 C -0.08 -1.72 4.34 -19.59 -0.09 -1.81 16 20 C -0.09 -1.83 9.29 22.27 0.21 -1.62 16 21 C -0.11 -1.78 10.04 22.24 0.22 -1.55 16 22 C -0.11 -1.86 9.82 22.26 0.22 -1.64 16 23 C -0.04 -0.71 6.32 22.35 0.14 -0.57 16 24 Cl -0.08 -1.36 28.71 -2.72 -0.08 -1.44 16 25 C 0.08 2.22 5.00 86.31 0.43 2.65 16 26 C 0.06 2.14 5.61 86.31 0.48 2.62 16 27 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 28 H 0.00 0.05 8.03 -2.39 -0.02 0.03 16 29 H -0.04 -2.44 8.12 -2.39 -0.02 -2.46 16 30 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 2.91 6.79 -2.38 -0.02 2.89 16 32 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.04 1.27 7.30 -2.39 -0.02 1.25 16 34 H 0.07 1.51 5.78 -2.39 -0.01 1.50 16 35 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 39 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 40 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 41 H 0.04 1.21 6.13 -2.39 -0.01 1.19 16 42 H 0.08 2.26 6.34 -2.39 -0.02 2.24 16 43 H 0.06 2.45 8.07 -2.39 -0.02 2.43 16 44 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -64.79 356.20 -1.11 -65.91 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 0.99 Total: 8.80 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: 4.02 Total: -16.54 kcal Atomic # 7 Polarization: -95.00 SS G_CDS: -8.07 Total: -103.07 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -64.79 -1.11 -65.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174366.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.501 kcal (2) G-P(sol) polarization free energy of solvation -64.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds