Wall clock time and date at job start Tue Mar 31 2020 12:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47286 * 120.00075 * 2 1 3 5 5 H 1.07998 * 120.00122 * 119.99663 * 4 2 1 6 6 C 1.37878 * 119.99949 * 300.00148 * 4 2 1 7 7 N 1.31517 * 120.00213 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00198 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46995 * 89.99800 * 8 6 4 10 10 H 1.48492 * 109.47147 * 210.00011 * 8 6 4 11 11 H 1.48500 * 109.47010 * 330.00520 * 8 6 4 12 12 N 1.46495 * 109.47170 * 239.99978 * 2 1 3 13 13 C 1.34779 * 119.99821 * 85.00023 * 12 2 1 14 14 O 1.21280 * 120.00290 * 0.02562 * 13 12 2 15 15 C 1.50702 * 119.99841 * 179.97438 * 13 12 2 16 16 H 1.09002 * 110.85986 * 303.79088 * 15 13 12 17 17 C 1.54625 * 110.96718 * 67.62644 * 15 13 12 18 18 C 1.51288 * 104.25777 * 142.69652 * 17 15 13 19 19 O 1.21292 * 124.94366 * 163.99971 * 18 17 15 20 20 N 1.34413 * 110.11321 * 344.14607 * 18 17 15 21 21 C 1.40034 * 124.34887 * 179.44203 * 20 18 17 22 22 C 1.38858 * 120.04430 * 173.90810 * 21 20 18 23 23 C 1.38104 * 119.95471 * 180.02562 * 22 21 20 24 24 C 1.38477 * 120.04672 * 0.02562 * 23 22 21 25 25 F 1.35100 * 119.95812 * 179.69984 * 24 23 22 26 26 C 1.38475 * 120.08720 * 359.97379 * 24 23 22 27 27 C 1.38107 * 120.04647 * 0.02562 * 26 24 23 28 28 C 1.46764 * 111.29951 * 359.16574 * 20 18 17 29 29 H 1.08997 * 109.46831 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46648 * 299.99999 * 1 2 3 31 31 H 1.09002 * 109.46974 * 60.00005 * 1 2 3 32 32 H 0.96993 * 120.00290 * 180.02562 * 7 6 4 33 33 H 0.96998 * 120.00386 * 264.99634 * 12 2 1 34 34 H 1.09006 * 110.48244 * 261.58994 * 17 15 13 35 35 H 1.08991 * 110.48925 * 24.23548 * 17 15 13 36 36 H 1.08002 * 120.01906 * 359.97438 * 22 21 20 37 37 H 1.08001 * 119.97830 * 180.02562 * 23 22 21 38 38 H 1.08005 * 119.97579 * 179.97438 * 26 24 23 39 39 H 1.08006 * 120.02594 * 179.97438 * 27 26 24 40 40 H 1.09007 * 110.24398 * 136.29005 * 28 20 18 41 41 H 1.09003 * 110.24670 * 258.28216 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8596 3.5566 8 14 0.6259 1.2798 2.6542 9 1 -0.8020 0.8744 2.6993 10 1 0.9772 1.9952 3.9071 11 1 0.8491 2.1772 1.4923 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0182 -2.3571 14 8 1.8591 1.1587 -2.4115 15 6 2.6500 -0.7285 -3.5874 16 1 3.6211 -1.1871 -3.4011 17 6 1.6260 -1.7783 -4.0776 18 6 1.7068 -1.7014 -5.5863 19 8 1.2739 -2.5395 -6.3488 20 7 2.3308 -0.5707 -5.9588 21 6 2.5766 -0.2049 -7.2880 22 6 3.1152 1.0417 -7.5778 23 6 3.3564 1.4007 -8.8893 24 6 3.0611 0.5187 -9.9152 25 9 3.2921 0.8740 -11.1980 26 6 2.5240 -0.7250 -9.6283 27 6 2.2812 -1.0879 -8.3180 28 6 2.7156 0.2345 -4.7936 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.9026 -0.5285 4.4375 33 1 2.2491 -1.6317 -1.1526 34 1 1.9028 -2.7731 -3.7282 35 1 0.6227 -1.5196 -3.7394 36 1 3.3445 1.7304 -6.7780 37 1 3.7757 2.3701 -9.1151 38 1 2.2939 -1.4114 -10.4298 39 1 1.8619 -2.0578 -8.0947 40 1 3.7292 0.6161 -4.9169 41 1 2.0156 1.0587 -4.6569 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730216749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:35 Heat of formation + Delta-G solvation = -78.377348 kcal Electronic energy + Delta-G solvation = -26086.119885 eV Core-core repulsion = 22073.770679 eV Total energy + Delta-G solvation = -4012.349206 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.07842 -41.53958 -39.43260 -38.59625 -36.69587 -35.16939 -33.44627 -32.42597 -31.48773 -30.17369 -28.85767 -28.06495 -25.32464 -24.42894 -23.51619 -22.45691 -20.93644 -20.17602 -19.73362 -18.19798 -17.88103 -17.70453 -16.83460 -16.44690 -15.82470 -15.77424 -15.57625 -15.48353 -14.82524 -14.78992 -14.23119 -14.15384 -13.89444 -13.84252 -13.48007 -13.44685 -13.22289 -13.00574 -12.84089 -12.57804 -12.30750 -11.88707 -11.83242 -11.61950 -11.47510 -11.34381 -10.90832 -10.36552 -10.29003 -10.09294 -9.80511 -9.46305 -9.36622 -9.34909 -8.86198 -8.35692 -8.15693 -6.29572 -4.33235 0.74638 0.90303 2.20764 2.38280 2.87308 3.16600 3.29288 3.31657 3.34080 3.52388 3.92172 4.03118 4.09894 4.23224 4.46044 4.52884 4.58143 4.67782 4.87583 4.97957 5.05050 5.10194 5.18182 5.24811 5.33900 5.46536 5.60766 5.65664 5.78234 5.81691 5.94687 6.15794 6.19318 6.25025 6.43796 6.65472 6.67740 6.72590 7.03169 7.11799 7.38297 7.68064 7.97747 8.36166 8.60287 8.72340 9.30267 10.82415 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.031912 B = 0.002468 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.189711 B =11340.951515 C =11796.496937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.236 3.764 3 H 0.050 0.950 4 C -0.538 4.538 5 H 0.081 0.919 6 C 0.079 3.921 7 N -0.890 5.890 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.693 5.693 13 C 0.515 3.485 14 O -0.549 6.549 15 C -0.124 4.124 16 H 0.120 0.880 17 C -0.142 4.142 18 C 0.523 3.477 19 O -0.509 6.509 20 N -0.558 5.558 21 C 0.162 3.838 22 C -0.129 4.129 23 C -0.124 4.124 24 C 0.067 3.933 25 F -0.143 7.143 26 C -0.124 4.124 27 C -0.130 4.130 28 C 0.109 3.891 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.035 0.965 32 H 0.268 0.732 33 H 0.398 0.602 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.164 0.836 40 H 0.093 0.907 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.207 0.538 -21.560 21.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.133 3.867 3 H 0.068 0.932 4 C -0.576 4.576 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.527 5.527 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.340 5.340 13 C 0.298 3.702 14 O -0.428 6.428 15 C -0.146 4.146 16 H 0.138 0.862 17 C -0.182 4.182 18 C 0.313 3.687 19 O -0.385 6.385 20 N -0.281 5.281 21 C 0.068 3.932 22 C -0.150 4.150 23 C -0.143 4.143 24 C 0.047 3.953 25 F -0.122 7.122 26 C -0.143 4.143 27 C -0.150 4.150 28 C -0.013 4.013 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.231 0.769 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.181 0.819 40 H 0.112 0.888 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.773 0.924 -21.764 21.856 hybrid contribution -0.369 0.430 0.173 0.593 sum 1.404 1.354 -21.591 21.679 Atomic orbital electron populations 1.22464 0.99162 1.00991 0.99440 1.19155 0.90214 0.94702 0.82608 0.93204 1.21006 1.33552 1.14562 0.88467 0.90110 1.24835 0.95447 0.96698 0.95533 1.69858 1.44668 1.40030 0.98110 0.86879 0.80549 0.83545 0.77531 1.20276 1.22104 1.18660 1.46179 1.64338 1.13959 1.09550 1.19830 0.78800 0.87246 0.84280 1.90683 1.51439 1.15813 1.84865 1.22282 1.01510 0.96637 0.94165 0.86170 1.22357 1.02231 1.01872 0.91726 1.21045 0.76069 0.80103 0.91517 1.90627 1.47567 1.41781 1.58519 1.45907 1.55516 1.21975 1.04729 1.17827 0.98475 0.94184 0.82754 1.20706 1.02258 0.95174 0.96820 1.20922 1.01846 1.00081 0.91449 1.17690 1.03819 0.95124 0.78712 1.91488 1.92723 1.92229 1.35727 1.21054 1.00300 0.95412 0.97526 1.21512 1.01445 1.01643 0.90436 1.22236 1.03390 0.94202 0.81458 0.92688 0.93327 0.94542 0.92178 0.76860 0.86239 0.86513 0.84318 0.84267 0.84357 0.81869 0.88828 0.87740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 8.96 37.16 0.33 -3.00 16 2 C 0.24 5.12 2.15 -69.08 -0.15 4.97 16 3 H 0.05 1.20 6.63 -51.93 -0.34 0.86 16 4 C -0.54 -13.59 9.31 -34.44 -0.32 -13.91 16 5 H 0.08 2.14 7.98 -52.49 -0.42 1.73 16 6 C 0.08 2.11 5.45 -17.82 -0.10 2.01 16 7 N -0.89 -25.36 13.96 55.43 0.77 -24.59 16 8 Si 0.89 20.75 24.37 -169.99 -4.14 16.61 16 9 H -0.28 -6.29 6.87 56.52 0.39 -5.90 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.26 -6.05 6.53 56.52 0.37 -5.68 16 12 N -0.69 -11.64 5.07 -54.93 -0.28 -11.92 16 13 C 0.52 7.79 7.02 -10.98 -0.08 7.71 16 14 O -0.55 -10.29 15.17 5.56 0.08 -10.21 16 15 C -0.12 -1.26 3.55 -90.14 -0.32 -1.58 16 16 H 0.12 0.97 8.14 -51.93 -0.42 0.54 16 17 C -0.14 -1.36 6.41 -26.74 -0.17 -1.54 16 18 C 0.52 6.11 7.92 -10.86 -0.09 6.02 16 19 O -0.51 -7.21 14.82 5.55 0.08 -7.13 16 20 N -0.56 -5.99 3.14 -112.24 -0.35 -6.34 16 21 C 0.16 1.75 6.60 -83.65 -0.55 1.19 16 22 C -0.13 -1.18 9.40 -39.40 -0.37 -1.55 16 23 C -0.12 -1.09 10.02 -39.54 -0.40 -1.49 16 24 C 0.07 0.66 7.30 -39.41 -0.29 0.37 16 25 F -0.14 -1.50 17.27 2.25 0.04 -1.46 16 26 C -0.12 -1.20 10.02 -39.54 -0.40 -1.60 16 27 C -0.13 -1.43 9.28 -39.40 -0.37 -1.80 16 28 C 0.11 1.07 5.63 -3.12 -0.02 1.06 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.40 5.72 8.54 -40.82 -0.35 5.37 16 34 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.12 1.17 7.89 -51.93 -0.41 0.76 16 36 H 0.14 1.03 7.01 -52.49 -0.37 0.66 16 37 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 39 H 0.16 1.97 5.27 -52.48 -0.28 1.69 16 40 H 0.09 0.75 7.70 -51.92 -0.40 0.35 16 41 H 0.10 1.17 6.96 -51.93 -0.36 0.81 16 LS Contribution 341.57 15.07 5.15 5.15 Total: -1.00 -31.25 341.57 -6.74 -37.99 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -4.82 Total: 5.00 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -3.27 Total: -3.11 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.14 Total: -42.84 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: 0.17 Total: -17.33 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.14 Total: 16.61 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.25 -6.74 -37.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730216749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.392 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds