Wall clock time and date at job start Tue Mar 31 2020 13:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00065 * 2 1 4 4 H 1.48503 * 109.47283 * 269.99958 * 3 2 1 5 5 H 1.48503 * 109.47123 * 30.00049 * 3 2 1 6 6 H 1.48500 * 109.47547 * 149.99755 * 3 2 1 7 7 C 1.37880 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46808 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47182 * 179.97438 * 10 9 7 12 12 N 1.46493 * 109.47084 * 179.97438 * 11 10 9 13 13 C 1.34784 * 119.99864 * 180.02562 * 12 11 10 14 14 S 1.71199 * 119.99971 * 359.72512 * 13 12 11 15 15 N 1.34777 * 119.99964 * 179.73002 * 13 12 11 16 16 C 1.46496 * 119.99614 * 180.02562 * 15 13 12 17 17 H 1.08997 * 109.43822 * 324.99464 * 16 15 13 18 18 C 1.53069 * 109.43379 * 205.07897 * 16 15 13 19 19 C 1.53417 * 108.29302 * 191.74436 * 18 16 15 20 20 O 1.42822 * 108.36774 * 64.74904 * 19 18 16 21 21 C 1.35844 * 117.86585 * 310.85026 * 20 19 18 22 22 C 1.39145 * 118.50390 * 197.02124 * 21 20 19 23 23 C 1.37971 * 120.21747 * 180.17735 * 22 21 20 24 24 C 1.38289 * 119.95624 * 0.02562 * 23 22 21 25 25 C 1.38101 * 119.98292 * 359.92202 * 24 23 22 26 26 C 1.38315 * 121.79054 * 17.11315 * 21 20 19 27 27 H 0.96993 * 120.00031 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47275 * 60.00022 * 9 7 2 29 29 H 1.09001 * 109.47061 * 299.99581 * 9 7 2 30 30 H 1.09007 * 109.47291 * 60.00087 * 10 9 7 31 31 H 1.08993 * 109.47243 * 299.99996 * 10 9 7 32 32 H 1.09007 * 109.46593 * 60.00081 * 11 10 9 33 33 H 1.09006 * 109.47216 * 300.00539 * 11 10 9 34 34 H 0.97000 * 120.00740 * 359.72857 * 12 11 10 35 35 H 0.96996 * 119.99887 * 359.97438 * 15 13 12 36 36 H 1.08997 * 109.70585 * 311.44680 * 18 16 15 37 37 H 1.09007 * 109.70187 * 72.00653 * 18 16 15 38 38 H 1.09004 * 109.68422 * 184.46902 * 19 18 16 39 39 H 1.08996 * 109.68198 * 304.99395 * 19 18 16 40 40 H 1.07996 * 119.88783 * 0.20447 * 22 21 20 41 41 H 1.08002 * 120.01738 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.00565 * 179.90190 * 24 23 22 43 43 H 1.08007 * 119.83830 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9872 0.0012 12 7 2.4323 -6.1006 0.0006 13 6 1.9830 -7.3714 0.0005 14 16 0.2999 -7.6842 0.0081 15 7 2.8589 -8.3958 -0.0056 16 6 2.3705 -9.7769 -0.0063 17 1 1.4585 -9.8394 0.5873 18 6 3.4360 -10.6942 0.5989 19 6 3.0341 -12.1483 0.3204 20 8 3.0664 -12.3618 -1.0914 21 6 2.4327 -11.4593 -1.8847 22 6 2.1400 -11.8186 -3.1967 23 6 1.5005 -10.9281 -4.0343 24 6 1.1491 -9.6738 -3.5699 25 6 1.4370 -9.3142 -2.2680 26 6 2.0780 -10.2050 -1.4221 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 2.8720 -3.6044 0.8906 31 1 2.8719 -3.6044 -0.8894 32 1 0.8534 -5.0451 -0.8887 33 1 0.8538 -5.0446 0.8914 34 1 3.3860 -5.9234 -0.0041 35 1 3.8125 -8.2185 -0.0103 36 1 4.4031 -10.4862 0.1410 37 1 3.4957 -10.5284 1.6746 38 1 3.7360 -12.8235 0.8101 39 1 2.0273 -12.3294 0.6967 40 1 2.4140 -12.7979 -3.5604 41 1 1.2753 -11.2102 -5.0522 42 1 0.6499 -8.9755 -4.2254 43 1 1.1611 -8.3342 -1.9076 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741492630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:15 Heat of formation + Delta-G solvation = -25.319726 kcal Electronic energy + Delta-G solvation = -23806.224936 eV Core-core repulsion = 20362.389657 eV Total energy + Delta-G solvation = -3443.835279 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.94604 -40.00718 -38.40786 -37.60521 -35.69474 -33.98724 -32.54472 -31.52448 -31.13856 -28.75324 -26.51406 -24.95544 -24.92785 -24.41885 -23.36394 -22.28376 -21.23550 -19.40939 -18.84724 -18.65167 -18.06518 -17.60969 -17.20036 -16.61473 -16.52994 -16.33617 -15.87019 -15.75958 -15.39152 -15.09567 -14.66499 -14.33917 -14.23821 -14.18546 -13.80116 -13.54690 -13.11721 -12.96044 -12.73555 -12.61707 -12.49548 -12.42118 -12.25771 -12.13990 -11.79403 -11.69476 -11.57153 -11.50264 -11.22153 -10.55703 -10.21575 -9.81498 -9.17081 -8.95086 -8.57608 -8.19679 -6.31265 0.23836 0.34161 0.49421 0.83026 1.40971 1.42449 1.44769 1.53318 2.32030 2.40833 2.52651 2.85850 3.14424 3.44462 3.55818 3.74807 3.97769 4.03007 4.13503 4.16911 4.23190 4.38771 4.47638 4.52105 4.55584 4.61325 4.65632 4.69634 4.86056 4.89697 4.91673 5.06656 5.12707 5.13595 5.33996 5.41449 5.50921 5.52514 5.66633 5.69200 5.83614 5.84749 5.86074 6.20995 6.34108 6.47511 6.86580 7.38470 8.92316 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024237 B = 0.002363 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.965651 B =11847.101459 C =12282.343789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.026 3.974 10 C -0.103 4.103 11 C 0.138 3.862 12 N -0.656 5.656 13 C 0.580 3.420 14 S -0.721 6.721 15 N -0.658 5.658 16 C 0.193 3.807 17 H 0.106 0.894 18 C -0.157 4.157 19 C 0.061 3.939 20 O -0.325 6.325 21 C 0.133 3.867 22 C -0.167 4.167 23 C -0.079 4.079 24 C -0.175 4.175 25 C -0.086 4.086 26 C -0.186 4.186 27 H 0.263 0.737 28 H -0.007 1.007 29 H -0.006 1.006 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.417 0.583 35 H 0.418 0.582 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.147 0.853 39 H 0.070 0.930 40 H 0.146 0.854 41 H 0.152 0.848 42 H 0.123 0.877 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.900 -26.934 -1.545 29.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.012 4.012 10 C -0.141 4.141 11 C 0.015 3.985 12 N -0.284 5.284 13 C 0.215 3.785 14 S -0.596 6.596 15 N -0.289 5.289 16 C 0.088 3.912 17 H 0.124 0.876 18 C -0.195 4.195 19 C -0.014 4.014 20 O -0.239 6.239 21 C 0.087 3.913 22 C -0.186 4.186 23 C -0.097 4.097 24 C -0.194 4.194 25 C -0.106 4.106 26 C -0.188 4.188 27 H 0.072 0.928 28 H 0.012 0.988 29 H 0.013 0.987 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.257 0.743 35 H 0.258 0.742 36 H 0.113 0.887 37 H 0.135 0.865 38 H 0.164 0.836 39 H 0.088 0.912 40 H 0.164 0.836 41 H 0.169 0.831 42 H 0.141 0.859 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 11.677 -27.154 -1.530 29.598 hybrid contribution 1.056 1.771 0.012 2.062 sum 12.734 -25.383 -1.518 28.439 Atomic orbital electron populations 1.70111 1.07922 1.27796 1.51578 1.26005 0.95707 1.03503 0.94849 0.85447 0.78712 0.78465 0.78413 1.19902 1.21145 1.18392 1.21659 0.93705 0.91976 1.50517 0.91522 1.18898 0.94351 0.92639 0.95322 1.21640 0.98565 0.91582 1.02292 1.21641 0.90907 0.82971 1.03021 1.45018 1.11801 1.02840 1.68759 1.21733 0.94169 0.82805 0.79765 1.93758 0.96966 1.91757 1.77098 1.44872 1.08751 1.04405 1.70846 1.20081 0.99895 0.78032 0.93186 0.87632 1.22534 0.98233 0.94566 1.04185 1.23241 1.04075 0.96311 0.77762 1.85981 1.70668 1.47770 1.19477 1.18787 0.93208 0.87746 0.91538 1.20828 1.03865 1.01863 0.92028 1.21253 0.95616 0.92457 1.00353 1.21285 1.03715 0.98147 0.96203 1.21913 0.94006 1.01165 0.93507 1.20040 1.06730 0.94703 0.97308 0.92816 0.98835 0.98741 0.91123 0.91252 0.91380 0.91165 0.74324 0.74226 0.88671 0.86506 0.83562 0.91157 0.83610 0.83070 0.85870 0.85302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 3 Si 0.97 43.16 29.54 68.60 2.03 45.18 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 7 C -0.54 -29.36 9.11 25.60 0.23 -29.13 16 8 H 0.07 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.29 4.97 29.85 0.15 1.44 16 10 C -0.10 -3.63 5.27 30.60 0.16 -3.47 16 11 C 0.14 4.43 5.13 86.38 0.44 4.87 16 12 N -0.66 -15.14 5.56 -350.16 -1.95 -17.09 16 13 C 0.58 14.44 6.72 179.05 1.20 15.65 16 14 S -0.72 -25.81 24.43 -56.49 -1.38 -27.19 16 15 N -0.66 -11.02 4.87 -332.93 -1.62 -12.64 16 16 C 0.19 3.43 2.54 44.29 0.11 3.54 16 17 H 0.11 2.43 6.81 -2.39 -0.02 2.41 16 18 C -0.16 -1.43 5.67 30.76 0.17 -1.26 16 19 C 0.06 0.59 7.03 72.12 0.51 1.10 16 20 O -0.32 -5.46 10.27 -91.79 -0.94 -6.40 16 21 C 0.13 2.73 6.47 22.51 0.15 2.87 16 22 C -0.17 -3.21 9.94 22.42 0.22 -2.99 16 23 C -0.08 -1.52 10.04 22.22 0.22 -1.30 16 24 C -0.18 -4.20 10.04 22.25 0.22 -3.97 16 25 C -0.09 -2.30 8.61 22.31 0.19 -2.11 16 26 C -0.19 -4.13 5.56 -19.75 -0.11 -4.24 16 27 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 28 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 29 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 30 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.07 2.46 8.00 -2.38 -0.02 2.44 16 33 H 0.07 2.52 7.99 -2.38 -0.02 2.50 16 34 H 0.42 6.52 8.49 -92.71 -0.79 5.73 16 35 H 0.42 3.98 8.59 -92.71 -0.80 3.19 16 36 H 0.09 0.69 8.11 -2.39 -0.02 0.67 16 37 H 0.12 0.60 8.14 -2.38 -0.02 0.58 16 38 H 0.15 0.48 8.14 -2.38 -0.02 0.46 16 39 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 41 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 42 H 0.12 2.78 8.06 -2.91 -0.02 2.76 16 43 H 0.13 4.00 3.91 -12.82 -0.05 3.95 16 Total: -1.00 -75.68 360.94 0.18 -75.50 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -0.59 Total: 17.63 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: 4.34 Total: -18.70 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -3.28 Total: -86.03 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.94 Total: -6.40 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: -25.81 SS G_CDS: -1.38 Total: -27.19 kcal Total: -75.68 0.18 -75.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741492630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.184 kcal (2) G-P(sol) polarization free energy of solvation -75.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds