Wall clock time and date at job start Tue Mar 31 2020 12:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47286 * 120.00075 * 2 1 3 5 5 H 1.07998 * 120.00122 * 119.99663 * 4 2 1 6 6 C 1.37878 * 119.99949 * 300.00148 * 4 2 1 7 7 N 1.31517 * 120.00213 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00198 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46995 * 89.99800 * 8 6 4 10 10 H 1.48492 * 109.47147 * 210.00011 * 8 6 4 11 11 H 1.48500 * 109.47010 * 330.00520 * 8 6 4 12 12 N 1.46495 * 109.47170 * 239.99978 * 2 1 3 13 13 C 1.34779 * 119.99821 * 85.00023 * 12 2 1 14 14 O 1.21280 * 120.00290 * 0.02562 * 13 12 2 15 15 C 1.50702 * 119.99841 * 179.97438 * 13 12 2 16 16 H 1.09002 * 110.85986 * 303.79088 * 15 13 12 17 17 C 1.54625 * 110.96718 * 67.62644 * 15 13 12 18 18 C 1.51288 * 104.25777 * 142.69652 * 17 15 13 19 19 O 1.21292 * 124.94366 * 163.99971 * 18 17 15 20 20 N 1.34413 * 110.11321 * 344.14607 * 18 17 15 21 21 C 1.40034 * 124.34887 * 179.44203 * 20 18 17 22 22 C 1.38858 * 120.04430 * 173.90810 * 21 20 18 23 23 C 1.38104 * 119.95471 * 180.02562 * 22 21 20 24 24 C 1.38477 * 120.04672 * 0.02562 * 23 22 21 25 25 F 1.35100 * 119.95812 * 179.69984 * 24 23 22 26 26 C 1.38475 * 120.08720 * 359.97379 * 24 23 22 27 27 C 1.38107 * 120.04647 * 0.02562 * 26 24 23 28 28 C 1.46764 * 111.29951 * 359.16574 * 20 18 17 29 29 H 1.08997 * 109.46831 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46648 * 299.99999 * 1 2 3 31 31 H 1.09002 * 109.46974 * 60.00005 * 1 2 3 32 32 H 0.96993 * 120.00290 * 180.02562 * 7 6 4 33 33 H 0.96998 * 120.00386 * 264.99634 * 12 2 1 34 34 H 1.09006 * 110.48244 * 261.58994 * 17 15 13 35 35 H 1.08991 * 110.48925 * 24.23548 * 17 15 13 36 36 H 1.08002 * 120.01906 * 359.97438 * 22 21 20 37 37 H 1.08001 * 119.97830 * 180.02562 * 23 22 21 38 38 H 1.08005 * 119.97579 * 179.97438 * 26 24 23 39 39 H 1.08006 * 120.02594 * 179.97438 * 27 26 24 40 40 H 1.09007 * 110.24398 * 136.29005 * 28 20 18 41 41 H 1.09003 * 110.24670 * 258.28216 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8596 3.5566 8 14 0.6259 1.2798 2.6542 9 1 -0.8020 0.8744 2.6993 10 1 0.9772 1.9952 3.9071 11 1 0.8491 2.1772 1.4923 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0182 -2.3571 14 8 1.8591 1.1587 -2.4115 15 6 2.6500 -0.7285 -3.5874 16 1 3.6211 -1.1871 -3.4011 17 6 1.6260 -1.7783 -4.0776 18 6 1.7068 -1.7014 -5.5863 19 8 1.2739 -2.5395 -6.3488 20 7 2.3308 -0.5707 -5.9588 21 6 2.5766 -0.2049 -7.2880 22 6 3.1152 1.0417 -7.5778 23 6 3.3564 1.4007 -8.8893 24 6 3.0611 0.5187 -9.9152 25 9 3.2921 0.8740 -11.1980 26 6 2.5240 -0.7250 -9.6283 27 6 2.2812 -1.0879 -8.3180 28 6 2.7156 0.2345 -4.7936 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.9026 -0.5285 4.4375 33 1 2.2491 -1.6317 -1.1526 34 1 1.9028 -2.7731 -3.7282 35 1 0.6227 -1.5196 -3.7394 36 1 3.3445 1.7304 -6.7780 37 1 3.7757 2.3701 -9.1151 38 1 2.2939 -1.4114 -10.4298 39 1 1.8619 -2.0578 -8.0947 40 1 3.7292 0.6161 -4.9169 41 1 2.0156 1.0587 -4.6569 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730216749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:34 Heat of formation + Delta-G solvation = -98.780797 kcal Electronic energy + Delta-G solvation = -26087.004645 eV Core-core repulsion = 22073.770679 eV Total energy + Delta-G solvation = -4013.233966 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.85989 -42.41255 -40.61808 -39.45237 -37.69655 -36.73369 -34.54165 -34.06677 -32.22398 -31.68915 -29.75842 -28.89071 -27.19020 -25.43864 -24.31300 -23.43093 -22.31163 -21.06879 -21.00716 -19.29334 -18.83396 -18.56772 -18.19552 -17.55376 -17.27606 -16.83398 -16.55888 -16.30519 -15.96331 -15.91338 -15.51176 -15.02556 -14.93327 -14.72694 -14.68294 -14.55412 -14.29673 -14.17609 -14.07508 -13.83729 -13.45613 -13.34162 -13.18805 -12.75703 -12.54059 -12.44841 -12.21590 -12.11121 -11.59740 -11.23498 -11.16171 -11.03752 -10.84504 -10.65272 -10.19035 -9.86301 -8.95764 -8.34950 -6.40495 -0.03637 0.17268 1.30553 1.35128 1.38991 1.47026 1.55203 1.69104 2.28567 2.35079 2.59071 3.01912 3.05263 3.24833 3.28937 3.69044 3.76610 3.81250 3.85331 4.14737 4.18574 4.22819 4.37948 4.47860 4.50502 4.58644 4.62827 4.73024 4.75892 4.86789 4.91815 5.03405 5.04738 5.09891 5.16794 5.36379 5.38679 5.47018 5.66111 5.86638 5.89563 6.15394 6.62764 6.81458 6.87276 7.22030 7.43430 8.80065 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.031912 B = 0.002468 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.189711 B =11340.951515 C =11796.496937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.242 3.758 3 H 0.027 0.973 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.028 3.972 7 N -0.935 5.935 8 Si 0.937 3.063 9 H -0.264 1.264 10 H -0.297 1.297 11 H -0.258 1.258 12 N -0.694 5.694 13 C 0.519 3.481 14 O -0.583 6.583 15 C -0.108 4.108 16 H 0.152 0.848 17 C -0.135 4.135 18 C 0.518 3.482 19 O -0.540 6.540 20 N -0.555 5.555 21 C 0.145 3.855 22 C -0.125 4.125 23 C -0.118 4.118 24 C 0.056 3.944 25 F -0.147 7.147 26 C -0.125 4.125 27 C -0.144 4.144 28 C 0.110 3.890 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.048 0.952 32 H 0.269 0.731 33 H 0.411 0.589 34 H 0.143 0.857 35 H 0.114 0.886 36 H 0.159 0.841 37 H 0.163 0.837 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.118 0.882 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.400 1.242 -22.884 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.137 3.863 3 H 0.045 0.955 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.172 4.172 7 N -0.574 5.574 8 Si 0.765 3.235 9 H -0.190 1.190 10 H -0.225 1.225 11 H -0.182 1.182 12 N -0.342 5.342 13 C 0.305 3.695 14 O -0.464 6.464 15 C -0.129 4.129 16 H 0.170 0.830 17 C -0.174 4.174 18 C 0.309 3.691 19 O -0.418 6.418 20 N -0.277 5.277 21 C 0.051 3.949 22 C -0.145 4.145 23 C -0.138 4.138 24 C 0.036 3.964 25 F -0.126 7.126 26 C -0.144 4.144 27 C -0.164 4.164 28 C -0.011 4.011 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.247 0.753 34 H 0.161 0.839 35 H 0.132 0.868 36 H 0.176 0.824 37 H 0.181 0.819 38 H 0.169 0.831 39 H 0.167 0.833 40 H 0.136 0.864 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.975 1.623 -23.123 23.264 hybrid contribution -0.375 0.206 0.491 0.651 sum 1.600 1.829 -22.632 22.762 Atomic orbital electron populations 1.22367 0.97951 1.01777 0.99480 1.18762 0.91061 0.93354 0.83133 0.95496 1.21281 1.32130 1.13558 0.89840 0.92189 1.25553 0.96886 0.99249 0.95527 1.69974 1.46794 1.41954 0.98663 0.86036 0.79677 0.80588 0.77215 1.18957 1.22488 1.18229 1.45968 1.64813 1.14555 1.08882 1.20481 0.77435 0.86793 0.84785 1.90675 1.52627 1.17618 1.85502 1.22180 1.02787 0.96387 0.91562 0.83034 1.22376 1.01958 1.02918 0.90195 1.21365 0.75669 0.79975 0.92129 1.90621 1.48903 1.42904 1.59350 1.45940 1.55123 1.21707 1.04980 1.18046 0.99194 0.94942 0.82696 1.20923 1.01376 0.94696 0.97516 1.21207 1.00841 1.00737 0.90967 1.17866 1.04234 0.95472 0.78845 1.91478 1.92801 1.92252 1.36077 1.21182 0.99932 0.95811 0.97493 1.21441 1.02365 1.01432 0.91157 1.22274 1.04431 0.93510 0.80894 0.91564 0.94426 0.93267 0.92192 0.75341 0.83899 0.86775 0.82363 0.81941 0.83109 0.83273 0.86405 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.17 8.96 71.98 0.65 -5.53 16 2 C 0.24 10.20 2.15 44.25 0.10 10.29 16 3 H 0.03 1.28 6.63 -2.38 -0.02 1.27 16 4 C -0.53 -26.66 9.31 25.60 0.24 -26.43 16 5 H 0.06 3.20 7.98 -2.91 -0.02 3.18 16 6 C 0.03 1.47 5.45 84.65 0.46 1.93 16 7 N -0.93 -53.95 13.96 21.45 0.30 -53.65 16 8 Si 0.94 42.52 24.37 68.60 1.67 44.19 16 9 H -0.26 -11.34 6.87 99.48 0.68 -10.66 16 10 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 11 H -0.26 -11.42 6.53 99.48 0.65 -10.77 16 12 N -0.69 -22.02 5.07 -446.10 -2.26 -24.28 16 13 C 0.52 14.55 7.02 87.66 0.62 15.17 16 14 O -0.58 -20.90 15.17 -3.03 -0.05 -20.94 16 15 C -0.11 -1.87 3.55 -10.48 -0.04 -1.90 16 16 H 0.15 1.79 8.14 -2.39 -0.02 1.77 16 17 C -0.13 -2.25 6.41 30.59 0.20 -2.05 16 18 C 0.52 11.32 7.92 87.90 0.70 12.01 16 19 O -0.54 -15.01 14.82 -3.07 -0.05 -15.05 16 20 N -0.56 -10.84 3.14 -627.60 -1.97 -12.81 16 21 C 0.15 2.91 6.60 38.12 0.25 3.16 16 22 C -0.12 -1.97 9.40 22.39 0.21 -1.76 16 23 C -0.12 -1.80 10.02 22.30 0.22 -1.58 16 24 C 0.06 1.02 7.30 22.38 0.16 1.19 16 25 F -0.15 -2.88 17.27 44.97 0.78 -2.10 16 26 C -0.12 -2.33 10.02 22.30 0.22 -2.11 16 27 C -0.14 -3.07 9.28 22.38 0.21 -2.87 16 28 C 0.11 1.87 5.63 86.83 0.49 2.36 16 29 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.04 1.55 3.27 -2.39 -0.01 1.54 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 33 H 0.41 10.93 8.54 -92.71 -0.79 10.14 16 34 H 0.14 1.74 8.14 -2.38 -0.02 1.73 16 35 H 0.11 2.04 7.89 -2.39 -0.02 2.02 16 36 H 0.16 1.83 7.01 -2.91 -0.02 1.81 16 37 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 38 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 39 H 0.15 3.65 5.27 -2.91 -0.02 3.63 16 40 H 0.12 1.46 7.70 -2.38 -0.02 1.44 16 41 H 0.09 1.87 6.96 -2.39 -0.02 1.85 16 Total: -1.00 -68.03 341.57 3.32 -64.71 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.22 Total: 18.04 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 4.68 Total: 1.89 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -3.93 Total: -90.74 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -0.09 Total: -35.99 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.78 Total: -2.10 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.67 Total: 44.19 kcal Total: -68.03 3.32 -64.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730216749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.067 kcal (2) G-P(sol) polarization free energy of solvation -68.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds