Wall clock time and date at job start Tue Mar 31 2020 13:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00065 * 2 1 4 4 H 1.48503 * 109.47283 * 269.99958 * 3 2 1 5 5 H 1.48503 * 109.47123 * 30.00049 * 3 2 1 6 6 H 1.48500 * 109.47547 * 149.99755 * 3 2 1 7 7 C 1.37880 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46808 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47182 * 179.97438 * 10 9 7 12 12 N 1.46493 * 109.47084 * 179.97438 * 11 10 9 13 13 C 1.34784 * 119.99864 * 180.02562 * 12 11 10 14 14 S 1.71199 * 119.99971 * 359.72512 * 13 12 11 15 15 N 1.34777 * 119.99964 * 179.73002 * 13 12 11 16 16 C 1.46496 * 119.99614 * 180.02562 * 15 13 12 17 17 H 1.08997 * 109.43822 * 324.99464 * 16 15 13 18 18 C 1.53069 * 109.43379 * 205.07897 * 16 15 13 19 19 C 1.53417 * 108.29302 * 191.74436 * 18 16 15 20 20 O 1.42822 * 108.36774 * 64.74904 * 19 18 16 21 21 C 1.35844 * 117.86585 * 310.85026 * 20 19 18 22 22 C 1.39145 * 118.50390 * 197.02124 * 21 20 19 23 23 C 1.37971 * 120.21747 * 180.17735 * 22 21 20 24 24 C 1.38289 * 119.95624 * 0.02562 * 23 22 21 25 25 C 1.38101 * 119.98292 * 359.92202 * 24 23 22 26 26 C 1.38315 * 121.79054 * 17.11315 * 21 20 19 27 27 H 0.96993 * 120.00031 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47275 * 60.00022 * 9 7 2 29 29 H 1.09001 * 109.47061 * 299.99581 * 9 7 2 30 30 H 1.09007 * 109.47291 * 60.00087 * 10 9 7 31 31 H 1.08993 * 109.47243 * 299.99996 * 10 9 7 32 32 H 1.09007 * 109.46593 * 60.00081 * 11 10 9 33 33 H 1.09006 * 109.47216 * 300.00539 * 11 10 9 34 34 H 0.97000 * 120.00740 * 359.72857 * 12 11 10 35 35 H 0.96996 * 119.99887 * 359.97438 * 15 13 12 36 36 H 1.08997 * 109.70585 * 311.44680 * 18 16 15 37 37 H 1.09007 * 109.70187 * 72.00653 * 18 16 15 38 38 H 1.09004 * 109.68422 * 184.46902 * 19 18 16 39 39 H 1.08996 * 109.68198 * 304.99395 * 19 18 16 40 40 H 1.07996 * 119.88783 * 0.20447 * 22 21 20 41 41 H 1.08002 * 120.01738 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.00565 * 179.90190 * 24 23 22 43 43 H 1.08007 * 119.83830 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9872 0.0012 12 7 2.4323 -6.1006 0.0006 13 6 1.9830 -7.3714 0.0005 14 16 0.2999 -7.6842 0.0081 15 7 2.8589 -8.3958 -0.0056 16 6 2.3705 -9.7769 -0.0063 17 1 1.4585 -9.8394 0.5873 18 6 3.4360 -10.6942 0.5989 19 6 3.0341 -12.1483 0.3204 20 8 3.0664 -12.3618 -1.0914 21 6 2.4327 -11.4593 -1.8847 22 6 2.1400 -11.8186 -3.1967 23 6 1.5005 -10.9281 -4.0343 24 6 1.1491 -9.6738 -3.5699 25 6 1.4370 -9.3142 -2.2680 26 6 2.0780 -10.2050 -1.4221 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 2.8720 -3.6044 0.8906 31 1 2.8719 -3.6044 -0.8894 32 1 0.8534 -5.0451 -0.8887 33 1 0.8538 -5.0446 0.8914 34 1 3.3860 -5.9234 -0.0041 35 1 3.8125 -8.2185 -0.0103 36 1 4.4031 -10.4862 0.1410 37 1 3.4957 -10.5284 1.6746 38 1 3.7360 -12.8235 0.8101 39 1 2.0273 -12.3294 0.6967 40 1 2.4140 -12.7979 -3.5604 41 1 1.2753 -11.2102 -5.0522 42 1 0.6499 -8.9755 -4.2254 43 1 1.1611 -8.3342 -1.9076 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741492630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:16 Heat of formation + Delta-G solvation = -4.767049 kcal Electronic energy + Delta-G solvation = -23805.333705 eV Core-core repulsion = 20362.389657 eV Total energy + Delta-G solvation = -3442.944048 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.17902 -38.97671 -37.64367 -36.51374 -34.02587 -32.63241 -31.20072 -30.72002 -30.29198 -27.12312 -25.51699 -24.09081 -23.64432 -23.15738 -22.46727 -20.67426 -20.47628 -18.38640 -17.98449 -17.37467 -16.85965 -16.47415 -16.24172 -15.45847 -15.31104 -14.98617 -14.75222 -14.56695 -14.42811 -14.10946 -13.86259 -13.48937 -13.22486 -12.70850 -12.39218 -12.29736 -11.95435 -11.87821 -11.67694 -11.31932 -11.11484 -11.06992 -10.94839 -10.89075 -10.84224 -10.63836 -9.97978 -9.59389 -9.21006 -9.17123 -8.95039 -8.42466 -8.34905 -7.68127 -7.26240 -6.06750 -4.10646 1.12371 1.33019 1.40908 1.95802 2.52224 2.98501 3.27097 3.33847 3.35772 3.46012 3.69582 4.08027 4.24582 4.33832 4.39580 4.66409 4.73069 4.93866 5.05597 5.10980 5.23439 5.29021 5.29968 5.34679 5.38489 5.50966 5.59849 5.61675 5.76832 5.93702 6.01765 6.18123 6.26794 6.38891 6.42386 6.51886 6.60954 6.65626 6.77178 6.87620 7.21492 7.25614 7.56666 7.67716 7.90853 8.30556 8.95614 9.53884 11.04357 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024237 B = 0.002363 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.965651 B =11847.101459 C =12282.343789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.526 4.526 8 H 0.054 0.946 9 C 0.026 3.974 10 C -0.123 4.123 11 C 0.118 3.882 12 N -0.670 5.670 13 C 0.555 3.445 14 S -0.636 6.636 15 N -0.686 5.686 16 C 0.195 3.805 17 H 0.128 0.872 18 C -0.168 4.168 19 C 0.069 3.931 20 O -0.318 6.318 21 C 0.136 3.864 22 C -0.161 4.161 23 C -0.082 4.082 24 C -0.157 4.157 25 C -0.063 4.063 26 C -0.177 4.177 27 H 0.262 0.738 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.396 0.604 35 H 0.397 0.603 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.407 -25.646 -1.790 27.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.161 4.161 11 C -0.004 4.004 12 N -0.296 5.296 13 C 0.194 3.806 14 S -0.509 6.509 15 N -0.317 5.317 16 C 0.090 3.910 17 H 0.145 0.855 18 C -0.206 4.206 19 C -0.007 4.007 20 O -0.232 6.232 21 C 0.091 3.909 22 C -0.180 4.180 23 C -0.100 4.100 24 C -0.176 4.176 25 C -0.083 4.083 26 C -0.180 4.180 27 H 0.072 0.928 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.232 0.768 35 H 0.233 0.767 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.131 0.869 39 H 0.089 0.911 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.104 -25.825 -1.780 27.125 hybrid contribution 2.113 1.481 0.098 2.582 sum 10.217 -24.345 -1.683 26.455 Atomic orbital electron populations 1.69961 1.06028 1.26811 1.50162 1.25022 0.94862 0.99302 0.95182 0.86584 0.79766 0.83446 0.78129 1.20622 1.21128 1.19952 1.21156 0.92905 0.90893 1.51428 0.92739 1.19005 0.93685 0.90428 0.98004 1.21969 1.00011 0.93213 1.00890 1.22194 0.91057 0.82640 1.04542 1.45526 1.11348 1.03925 1.68798 1.22379 0.95582 0.82190 0.80451 1.93550 0.92604 1.91073 1.73713 1.44969 1.08190 1.05069 1.73459 1.19989 0.99148 0.77813 0.94071 0.85504 1.22533 0.99300 0.95804 1.03009 1.22903 1.02966 0.95509 0.79315 1.85980 1.71153 1.48152 1.17957 1.18655 0.93488 0.87806 0.90964 1.20490 1.04335 1.01072 0.92074 1.20985 0.96488 0.93376 0.99139 1.21137 1.03042 0.97057 0.96329 1.21988 0.92447 1.01375 0.92456 1.19944 1.06723 0.94495 0.96813 0.92815 0.95998 0.95984 0.92720 0.92706 0.89581 0.89506 0.76756 0.76663 0.89950 0.88794 0.86893 0.91055 0.85486 0.85632 0.85909 0.83223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.53 -14.27 9.11 -34.44 -0.31 -14.58 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.03 0.64 4.97 -27.88 -0.14 0.51 16 10 C -0.12 -2.21 5.27 -26.73 -0.14 -2.35 16 11 C 0.12 1.86 5.13 -4.04 -0.02 1.84 16 12 N -0.67 -8.14 5.56 -62.03 -0.34 -8.48 16 13 C 0.56 7.04 6.72 -86.91 -0.58 6.46 16 14 S -0.64 -10.83 24.43 -107.50 -2.63 -13.46 16 15 N -0.69 -6.34 4.87 -56.58 -0.28 -6.62 16 16 C 0.19 1.85 2.54 -69.01 -0.18 1.68 16 17 H 0.13 1.46 6.81 -51.93 -0.35 1.11 16 18 C -0.17 -1.03 5.67 -26.48 -0.15 -1.18 16 19 C 0.07 0.43 7.03 37.37 0.26 0.70 16 20 O -0.32 -3.06 10.27 -19.25 -0.20 -3.26 16 21 C 0.14 1.50 6.47 -39.22 -0.25 1.24 16 22 C -0.16 -1.67 9.94 -39.34 -0.39 -2.06 16 23 C -0.08 -0.83 10.04 -39.66 -0.40 -1.23 16 24 C -0.16 -1.85 10.04 -39.61 -0.40 -2.25 16 25 C -0.06 -0.82 8.61 -39.51 -0.34 -1.16 16 26 C -0.18 -2.03 5.56 -104.44 -0.58 -2.61 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.09 1.49 8.00 -51.93 -0.42 1.07 16 33 H 0.09 1.50 7.99 -51.93 -0.41 1.09 16 34 H 0.40 3.67 8.49 -40.82 -0.35 3.32 16 35 H 0.40 2.55 8.59 -40.82 -0.35 2.19 16 36 H 0.08 0.47 8.11 -51.93 -0.42 0.05 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.15 2.21 3.91 -36.90 -0.14 2.07 16 LS Contribution 360.94 15.07 5.44 5.44 Total: -1.00 -33.15 360.94 -12.22 -45.37 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.22 Total: 3.96 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -3.72 Total: -13.47 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.12 Total: -40.68 kcal Atomic # 8 Polarization: -3.06 SS G_CDS: -0.20 Total: -3.26 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -10.83 SS G_CDS: -2.63 Total: -13.46 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.15 -12.22 -45.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741492630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.603 kcal (2) G-P(sol) polarization free energy of solvation -33.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds