Wall clock time and date at job start Tue Mar 31 2020 12:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47060 * 2 1 4 4 C 1.37096 * 119.99970 * 264.35632 * 3 2 1 5 5 H 1.08008 * 119.99632 * 194.50737 * 4 3 2 6 6 C 1.38948 * 120.00261 * 14.50837 * 4 3 2 7 7 N 1.31412 * 119.99734 * 29.65471 * 6 4 3 8 8 Si 1.86798 * 120.00098 * 209.65450 * 6 4 3 9 9 H 1.48505 * 109.47031 * 89.99784 * 8 6 4 10 10 H 1.48494 * 109.47369 * 210.00012 * 8 6 4 11 11 H 1.48506 * 109.47269 * 330.00107 * 8 6 4 12 12 C 1.34776 * 119.99885 * 84.35912 * 3 2 1 13 13 O 1.21286 * 120.00161 * 4.27414 * 12 3 2 14 14 C 1.50707 * 120.00029 * 184.27596 * 12 3 2 15 15 H 1.09005 * 110.88209 * 27.11993 * 14 12 3 16 16 C 1.54631 * 110.97082 * 263.30934 * 14 12 3 17 17 C 1.51281 * 104.19412 * 217.08433 * 16 14 12 18 18 O 1.21286 * 124.94069 * 196.26952 * 17 16 14 19 19 N 1.34425 * 110.11736 * 16.24878 * 17 16 14 20 20 C 1.40022 * 124.34746 * 180.40886 * 19 17 16 21 21 C 1.38854 * 120.04776 * 0.90164 * 20 19 17 22 22 C 1.38107 * 119.95444 * 179.97438 * 21 20 19 23 23 C 1.38481 * 120.04651 * 0.27777 * 22 21 20 24 24 F 1.35100 * 119.95648 * 179.72743 * 23 22 21 25 25 C 1.38478 * 120.08778 * 359.44482 * 23 22 21 26 26 C 1.38109 * 120.04450 * 0.55627 * 25 23 22 27 27 C 1.46761 * 111.29701 * 0.67697 * 19 17 16 28 28 H 1.09007 * 109.47181 * 182.84679 * 1 2 3 29 29 H 1.09002 * 109.47000 * 302.84090 * 1 2 3 30 30 H 1.08993 * 109.47139 * 62.84554 * 1 2 3 31 31 H 1.09000 * 109.46980 * 239.99967 * 2 1 3 32 32 H 1.08996 * 109.47206 * 120.00393 * 2 1 3 33 33 H 0.96999 * 119.99487 * 180.02562 * 7 6 4 34 34 H 1.08997 * 110.48558 * 98.39989 * 16 14 12 35 35 H 1.09000 * 110.59557 * 335.81391 * 16 14 12 36 36 H 1.07993 * 120.02046 * 359.95169 * 21 20 19 37 37 H 1.07997 * 119.97859 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.97702 * 180.28077 * 25 23 22 39 39 H 1.07998 * 120.02168 * 179.74759 * 26 25 23 40 40 H 1.09004 * 110.24794 * 101.72001 * 27 19 17 41 41 H 1.09005 * 110.24435 * 223.71817 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3569 1.9885 -1.1815 5 1 2.9295 2.9043 -1.1733 6 6 1.9634 1.4261 -2.3896 7 7 0.8562 0.7213 -2.4565 8 14 3.0081 1.6717 -3.9185 9 1 4.0054 0.5759 -4.0179 10 1 2.1367 1.6584 -5.1209 11 1 3.7128 2.9761 -3.8323 12 6 2.1348 2.0547 1.1616 13 8 1.9097 1.4938 2.2131 14 6 2.5446 3.5050 1.1538 15 1 2.2561 3.9853 0.2188 16 6 4.0630 3.6523 1.4063 17 6 4.1784 4.8975 2.2576 18 8 5.2029 5.5196 2.4433 19 7 2.9802 5.2145 2.7780 20 6 2.7457 6.3189 3.6062 21 6 3.7854 7.1825 3.9244 22 6 3.5519 8.2715 4.7410 23 6 2.2831 8.4994 5.2470 24 9 2.0579 9.5622 6.0501 25 6 1.2436 7.6425 4.9262 26 6 1.4729 6.5523 4.1100 27 6 1.9508 4.2506 2.3718 28 1 -0.3634 -1.0265 0.0510 29 1 -0.3633 0.5573 0.8634 30 1 -0.3633 0.4690 -0.9143 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.5817 0.3284 -3.2998 34 1 4.5954 3.7835 0.4642 35 1 4.4482 2.7858 1.9437 36 1 4.7760 7.0025 3.5339 37 1 4.3603 8.9432 4.9891 38 1 0.2538 7.8245 5.3182 39 1 0.6628 5.8820 3.8633 40 1 1.7473 3.5515 3.1830 41 1 1.0378 4.7723 2.0847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730174748.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:38 Heat of formation + Delta-G solvation = -79.452768 kcal Electronic energy + Delta-G solvation = -26779.507488 eV Core-core repulsion = 22767.111648 eV Total energy + Delta-G solvation = -4012.395840 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -49.84525 -42.35989 -40.47628 -39.42813 -37.70311 -36.78609 -34.14744 -33.49708 -32.21474 -31.65768 -29.70690 -28.85439 -26.75955 -25.43340 -24.30778 -23.67038 -22.47735 -21.04897 -20.85688 -19.05358 -18.72774 -18.54336 -18.19834 -17.41738 -16.85848 -16.53930 -16.30236 -16.29006 -16.04045 -15.62019 -15.52062 -14.98111 -14.80057 -14.63007 -14.57746 -14.26060 -14.19091 -14.04643 -13.73171 -13.68023 -13.36598 -13.13416 -12.84188 -12.66902 -12.38272 -12.32119 -12.20095 -12.15459 -12.02714 -11.45799 -11.12647 -10.95805 -10.86304 -10.28545 -10.18154 -9.72390 -8.94019 -8.27347 -5.81594 -0.02795 0.18208 1.34365 1.42432 1.56190 1.59866 1.62960 1.97497 2.31452 2.60164 2.81129 3.06305 3.20324 3.29188 3.51623 3.78365 3.84379 3.87707 3.99016 4.16365 4.24291 4.37421 4.41213 4.51011 4.60930 4.66246 4.76339 4.81624 4.92128 4.94921 5.00242 5.04739 5.09923 5.14239 5.17332 5.38087 5.41072 5.45827 5.83976 5.86471 5.91141 5.98486 6.51905 6.82711 7.16655 7.60693 8.01738 8.67947 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019921 B = 0.003160 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.184160 B = 8858.061954 C = 9418.129226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.139 3.861 3 N -0.438 5.438 4 C -0.368 4.368 5 H 0.114 0.886 6 C 0.014 3.986 7 N -0.861 5.861 8 Si 0.970 3.030 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.260 1.260 12 C 0.455 3.545 13 O -0.634 6.634 14 C -0.096 4.096 15 H 0.120 0.880 16 C -0.128 4.128 17 C 0.523 3.477 18 O -0.539 6.539 19 N -0.553 5.553 20 C 0.145 3.855 21 C -0.147 4.147 22 C -0.122 4.122 23 C 0.057 3.943 24 F -0.145 7.145 25 C -0.115 4.115 26 C -0.128 4.128 27 C 0.116 3.884 28 H 0.049 0.951 29 H 0.019 0.981 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.038 0.962 33 H 0.273 0.727 34 H 0.125 0.875 35 H 0.106 0.894 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.166 0.834 39 H 0.156 0.844 40 H 0.090 0.910 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.233 9.718 6.538 11.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.015 3.985 3 N -0.154 5.154 4 C -0.494 4.494 5 H 0.132 0.868 6 C -0.192 4.192 7 N -0.497 5.497 8 Si 0.795 3.205 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.184 1.184 12 C 0.244 3.756 13 O -0.523 6.523 14 C -0.118 4.118 15 H 0.138 0.862 16 C -0.168 4.168 17 C 0.313 3.687 18 O -0.417 6.417 19 N -0.275 5.275 20 C 0.051 3.949 21 C -0.167 4.167 22 C -0.141 4.141 23 C 0.037 3.963 24 F -0.124 7.124 25 C -0.134 4.134 26 C -0.148 4.148 27 C -0.005 4.005 28 H 0.068 0.932 29 H 0.038 0.962 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.143 0.857 35 H 0.124 0.876 36 H 0.167 0.833 37 H 0.172 0.828 38 H 0.183 0.817 39 H 0.173 0.827 40 H 0.108 0.892 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.516 9.644 6.962 11.906 hybrid contribution 0.307 -0.164 -0.753 0.829 sum 0.823 9.481 6.210 11.363 Atomic orbital electron populations 1.22146 0.95664 1.00365 1.02377 1.20959 0.95367 0.83238 0.98911 1.43967 1.54392 1.11136 1.05861 1.19937 1.34896 1.12002 0.82587 0.86813 1.25879 0.95254 0.96657 1.01366 1.70093 1.18097 1.33614 1.27864 0.85275 0.78482 0.79177 0.77543 1.20660 1.21351 1.18373 1.19934 0.83767 0.88518 0.83387 1.90522 1.59164 1.70617 1.32012 1.21949 0.95298 0.94215 1.00335 0.86173 1.22208 0.96644 0.95988 1.01986 1.21248 0.82071 0.85897 0.79437 1.90564 1.32198 1.56685 1.62284 1.45914 1.11155 1.24673 1.45743 1.18131 0.95354 0.87818 0.93625 1.21485 1.00473 0.94617 1.00174 1.21173 0.96488 0.98496 0.97940 1.17812 0.95023 0.87530 0.95972 1.91476 1.95392 1.54245 1.71303 1.21190 0.99919 0.93719 0.98620 1.20911 0.95227 0.99375 0.99286 1.22275 0.90824 0.90275 0.97167 0.93185 0.96226 0.88688 0.91555 0.94342 0.91711 0.85701 0.87585 0.83266 0.82832 0.81694 0.82661 0.89196 0.87154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.28 9.79 71.98 0.70 -5.58 16 2 C 0.14 6.20 5.29 86.38 0.46 6.65 16 3 N -0.44 -19.51 2.64 -635.55 -1.67 -21.18 16 4 C -0.37 -16.08 8.86 84.04 0.74 -15.33 16 5 H 0.11 4.57 6.37 -2.91 -0.02 4.55 16 6 C 0.01 0.61 4.66 84.93 0.40 1.01 16 7 N -0.86 -39.31 8.81 21.66 0.19 -39.12 16 8 Si 0.97 35.36 29.64 68.60 2.03 37.40 16 9 H -0.28 -10.41 7.11 99.48 0.71 -9.70 16 10 H -0.29 -10.58 7.11 99.48 0.71 -9.88 16 11 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 12 C 0.45 18.94 6.65 87.66 0.58 19.53 16 13 O -0.63 -29.50 15.41 -3.05 -0.05 -29.55 16 14 C -0.10 -3.14 2.67 -10.42 -0.03 -3.16 16 15 H 0.12 3.82 6.55 -2.38 -0.02 3.80 16 16 C -0.13 -3.89 6.40 30.59 0.20 -3.69 16 17 C 0.52 16.54 7.92 87.90 0.70 17.24 16 18 O -0.54 -19.12 14.79 -3.05 -0.05 -19.17 16 19 N -0.55 -15.85 3.14 -627.29 -1.97 -17.82 16 20 C 0.14 3.85 6.61 38.13 0.25 4.10 16 21 C -0.15 -3.94 9.30 22.39 0.21 -3.73 16 22 C -0.12 -2.74 10.02 22.30 0.22 -2.52 16 23 C 0.06 1.23 7.30 22.39 0.16 1.40 16 24 F -0.15 -3.22 17.27 44.97 0.78 -2.44 16 25 C -0.12 -2.22 10.02 22.30 0.22 -2.00 16 26 C -0.13 -2.73 9.40 22.39 0.21 -2.52 16 27 C 0.12 3.28 5.88 86.89 0.51 3.79 16 28 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 4.37 5.53 -2.39 -0.01 4.36 16 31 H 0.07 3.05 6.49 -2.39 -0.02 3.04 16 32 H 0.04 1.72 7.54 -2.39 -0.02 1.70 16 33 H 0.27 11.86 8.31 -92.71 -0.77 11.09 16 34 H 0.12 3.46 8.14 -2.39 -0.02 3.44 16 35 H 0.11 3.37 7.89 -2.39 -0.02 3.35 16 36 H 0.15 4.49 5.20 -2.91 -0.02 4.48 16 37 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 38 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 39 H 0.16 2.75 6.87 -2.91 -0.02 2.73 16 40 H 0.09 2.79 6.95 -2.38 -0.02 2.78 16 41 H 0.11 2.57 7.48 -2.38 -0.02 2.55 16 Total: -1.00 -54.98 339.48 5.88 -49.10 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 1.08 Total: 27.61 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 5.54 Total: 15.19 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -3.45 Total: -78.13 kcal Atomic # 8 Polarization: -48.62 SS G_CDS: -0.09 Total: -48.72 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.78 Total: -2.44 kcal Atomic # 14 Polarization: 35.36 SS G_CDS: 2.03 Total: 37.40 kcal Total: -54.98 5.88 -49.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730174748.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.355 kcal (2) G-P(sol) polarization free energy of solvation -54.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds