Wall clock time and date at job start Tue Mar 31 2020 13:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99860 * 2 1 4 4 H 1.48497 * 109.47115 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47330 * 299.99873 * 3 2 1 6 6 H 1.48500 * 109.47089 * 59.99918 * 3 2 1 7 7 C 1.37878 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00153 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99648 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46937 * 179.97438 * 9 7 2 11 11 C 1.46957 * 111.00012 * 169.99670 * 10 9 7 12 12 C 1.53055 * 109.36246 * 183.18546 * 11 10 9 13 13 N 1.46954 * 109.36277 * 301.59436 * 12 11 10 14 14 C 1.46903 * 110.99851 * 183.19047 * 13 12 11 15 15 C 1.50699 * 109.47306 * 66.20290 * 14 13 12 16 16 C 1.32572 * 120.00114 * 127.20568 * 15 14 13 17 17 C 1.47805 * 119.99770 * 8.03093 * 16 15 14 18 18 C 1.39540 * 120.12549 * 217.92758 * 17 16 15 19 19 C 1.37957 * 119.86500 * 179.77183 * 18 17 16 20 20 C 1.38455 * 120.12895 * 0.50776 * 19 18 17 21 21 Cl 1.73604 * 119.87096 * 179.76724 * 20 19 18 22 22 C 1.38461 * 120.26244 * 359.74304 * 20 19 18 23 23 C 1.37950 * 120.12738 * 0.02562 * 22 20 19 24 24 C 1.46957 * 110.87872 * 59.32527 * 13 12 11 25 25 C 1.46961 * 110.99680 * 293.79539 * 10 9 7 26 26 H 0.96997 * 119.99865 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47853 * 59.99719 * 9 7 2 28 28 H 1.09001 * 109.46711 * 299.99333 * 9 7 2 29 29 H 1.08996 * 109.48948 * 303.15191 * 11 10 9 30 30 H 1.09001 * 109.49074 * 63.21798 * 11 10 9 31 31 H 1.08995 * 109.48880 * 61.56518 * 12 11 10 32 32 H 1.08997 * 109.48325 * 181.63185 * 12 11 10 33 33 H 1.09005 * 109.46991 * 186.20629 * 14 13 12 34 34 H 1.09003 * 109.47119 * 306.20080 * 14 13 12 35 35 H 1.07999 * 119.99716 * 307.20929 * 15 14 13 36 36 H 1.07998 * 120.00161 * 188.03571 * 16 15 14 37 37 H 1.08001 * 120.06658 * 0.02562 * 18 17 16 38 38 H 1.07998 * 119.93161 * 180.23456 * 19 18 17 39 39 H 1.07998 * 119.94230 * 179.97438 * 22 20 19 40 40 H 1.07997 * 120.06613 * 180.02562 * 23 22 20 41 41 H 1.09005 * 109.48809 * 180.71073 * 24 13 12 42 42 H 1.09001 * 109.49074 * 60.64239 * 24 13 12 43 43 H 1.09007 * 109.48849 * 296.78130 * 25 10 9 44 44 H 1.08991 * 109.49018 * 56.81895 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5210 -4.8940 0.2388 12 6 2.5566 -6.0187 0.3104 13 7 3.3194 -6.0592 -0.9450 14 6 4.2741 -7.1758 -0.9451 15 6 3.5207 -8.4809 -0.9450 16 6 3.7904 -9.4021 -1.8594 17 6 4.9447 -9.2277 -2.7659 18 6 4.8513 -9.6192 -4.1020 19 6 5.9305 -9.4497 -4.9446 20 6 7.1079 -8.9021 -4.4642 21 17 8.4638 -8.6973 -5.5289 22 6 7.2082 -8.5166 -3.1381 23 6 6.1341 -8.6768 -2.2874 24 6 4.0041 -4.7809 -1.1833 25 6 2.9687 -3.6562 -1.2549 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5572 -0.8896 28 1 0.6242 -2.5566 0.8904 29 1 0.9736 -4.8433 1.1800 30 1 0.8254 -5.0915 -0.5767 31 1 3.2358 -5.8352 1.1429 32 1 2.0487 -6.9717 0.4582 33 1 4.9007 -7.1180 -1.8352 34 1 4.9009 -7.1180 -0.0552 35 1 2.7609 -8.6657 -0.2000 36 1 3.1666 -10.2799 -1.9420 37 1 3.9347 -10.0503 -4.4768 38 1 5.8582 -9.7488 -5.9798 39 1 8.1292 -8.0904 -2.7688 40 1 6.2133 -8.3754 -1.2533 41 1 4.5516 -4.8316 -2.1245 42 1 4.6998 -4.5834 -0.3677 43 1 2.2894 -3.8396 -2.0875 44 1 3.4761 -2.7030 -1.4029 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615793343.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:02 Heat of formation + Delta-G solvation = 50.792070 kcal Electronic energy + Delta-G solvation = -23775.260611 eV Core-core repulsion = 20332.682081 eV Total energy + Delta-G solvation = -3442.578530 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.91138 -38.73244 -36.92519 -35.79369 -33.97292 -32.38639 -31.49366 -30.51367 -29.85487 -28.16586 -26.04830 -24.18198 -23.25214 -22.76796 -22.44633 -21.34111 -19.38900 -19.17061 -17.19037 -16.38222 -16.28169 -15.81945 -15.55811 -15.10369 -14.60049 -14.44468 -14.26185 -14.02924 -13.85518 -13.74475 -13.53168 -13.34861 -13.16759 -12.46819 -12.19506 -11.99827 -11.89993 -11.68676 -11.52071 -11.25948 -11.15806 -11.08613 -10.84495 -10.74019 -10.61466 -10.34830 -10.27905 -9.90020 -9.71161 -9.32088 -9.15770 -8.49187 -8.43456 -8.09563 -7.22185 -6.02463 -4.03808 0.57534 0.97628 1.84014 2.05211 3.30974 3.37346 3.38347 3.43050 4.18065 4.42490 4.44939 4.46260 4.53993 4.77837 4.94628 4.97076 5.06355 5.14147 5.25859 5.33307 5.35720 5.46666 5.53797 5.56805 5.64364 5.78552 5.81055 5.85515 5.90360 5.90693 6.04624 6.07866 6.20503 6.31110 6.41938 6.45233 6.55923 6.61047 6.70004 7.18385 7.22436 7.35780 7.38515 7.80755 8.09613 8.21420 8.55879 9.04082 9.60501 11.08493 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.016414 B = 0.002444 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.466508 B =11454.421079 C =12689.943430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.539 5.539 11 C 0.056 3.944 12 C 0.058 3.942 13 N -0.534 5.534 14 C 0.065 3.935 15 C -0.111 4.111 16 C -0.135 4.135 17 C -0.041 4.041 18 C -0.098 4.098 19 C -0.110 4.110 20 C -0.038 4.038 21 Cl -0.075 7.075 22 C -0.110 4.110 23 C -0.102 4.102 24 C 0.059 3.941 25 C 0.068 3.932 26 H 0.260 0.740 27 H -0.009 1.009 28 H 0.030 0.970 29 H 0.071 0.929 30 H 0.030 0.970 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.042 0.958 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.069 0.931 42 H 0.039 0.961 43 H 0.029 0.971 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.195 -22.564 -6.594 26.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.264 5.264 11 C -0.073 4.073 12 C -0.070 4.070 13 N -0.259 5.259 14 C -0.062 4.062 15 C -0.129 4.129 16 C -0.154 4.154 17 C -0.041 4.041 18 C -0.116 4.116 19 C -0.128 4.128 20 C -0.065 4.065 21 Cl -0.046 7.046 22 C -0.129 4.129 23 C -0.120 4.120 24 C -0.069 4.069 25 C -0.061 4.061 26 H 0.070 0.930 27 H 0.009 0.991 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.060 0.940 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.047 0.953 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.165 -22.393 -6.683 26.346 hybrid contribution 0.357 0.968 -0.094 1.036 sum 12.522 -21.425 -6.776 25.724 Atomic orbital electron populations 1.69969 1.06066 1.26648 1.51133 1.24996 0.94863 0.99323 0.95481 0.86454 0.80074 0.83467 0.77502 1.19666 1.21102 1.21032 1.21191 0.93476 0.89951 1.49871 0.91884 1.19704 0.90054 0.87318 0.96102 1.62286 1.28160 1.02762 1.33215 1.22062 0.94781 0.90024 1.00423 1.22218 0.96305 0.98520 0.89960 1.62237 1.25648 1.02982 1.35034 1.21669 0.93898 0.89229 1.01433 1.23303 0.99044 0.93782 0.96813 1.21544 0.97058 1.00802 0.96007 1.19184 0.93899 0.97334 0.93691 1.21237 0.98253 0.99563 0.92569 1.20990 0.91605 0.99612 1.00621 1.20992 0.89830 1.03901 0.91752 1.98374 1.44678 1.96059 1.65524 1.21000 0.99751 1.00447 0.91658 1.21415 0.91881 0.98469 1.00254 1.22241 0.96157 0.88437 1.00029 1.21982 0.95444 0.97351 0.91300 0.92987 0.99073 0.95240 0.91075 0.95165 0.94334 0.91188 0.89150 0.94015 0.86284 0.85762 0.84880 0.84944 0.84843 0.84671 0.91237 0.94315 0.95310 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.51 -14.26 8.47 -34.44 -0.29 -14.55 16 8 H 0.06 1.76 7.13 -52.49 -0.37 1.38 16 9 C 0.19 5.09 4.72 -4.97 -0.02 5.07 16 10 N -0.54 -11.79 4.70 -235.91 -1.11 -12.90 16 11 C 0.06 1.03 5.61 -3.76 -0.02 1.01 16 12 C 0.06 0.86 5.44 -3.77 -0.02 0.84 16 13 N -0.53 -7.80 4.70 -235.91 -1.11 -8.91 16 14 C 0.06 0.74 3.72 -4.97 -0.02 0.72 16 15 C -0.11 -1.09 9.16 -36.22 -0.33 -1.42 16 16 C -0.14 -1.19 9.79 -37.58 -0.37 -1.56 16 17 C -0.04 -0.38 5.15 -105.01 -0.54 -0.92 16 18 C -0.10 -0.83 9.78 -39.20 -0.38 -1.22 16 19 C -0.11 -0.94 9.81 -39.60 -0.39 -1.33 16 20 C -0.04 -0.35 6.32 -39.42 -0.25 -0.60 16 21 Cl -0.08 -0.67 28.95 -51.86 -1.50 -2.17 16 22 C -0.11 -0.97 9.81 -39.60 -0.39 -1.36 16 23 C -0.10 -0.91 7.32 -39.20 -0.29 -1.20 16 24 C 0.06 0.94 5.61 -3.77 -0.02 0.92 16 25 C 0.07 1.35 5.43 -3.77 -0.02 1.33 16 26 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 27 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 28 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 29 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.87 6.50 -51.93 -0.34 0.54 16 33 H 0.09 1.03 4.71 -51.93 -0.24 0.78 16 34 H 0.04 0.46 7.97 -51.93 -0.41 0.04 16 35 H 0.12 1.08 6.83 -52.49 -0.36 0.72 16 36 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.14 1.08 6.35 -52.49 -0.33 0.75 16 41 H 0.07 1.00 8.07 -51.93 -0.42 0.58 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.03 0.60 8.14 -51.92 -0.42 0.17 16 44 H 0.09 1.83 6.79 -51.93 -0.35 1.48 16 LS Contribution 365.77 15.07 5.51 5.51 Total: -1.00 -30.49 365.77 -12.55 -43.04 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -6.61 Total: -2.32 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -3.45 Total: -12.81 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -1.48 Total: -47.91 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.49 -12.55 -43.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615793343.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.833 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds