Wall clock time and date at job start Tue Mar 31 2020 13:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99832 * 2 1 4 4 H 1.48495 * 109.47082 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47144 * 299.99397 * 3 2 1 6 6 H 1.48495 * 109.47237 * 59.99749 * 3 2 1 7 7 C 1.38806 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00019 * 163.07465 * 7 2 1 9 9 N 1.36938 * 120.00045 * 343.06986 * 7 2 1 10 10 C 1.46930 * 120.63033 * 331.82225 * 9 7 2 11 11 C 1.53191 * 108.77970 * 233.63230 * 10 9 7 12 12 C 1.53042 * 109.31152 * 305.36879 * 11 10 9 13 13 N 1.46893 * 109.45879 * 181.38594 * 12 11 10 14 14 C 1.46906 * 111.00145 * 154.97319 * 13 12 11 15 15 H 1.08997 * 110.26917 * 35.61671 * 14 13 12 16 16 C 1.54340 * 110.30378 * 157.79895 * 14 13 12 17 17 C 1.54353 * 102.39373 * 92.56779 * 16 14 13 18 18 C 1.51383 * 105.16782 * 26.35299 * 17 16 14 19 19 C 1.38505 * 130.37190 * 162.81480 * 18 17 16 20 20 C 1.38082 * 120.22764 * 180.27274 * 19 18 17 21 21 C 1.38372 * 119.92474 * 359.47722 * 20 19 18 22 22 Cl 1.73602 * 120.04874 * 180.22883 * 21 20 19 23 23 C 1.38216 * 119.90327 * 0.49252 * 21 20 19 24 24 C 1.38229 * 109.75413 * 342.80855 * 18 17 16 25 25 C 1.53042 * 109.52714 * 61.36841 * 12 11 10 26 26 C 1.46925 * 120.63155 * 151.85147 * 9 7 2 27 27 H 0.97003 * 120.00418 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.58068 * 113.84342 * 10 9 7 29 29 H 1.09001 * 109.58628 * 353.42507 * 10 9 7 30 30 H 1.08992 * 109.49635 * 185.41519 * 11 10 9 31 31 H 1.08998 * 109.52434 * 65.33094 * 11 10 9 32 32 H 1.09000 * 109.45796 * 301.35775 * 12 11 10 33 33 H 1.00901 * 111.00028 * 31.01706 * 13 12 11 34 34 H 1.08998 * 110.82557 * 210.79063 * 16 14 13 35 35 H 1.08996 * 110.82541 * 334.14521 * 16 14 13 36 36 H 1.08997 * 110.29928 * 267.43068 * 17 16 14 37 37 H 1.08996 * 110.30245 * 145.27375 * 17 16 14 38 38 H 1.07996 * 119.88686 * 0.02562 * 19 18 17 39 39 H 1.08008 * 120.03911 * 179.72073 * 20 19 18 40 40 H 1.08004 * 119.90160 * 179.74904 * 23 21 20 41 41 H 1.09000 * 109.49691 * 58.58378 * 25 12 11 42 42 H 1.09000 * 109.49214 * 178.67471 * 25 12 11 43 43 H 1.08997 * 109.58530 * 246.15312 * 26 9 7 44 44 H 1.08997 * 109.58511 * 6.43943 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0551 -1.2225 -0.2717 9 7 1.3701 -2.3622 0.3464 10 6 0.2264 -2.3398 1.2686 11 6 0.4985 -3.3182 2.4155 12 6 0.8135 -4.7000 1.8381 13 7 1.0424 -5.6486 2.9360 14 6 0.7620 -7.0260 2.5089 15 1 1.0570 -7.1663 1.4691 16 6 1.5023 -8.0298 3.4180 17 6 0.4450 -8.3399 4.4989 18 6 -0.8902 -8.0964 3.8284 19 6 -2.1636 -8.5035 4.1907 20 6 -3.2507 -8.1626 3.4106 21 6 -3.0695 -7.4025 2.2686 22 17 -4.4347 -6.9670 1.2886 23 6 -1.7994 -6.9952 1.9062 24 6 -0.7080 -7.3414 2.6850 25 6 2.0686 -4.6163 0.9665 26 6 1.8141 -3.6529 -0.1971 27 1 -0.4851 0.8400 -0.0004 28 1 -0.6768 -2.6410 0.7378 29 1 0.0993 -1.3339 1.6687 30 1 -0.3817 -3.3830 3.0549 31 1 1.3481 -2.9662 3.0007 32 1 -0.0267 -5.0408 1.2330 33 1 0.4941 -5.4027 3.7466 34 1 1.7669 -8.9311 2.8651 35 1 2.3886 -7.5732 3.8584 36 1 0.5679 -7.6713 5.3509 37 1 0.5240 -9.3791 4.8181 38 1 -2.3062 -9.0929 5.0843 39 1 -4.2418 -8.4854 3.6935 40 1 -1.6576 -6.4054 1.0126 41 1 2.9035 -4.2518 1.5650 42 1 2.3059 -5.6053 0.5745 43 1 1.0404 -4.0613 -0.8472 44 1 2.7332 -3.5130 -0.7661 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611198435.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:22 Heat of formation + Delta-G solvation = 18.703882 kcal Electronic energy + Delta-G solvation = -24898.854741 eV Core-core repulsion = 21454.884763 eV Total energy + Delta-G solvation = -3443.969978 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.45479 -39.44383 -37.97996 -36.87357 -35.41571 -33.61026 -32.25009 -31.58965 -30.62189 -29.67757 -27.42623 -26.10342 -23.92152 -23.79740 -23.13312 -21.95581 -21.36234 -20.63865 -18.72881 -17.81791 -17.13491 -16.78091 -16.47702 -16.23552 -15.85591 -15.66884 -15.33514 -14.96800 -14.83524 -14.59519 -14.43554 -14.15710 -14.09825 -13.76352 -13.25111 -13.06639 -12.99296 -12.70548 -12.62618 -12.45992 -12.39060 -12.24534 -12.15479 -12.04191 -11.88086 -11.85157 -11.69182 -11.66091 -11.24801 -11.13037 -10.55889 -10.03947 -9.57535 -9.26979 -8.70214 -7.88590 -5.34291 0.11288 0.23026 1.10707 1.45493 1.47272 1.58299 2.50737 2.54259 3.16516 3.30070 3.37748 3.63425 3.67679 3.88638 3.99412 4.03567 4.15593 4.22027 4.27356 4.36218 4.45787 4.53014 4.58302 4.68789 4.70560 4.79953 4.85307 4.95228 4.96292 5.01912 5.05224 5.09061 5.15065 5.23016 5.23236 5.31647 5.37476 5.40129 5.51633 5.55141 5.63922 5.71197 5.80838 6.11959 6.38057 6.44677 7.13571 7.84663 8.37004 9.18221 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.015447 B = 0.003466 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.198142 B = 8077.222972 C = 9316.706101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.051 4.051 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.292 1.292 6 H -0.289 1.289 7 C -0.262 4.262 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.182 3.818 11 C -0.125 4.125 12 C 0.107 3.893 13 N -0.660 5.660 14 C 0.123 3.877 15 H 0.078 0.922 16 C -0.103 4.103 17 C -0.077 4.077 18 C -0.083 4.083 19 C -0.097 4.097 20 C -0.108 4.108 21 C -0.052 4.052 22 Cl -0.080 7.080 23 C -0.107 4.107 24 C -0.131 4.131 25 C -0.102 4.102 26 C 0.140 3.860 27 H 0.249 0.751 28 H -0.010 1.010 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.027 0.973 33 H 0.342 0.658 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.161 0.839 39 H 0.153 0.847 40 H 0.110 0.890 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.007 0.993 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.611 -21.847 11.148 24.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.246 4.246 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.216 1.216 7 C -0.393 4.393 8 H 0.085 0.915 9 N -0.333 5.333 10 C 0.056 3.944 11 C -0.164 4.164 12 C -0.002 4.002 13 N -0.289 5.289 14 C 0.013 3.987 15 H 0.096 0.904 16 C -0.141 4.141 17 C -0.114 4.114 18 C -0.084 4.084 19 C -0.115 4.115 20 C -0.126 4.126 21 C -0.079 4.079 22 Cl -0.051 7.051 23 C -0.126 4.126 24 C -0.133 4.133 25 C -0.142 4.142 26 C 0.014 3.986 27 H 0.058 0.942 28 H 0.008 0.992 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.161 0.839 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.178 0.822 39 H 0.170 0.830 40 H 0.128 0.872 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.025 0.975 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.105 -21.716 10.924 24.400 hybrid contribution -1.382 1.542 -0.838 2.233 sum -3.486 -20.174 10.086 22.823 Atomic orbital electron populations 1.70200 1.06769 1.25766 1.55582 1.25811 0.96017 1.01557 1.01211 0.85208 0.78709 0.79771 0.76786 1.18943 1.21912 1.21611 1.19571 0.92873 0.86042 1.40776 0.91518 1.44314 1.35876 1.02415 1.50668 1.20495 0.87617 0.97470 0.88827 1.22130 1.00435 0.95573 0.98285 1.21219 0.96037 0.91009 0.91969 1.60869 1.60324 1.00590 1.07123 1.21244 0.87601 0.89487 1.00368 0.90370 1.22325 0.98100 0.97704 0.95959 1.21148 0.88404 1.03726 0.98129 1.21088 0.96243 0.95930 0.95110 1.20925 0.90114 1.00048 1.00371 1.21234 1.01129 0.97456 0.92812 1.20930 0.88124 1.02997 0.95841 1.98371 1.43932 1.92198 1.70573 1.20603 0.91081 1.00566 1.00386 1.21450 0.96610 0.98933 0.96321 1.21813 0.97338 0.98576 0.96425 1.21074 0.97105 0.86100 0.94299 0.94152 0.99225 0.92789 0.92324 0.92334 0.95485 0.83947 0.89460 0.88819 0.89059 0.88211 0.82163 0.82968 0.87197 0.92323 0.90930 0.97475 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.80 11.20 21.65 0.24 -56.56 16 2 C -0.05 -2.90 4.92 84.86 0.42 -2.48 16 3 Si 0.97 45.66 29.59 68.60 2.03 47.69 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 7 C -0.26 -14.82 9.58 84.03 0.81 -14.01 16 8 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 9 N -0.61 -31.59 2.99 -699.10 -2.09 -33.68 16 10 C 0.18 9.13 5.30 86.36 0.46 9.59 16 11 C -0.12 -4.82 5.36 30.67 0.16 -4.65 16 12 C 0.11 3.54 2.30 44.94 0.10 3.64 16 13 N -0.66 -16.96 6.09 -469.73 -2.86 -19.82 16 14 C 0.12 2.67 2.97 44.84 0.13 2.80 16 15 H 0.08 1.86 7.18 -2.39 -0.02 1.84 16 16 C -0.10 -1.57 6.78 31.51 0.21 -1.35 16 17 C -0.08 -0.99 6.77 30.52 0.21 -0.78 16 18 C -0.08 -1.46 6.14 -19.59 -0.12 -1.58 16 19 C -0.10 -1.50 10.04 22.30 0.22 -1.28 16 20 C -0.11 -1.97 9.83 22.26 0.22 -1.75 16 21 C -0.05 -1.24 6.32 22.30 0.14 -1.10 16 22 Cl -0.08 -1.95 28.96 -2.72 -0.08 -2.02 16 23 C -0.11 -2.78 9.39 22.32 0.21 -2.57 16 24 C -0.13 -2.95 5.36 -19.60 -0.11 -3.06 16 25 C -0.10 -3.52 5.57 30.67 0.17 -3.35 16 26 C 0.14 6.01 6.52 86.36 0.56 6.57 16 27 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 28 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 29 H 0.05 3.05 6.06 -2.39 -0.01 3.04 16 30 H 0.06 2.07 8.10 -2.39 -0.02 2.05 16 31 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.03 0.96 6.48 -2.39 -0.02 0.95 16 33 H 0.34 8.58 8.08 -89.69 -0.73 7.85 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.09 1.43 8.08 -2.39 -0.02 1.41 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 37 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 40 H 0.11 3.22 7.24 -2.91 -0.02 3.20 16 41 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.07 2.13 7.43 -2.39 -0.02 2.12 16 43 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.06 2.34 7.93 -2.39 -0.02 2.32 16 Total: -1.00 -65.25 359.19 1.32 -63.93 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.28 Total: 15.84 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 3.80 Total: -15.37 kcal Atomic # 7 Polarization: -105.35 SS G_CDS: -4.71 Total: -110.06 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -0.08 Total: -2.02 kcal Total: -65.25 1.32 -63.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611198435.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.635 kcal (2) G-P(sol) polarization free energy of solvation -65.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds