Wall clock time and date at job start Tue Mar 31 2020 13:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86805 * 120.00149 * 2 1 4 4 H 1.48501 * 109.47330 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47196 * 300.00207 * 3 2 1 6 6 H 1.48500 * 109.46821 * 59.99961 * 3 2 1 7 7 C 1.37880 * 120.00441 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00498 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99499 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47043 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00225 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99715 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00122 * 180.02562 * 11 10 9 14 14 N 1.46905 * 109.47105 * 179.97438 * 13 11 10 15 15 C 1.46471 * 110.99982 * 64.01674 * 14 13 11 16 16 C 1.53249 * 109.86021 * 197.76546 * 15 14 13 17 17 S 1.81890 * 108.50562 * 297.99805 * 16 15 14 18 18 C 1.81900 * 101.91767 * 51.30526 * 17 16 15 19 19 C 1.46463 * 110.99922 * 189.99724 * 14 13 11 20 20 H 1.08994 * 109.40888 * 282.35222 * 19 14 13 21 21 C 1.50701 * 109.34387 * 42.15707 * 19 14 13 22 22 C 1.38238 * 119.99891 * 40.08215 * 21 19 14 23 23 C 1.38233 * 119.99910 * 179.77269 * 22 21 19 24 24 C 1.38231 * 119.99977 * 0.47564 * 23 22 21 25 25 C 1.38237 * 120.00051 * 359.79804 * 24 23 22 26 26 C 1.38230 * 120.00062 * 220.35667 * 21 19 14 27 27 H 0.97004 * 120.00296 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47110 * 60.00066 * 9 7 2 29 29 H 1.09007 * 109.47071 * 299.99774 * 9 7 2 30 30 H 0.96997 * 119.99943 * 0.02562 * 10 9 7 31 31 H 1.08997 * 109.47327 * 60.00005 * 13 11 10 32 32 H 1.08990 * 109.47036 * 299.99770 * 13 11 10 33 33 H 1.09004 * 109.40672 * 317.88792 * 15 14 13 34 34 H 1.08995 * 109.40802 * 77.72530 * 15 14 13 35 35 H 1.09004 * 109.62842 * 57.70245 * 16 15 14 36 36 H 1.08997 * 109.63052 * 178.09263 * 16 15 14 37 37 H 1.08998 * 109.63767 * 188.98869 * 18 17 16 38 38 H 1.09005 * 109.62935 * 68.39334 * 18 17 16 39 39 H 1.07998 * 120.00086 * 359.97438 * 22 21 19 40 40 H 1.08001 * 120.00267 * 180.25813 * 23 22 21 41 41 H 1.08007 * 120.00319 * 179.77099 * 24 23 22 42 42 H 1.07998 * 120.00035 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.00379 * 0.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0018 11 6 1.7538 -4.8834 -0.0015 12 8 0.5614 -5.1050 0.0003 13 6 2.7331 -6.0288 -0.0022 14 7 1.9986 -7.3010 -0.0010 15 6 1.2161 -7.4564 -1.2294 16 6 0.1421 -8.5313 -1.0300 17 16 0.9674 -10.1143 -0.6813 18 6 2.0979 -9.6590 0.6690 19 6 2.9026 -8.4288 0.2357 20 1 3.4460 -8.6561 -0.6813 21 6 3.8825 -8.0638 1.3210 22 6 3.4568 -7.3482 2.4245 23 6 4.3546 -7.0175 3.4222 24 6 5.6801 -7.3937 3.3117 25 6 6.1070 -8.1043 2.2055 26 6 5.2081 -8.4395 1.2102 27 1 -0.4851 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8898 30 1 3.1566 -3.4354 -0.0021 31 1 3.3604 -5.9711 0.8874 32 1 3.3591 -5.9710 -0.8925 33 1 0.7382 -6.5085 -1.4768 34 1 1.8764 -7.7526 -2.0444 35 1 -0.4972 -8.2589 -0.1903 36 1 -0.4595 -8.6201 -1.9346 37 1 2.7766 -10.4871 0.8735 38 1 1.5227 -9.4235 1.5645 39 1 2.4221 -7.0504 2.5087 40 1 4.0212 -6.4620 4.2863 41 1 6.3824 -7.1321 4.0894 42 1 7.1427 -8.3979 2.1190 43 1 5.5418 -8.9944 0.3458 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734487401.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:32 Heat of formation + Delta-G solvation = 2.655262 kcal Electronic energy + Delta-G solvation = -24761.502296 eV Core-core repulsion = 21318.880104 eV Total energy + Delta-G solvation = -3442.622192 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.38807 -38.83997 -37.22267 -34.21136 -32.90703 -32.38864 -31.37791 -30.78024 -29.54481 -27.72510 -25.61373 -24.08839 -23.03432 -22.41131 -21.98896 -20.31194 -19.66424 -17.42897 -17.19995 -16.49730 -16.15443 -15.72230 -15.40722 -15.22600 -14.90084 -14.77951 -14.30927 -14.16197 -14.01209 -13.79073 -13.54370 -13.38514 -13.03282 -12.77981 -12.48597 -12.35284 -12.02255 -11.95074 -11.71494 -11.64189 -11.47456 -11.14258 -10.98238 -10.94360 -10.65999 -10.33535 -9.89204 -9.40755 -9.12522 -9.01998 -8.81047 -8.76129 -8.39773 -7.89832 -7.77124 -6.19555 -4.26435 1.11452 1.24811 1.71946 2.43392 3.21259 3.28292 3.30882 3.32097 3.42243 3.61978 4.16969 4.35861 4.48040 4.70207 4.73639 4.86181 4.87819 5.00392 5.04353 5.15498 5.16901 5.18192 5.30559 5.36772 5.40625 5.48452 5.49794 5.59996 5.69243 5.79032 5.89669 5.92835 5.97860 6.28547 6.39146 6.40121 6.79868 6.83159 7.00598 7.28240 7.40843 7.48516 7.64303 7.94046 8.59537 8.75622 9.07118 9.40494 10.90628 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012926 B = 0.003565 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.579170 B = 7852.727706 C = 9598.030224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.252 3.748 10 N -0.713 5.713 11 C 0.499 3.501 12 O -0.540 6.540 13 C 0.028 3.972 14 N -0.525 5.525 15 C 0.054 3.946 16 C -0.065 4.065 17 S -0.285 6.285 18 C -0.060 4.060 19 C 0.129 3.871 20 H 0.063 0.937 21 C -0.087 4.087 22 C -0.095 4.095 23 C -0.121 4.121 24 C -0.117 4.117 25 C -0.123 4.123 26 C -0.112 4.112 27 H 0.265 0.735 28 H 0.026 0.974 29 H 0.027 0.973 30 H 0.390 0.610 31 H 0.112 0.888 32 H 0.058 0.942 33 H 0.111 0.889 34 H 0.041 0.959 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.134 0.866 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.607 -18.980 2.386 21.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.362 5.362 11 C 0.283 3.717 12 O -0.418 6.418 13 C -0.103 4.103 14 N -0.250 5.250 15 C -0.075 4.075 16 C -0.213 4.213 17 S -0.057 6.057 18 C -0.209 4.209 19 C 0.019 3.981 20 H 0.080 0.920 21 C -0.089 4.089 22 C -0.113 4.113 23 C -0.139 4.139 24 C -0.135 4.135 25 C -0.141 4.141 26 C -0.131 4.131 27 H 0.075 0.925 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.222 0.778 31 H 0.130 0.870 32 H 0.076 0.924 33 H 0.129 0.871 34 H 0.059 0.941 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.152 0.848 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.038 -20.010 2.240 22.071 hybrid contribution 1.612 2.195 -0.030 2.723 sum 10.650 -17.816 2.210 20.874 Atomic orbital electron populations 1.69976 1.06108 1.27210 1.48950 1.24943 0.94896 0.99440 0.94678 0.86378 0.79852 0.83004 0.77784 1.19631 1.20783 1.20771 1.21262 0.93289 0.90458 1.53144 0.91884 1.19090 0.88236 0.81893 0.97679 1.46458 1.11120 1.06073 1.72520 1.20261 0.89479 0.84102 0.77861 1.90631 1.16569 1.84535 1.50115 1.22230 0.95816 0.88665 1.03544 1.60761 1.25587 1.00460 1.38157 1.22380 0.94776 1.01062 0.89241 1.23491 0.99706 0.92207 1.05916 1.86796 1.51031 1.20036 1.47839 1.23501 0.99012 0.99293 0.99080 1.20707 0.90852 0.90529 0.95994 0.91967 1.19719 0.93702 0.99401 0.96054 1.21198 1.00767 0.96686 0.92650 1.21244 0.93524 1.00054 0.99080 1.21202 0.96035 0.98266 0.98032 1.21087 0.99445 0.99183 0.94345 1.20999 0.92540 1.00321 0.99225 0.92488 0.95622 0.95523 0.77820 0.87019 0.92439 0.87083 0.94109 0.88478 0.87578 0.87614 0.88772 0.84822 0.85798 0.86137 0.86097 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.80 13.28 55.43 0.74 -25.06 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.54 -14.52 9.28 -34.44 -0.32 -14.84 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.53 5.43 -5.19 -0.03 6.50 16 10 N -0.71 -14.55 5.55 -61.47 -0.34 -14.89 16 11 C 0.50 9.49 7.37 -10.99 -0.08 9.41 16 12 O -0.54 -12.17 14.33 5.55 0.08 -12.09 16 13 C 0.03 0.40 4.76 -4.97 -0.02 0.37 16 14 N -0.52 -7.02 3.58 -229.87 -0.82 -7.84 16 15 C 0.05 0.74 4.95 -3.93 -0.02 0.72 16 16 C -0.06 -0.81 6.69 37.29 0.25 -0.56 16 17 S -0.28 -3.39 22.39 -107.50 -2.41 -5.80 16 18 C -0.06 -0.64 5.95 37.29 0.22 -0.42 16 19 C 0.13 1.42 2.10 -68.97 -0.14 1.27 16 20 H 0.06 0.68 7.77 -51.93 -0.40 0.27 16 21 C -0.09 -0.91 3.68 -104.62 -0.38 -1.29 16 22 C -0.09 -1.07 7.10 -39.58 -0.28 -1.35 16 23 C -0.12 -1.23 10.05 -39.59 -0.40 -1.63 16 24 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 25 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 26 C -0.11 -1.03 9.67 -39.59 -0.38 -1.41 16 27 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.39 6.90 8.32 -40.82 -0.34 6.56 16 31 H 0.11 1.49 4.63 -51.93 -0.24 1.25 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.11 1.81 5.61 -51.93 -0.29 1.52 16 34 H 0.04 0.51 7.91 -51.93 -0.41 0.10 16 35 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.13 1.71 7.59 -52.49 -0.40 1.31 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.12 0.92 8.03 -52.49 -0.42 0.49 16 LS Contribution 359.49 15.07 5.42 5.42 Total: -1.00 -30.72 359.49 -11.11 -41.83 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -6.27 Total: 7.33 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -2.48 Total: -4.50 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -0.43 Total: -47.80 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.08 Total: -12.09 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -2.41 Total: -5.80 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.72 -11.11 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734487401.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.487 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds