Wall clock time and date at job start Tue Mar 31 2020 13:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86805 * 120.00149 * 2 1 4 4 H 1.48501 * 109.47330 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47196 * 300.00207 * 3 2 1 6 6 H 1.48500 * 109.46821 * 59.99961 * 3 2 1 7 7 C 1.37880 * 120.00441 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00498 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99499 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47043 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00225 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99715 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00122 * 180.02562 * 11 10 9 14 14 N 1.46905 * 109.47105 * 179.97438 * 13 11 10 15 15 C 1.46471 * 110.99982 * 64.01674 * 14 13 11 16 16 C 1.53249 * 109.86021 * 197.76546 * 15 14 13 17 17 S 1.81890 * 108.50562 * 297.99805 * 16 15 14 18 18 C 1.81900 * 101.91767 * 51.30526 * 17 16 15 19 19 C 1.46463 * 110.99922 * 189.99724 * 14 13 11 20 20 H 1.08994 * 109.40888 * 282.35222 * 19 14 13 21 21 C 1.50701 * 109.34387 * 42.15707 * 19 14 13 22 22 C 1.38238 * 119.99891 * 40.08215 * 21 19 14 23 23 C 1.38233 * 119.99910 * 179.77269 * 22 21 19 24 24 C 1.38231 * 119.99977 * 0.47564 * 23 22 21 25 25 C 1.38237 * 120.00051 * 359.79804 * 24 23 22 26 26 C 1.38230 * 120.00062 * 220.35667 * 21 19 14 27 27 H 0.97004 * 120.00296 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47110 * 60.00066 * 9 7 2 29 29 H 1.09007 * 109.47071 * 299.99774 * 9 7 2 30 30 H 0.96997 * 119.99943 * 0.02562 * 10 9 7 31 31 H 1.08997 * 109.47327 * 60.00005 * 13 11 10 32 32 H 1.08990 * 109.47036 * 299.99770 * 13 11 10 33 33 H 1.09004 * 109.40672 * 317.88792 * 15 14 13 34 34 H 1.08995 * 109.40802 * 77.72530 * 15 14 13 35 35 H 1.09004 * 109.62842 * 57.70245 * 16 15 14 36 36 H 1.08997 * 109.63052 * 178.09263 * 16 15 14 37 37 H 1.08998 * 109.63767 * 188.98869 * 18 17 16 38 38 H 1.09005 * 109.62935 * 68.39334 * 18 17 16 39 39 H 1.07998 * 120.00086 * 359.97438 * 22 21 19 40 40 H 1.08001 * 120.00267 * 180.25813 * 23 22 21 41 41 H 1.08007 * 120.00319 * 179.77099 * 24 23 22 42 42 H 1.07998 * 120.00035 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.00379 * 0.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0018 11 6 1.7538 -4.8834 -0.0015 12 8 0.5614 -5.1050 0.0003 13 6 2.7331 -6.0288 -0.0022 14 7 1.9986 -7.3010 -0.0010 15 6 1.2161 -7.4564 -1.2294 16 6 0.1421 -8.5313 -1.0300 17 16 0.9674 -10.1143 -0.6813 18 6 2.0979 -9.6590 0.6690 19 6 2.9026 -8.4288 0.2357 20 1 3.4460 -8.6561 -0.6813 21 6 3.8825 -8.0638 1.3210 22 6 3.4568 -7.3482 2.4245 23 6 4.3546 -7.0175 3.4222 24 6 5.6801 -7.3937 3.3117 25 6 6.1070 -8.1043 2.2055 26 6 5.2081 -8.4395 1.2102 27 1 -0.4851 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8898 30 1 3.1566 -3.4354 -0.0021 31 1 3.3604 -5.9711 0.8874 32 1 3.3591 -5.9710 -0.8925 33 1 0.7382 -6.5085 -1.4768 34 1 1.8764 -7.7526 -2.0444 35 1 -0.4972 -8.2589 -0.1903 36 1 -0.4595 -8.6201 -1.9346 37 1 2.7766 -10.4871 0.8735 38 1 1.5227 -9.4235 1.5645 39 1 2.4221 -7.0504 2.5087 40 1 4.0212 -6.4620 4.2863 41 1 6.3824 -7.1321 4.0894 42 1 7.1427 -8.3979 2.1190 43 1 5.5418 -8.9944 0.3458 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734487401.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:31 Heat of formation + Delta-G solvation = -16.462605 kcal Electronic energy + Delta-G solvation = -24762.331309 eV Core-core repulsion = 21318.880104 eV Total energy + Delta-G solvation = -3443.451205 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.42644 -40.14271 -38.31864 -36.10178 -34.37051 -33.81428 -32.42874 -31.64240 -30.36164 -29.55490 -27.05387 -24.98176 -24.48485 -23.68573 -22.89891 -21.49665 -21.05397 -18.97563 -18.32997 -17.59630 -17.28584 -17.22448 -16.79942 -16.45290 -16.26318 -15.93791 -15.49788 -15.28260 -15.19093 -14.90718 -14.63703 -14.28359 -14.18656 -14.09989 -13.89980 -13.67892 -13.50999 -13.21548 -12.90411 -12.82974 -12.72463 -12.57815 -12.45009 -12.22988 -11.87635 -11.64643 -11.45803 -10.92985 -10.81659 -10.58810 -9.82628 -9.78362 -9.60249 -9.44300 -8.73423 -8.29802 -6.46123 0.36895 0.51627 0.78380 1.42785 1.43536 1.47992 1.56987 1.76287 2.17993 2.39862 2.81099 2.92787 3.05422 3.59982 3.76214 3.86744 3.94903 4.01790 4.09784 4.18159 4.21738 4.26503 4.30565 4.36092 4.43763 4.47364 4.64583 4.70648 4.77184 4.82204 4.93616 5.07862 5.10403 5.19549 5.24525 5.48156 5.55245 5.60340 5.66855 5.68111 5.79268 5.85258 6.02081 6.12808 6.65074 6.91974 7.23367 7.49513 8.82472 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012926 B = 0.003565 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.579170 B = 7852.727706 C = 9598.030224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.982 3.018 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.083 0.917 9 C 0.270 3.730 10 N -0.709 5.709 11 C 0.497 3.503 12 O -0.579 6.579 13 C 0.047 3.953 14 N -0.539 5.539 15 C 0.059 3.941 16 C -0.063 4.063 17 S -0.284 6.284 18 C -0.055 4.055 19 C 0.136 3.864 20 H 0.074 0.926 21 C -0.093 4.093 22 C -0.112 4.112 23 C -0.133 4.133 24 C -0.119 4.119 25 C -0.120 4.120 26 C -0.110 4.110 27 H 0.268 0.732 28 H -0.012 1.012 29 H -0.014 1.014 30 H 0.406 0.594 31 H 0.126 0.874 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.117 0.883 37 H 0.128 0.872 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.126 0.874 41 H 0.141 0.859 42 H 0.147 0.853 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.321 -19.796 2.302 24.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.806 3.194 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.593 4.593 8 H 0.101 0.899 9 C 0.147 3.853 10 N -0.360 5.360 11 C 0.284 3.716 12 O -0.459 6.459 13 C -0.083 4.083 14 N -0.265 5.265 15 C -0.070 4.070 16 C -0.211 4.211 17 S -0.056 6.056 18 C -0.203 4.203 19 C 0.027 3.973 20 H 0.092 0.908 21 C -0.095 4.095 22 C -0.130 4.130 23 C -0.151 4.151 24 C -0.137 4.137 25 C -0.138 4.138 26 C -0.128 4.128 27 H 0.077 0.923 28 H 0.006 0.994 29 H 0.004 0.996 30 H 0.241 0.759 31 H 0.144 0.856 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.135 0.865 37 H 0.146 0.854 38 H 0.101 0.899 39 H 0.127 0.873 40 H 0.144 0.856 41 H 0.159 0.841 42 H 0.165 0.835 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 12.794 -20.866 2.158 24.571 hybrid contribution 0.433 2.348 0.047 2.388 sum 13.227 -18.518 2.205 22.863 Atomic orbital electron populations 1.70135 1.08251 1.28465 1.50062 1.26033 0.95734 1.03814 0.93874 0.85144 0.79137 0.77461 0.77683 1.17637 1.20459 1.20487 1.21645 0.94265 0.90623 1.52740 0.89928 1.18499 0.88570 0.84195 0.93998 1.46186 1.11102 1.05539 1.73127 1.21171 0.89873 0.84619 0.75966 1.90619 1.18851 1.85104 1.51369 1.22059 0.94221 0.86856 1.05182 1.60684 1.26581 1.00950 1.38259 1.22256 0.95154 0.99728 0.89867 1.23398 0.99412 0.92629 1.05701 1.86773 1.51364 1.19162 1.48277 1.23550 0.98877 0.99936 0.97984 1.20709 0.90532 0.89365 0.96735 0.90775 1.19662 0.94312 0.99985 0.95548 1.21057 0.99867 0.98179 0.93917 1.21372 0.94225 1.00466 0.99020 1.21484 0.95646 0.97718 0.98808 1.21437 1.00651 0.98101 0.93594 1.21244 0.91708 0.99853 1.00039 0.92278 0.99442 0.99590 0.75888 0.85623 0.90130 0.90343 0.92597 0.90499 0.86450 0.85436 0.89892 0.87345 0.85589 0.84149 0.83482 0.84032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.92 13.28 21.45 0.28 -55.63 16 2 C 0.01 0.28 5.46 84.66 0.46 0.74 16 3 Si 0.98 42.04 29.54 68.60 2.03 44.06 16 4 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 5 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.55 -29.98 9.28 25.60 0.24 -29.74 16 8 H 0.08 4.04 7.60 -2.91 -0.02 4.02 16 9 C 0.27 14.72 5.43 85.63 0.46 15.18 16 10 N -0.71 -29.63 5.55 -466.77 -2.59 -32.22 16 11 C 0.50 19.50 7.37 87.66 0.65 20.14 16 12 O -0.58 -27.68 14.33 -3.05 -0.04 -27.73 16 13 C 0.05 1.30 4.76 85.56 0.41 1.70 16 14 N -0.54 -14.26 3.58 -881.17 -3.15 -17.41 16 15 C 0.06 1.61 4.95 86.47 0.43 2.04 16 16 C -0.06 -1.59 6.69 72.07 0.48 -1.11 16 17 S -0.28 -6.44 22.39 -56.49 -1.27 -7.70 16 18 C -0.05 -1.09 5.95 72.07 0.43 -0.66 16 19 C 0.14 2.74 2.10 44.34 0.09 2.83 16 20 H 0.07 1.37 7.77 -2.39 -0.02 1.35 16 21 C -0.09 -1.76 3.68 -19.87 -0.07 -1.83 16 22 C -0.11 -2.45 7.10 22.27 0.16 -2.29 16 23 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 24 C -0.12 -1.81 10.05 22.27 0.22 -1.59 16 25 C -0.12 -1.62 10.05 22.27 0.22 -1.40 16 26 C -0.11 -1.63 9.67 22.27 0.22 -1.41 16 27 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 28 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 29 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 30 H 0.41 14.14 8.32 -92.71 -0.77 13.37 16 31 H 0.13 3.21 4.63 -2.39 -0.01 3.20 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 2.68 5.61 -2.38 -0.01 2.67 16 34 H 0.06 1.34 7.91 -2.39 -0.02 1.32 16 35 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.11 2.90 7.59 -2.91 -0.02 2.88 16 40 H 0.13 2.25 8.06 -2.91 -0.02 2.22 16 41 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 42 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 43 H 0.14 1.50 8.03 -2.91 -0.02 1.47 16 Total: -1.00 -69.48 359.49 0.12 -69.36 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.24 Total: 26.99 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 4.62 Total: 0.29 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -5.46 Total: -105.27 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.04 Total: -27.73 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: -6.44 SS G_CDS: -1.27 Total: -7.70 kcal Total: -69.48 0.12 -69.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734487401.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.897 kcal (2) G-P(sol) polarization free energy of solvation -69.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds