Wall clock time and date at job start Tue Mar 31 2020 13:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 119.99484 * 2 1 4 4 H 1.48500 * 109.46989 * 269.99604 * 3 2 1 5 5 H 1.48493 * 109.47386 * 29.99904 * 3 2 1 6 6 H 1.48504 * 109.46922 * 150.00232 * 3 2 1 7 7 C 1.37871 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00304 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99741 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47351 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47551 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47441 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99999 * 179.97438 * 12 11 10 14 14 S 1.71192 * 119.99975 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99731 * 180.02562 * 13 12 11 16 16 C 1.46502 * 119.99933 * 179.97438 * 15 13 12 17 17 H 1.08998 * 109.43441 * 34.91718 * 16 15 13 18 18 C 1.53073 * 109.40210 * 154.80615 * 16 15 13 19 19 C 1.53405 * 108.29902 * 168.23913 * 18 16 15 20 20 O 1.42831 * 108.38027 * 295.28511 * 19 18 16 21 21 C 1.35844 * 117.85643 * 49.17711 * 20 19 18 22 22 C 1.39154 * 118.50047 * 162.93448 * 21 20 19 23 23 C 1.37965 * 120.21597 * 179.46023 * 22 21 20 24 24 C 1.38292 * 119.95897 * 0.53717 * 23 22 21 25 25 C 1.38105 * 119.98272 * 359.56747 * 24 23 22 26 26 C 1.38373 * 121.80992 * 342.79911 * 21 20 19 27 27 H 0.96993 * 120.00349 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47348 * 59.99516 * 9 7 2 29 29 H 1.09007 * 109.47073 * 299.99642 * 9 7 2 30 30 H 1.09011 * 109.47197 * 59.99714 * 10 9 7 31 31 H 1.09000 * 109.47472 * 300.00044 * 10 9 7 32 32 H 1.08997 * 109.47072 * 59.99946 * 11 10 9 33 33 H 1.09004 * 109.46779 * 299.99834 * 11 10 9 34 34 H 0.96996 * 119.99746 * 0.02562 * 12 11 10 35 35 H 0.97000 * 120.00431 * 0.02562 * 15 13 12 36 36 H 1.08997 * 109.69797 * 287.94728 * 18 16 15 37 37 H 1.09002 * 109.69604 * 48.50044 * 18 16 15 38 38 H 1.08999 * 109.68491 * 55.00600 * 19 18 16 39 39 H 1.09003 * 109.68153 * 175.56546 * 19 18 16 40 40 H 1.08000 * 119.88769 * 359.69487 * 22 21 20 41 41 H 1.07995 * 120.02241 * 180.28516 * 23 22 21 42 42 H 1.08002 * 120.01156 * 179.85422 * 24 23 22 43 43 H 1.07998 * 119.84038 * 180.17395 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0001 11 6 5.5517 -2.6364 -0.0001 12 7 6.0401 -4.0175 0.0004 13 6 7.3652 -4.2637 -0.0001 14 16 8.4775 -2.9625 -0.0006 15 7 7.8145 -5.5344 -0.0002 16 6 9.2548 -5.8021 -0.0013 17 1 9.7658 -5.0396 0.5865 18 6 9.5166 -7.1793 0.6135 19 6 10.9760 -7.5613 0.3355 20 8 11.1429 -7.7057 -1.0757 21 6 10.6785 -6.7103 -1.8749 22 6 11.1352 -6.6451 -3.1877 23 6 10.6784 -5.6554 -4.0335 24 6 9.7720 -4.7178 -3.5732 25 6 9.3182 -4.7780 -2.2703 26 6 9.7696 -5.7722 -1.4181 27 1 -0.4850 0.8400 -0.0004 28 1 3.8746 -0.6806 0.8904 29 1 3.8753 -0.6795 -0.8895 30 1 3.6587 -3.1501 -0.8904 31 1 3.6581 -3.1505 0.8896 32 1 5.9150 -2.1226 0.8899 33 1 5.9149 -2.1224 -0.8901 34 1 5.4098 -4.7548 0.0003 35 1 7.1842 -6.2717 -0.0002 36 1 9.3454 -7.1400 1.6892 37 1 8.8512 -7.9154 0.1623 38 1 11.6375 -6.7777 0.7051 39 1 11.2096 -8.5037 0.8311 40 1 11.8467 -7.3740 -3.5468 41 1 11.0314 -5.6106 -5.0531 42 1 9.4157 -3.9412 -4.2339 43 1 8.6083 -4.0463 -1.9141 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741492632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:19 Heat of formation + Delta-G solvation = -1.514173 kcal Electronic energy + Delta-G solvation = -23863.185719 eV Core-core repulsion = 20420.382727 eV Total energy + Delta-G solvation = -3442.802993 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.21661 -39.04505 -37.68224 -36.60041 -34.10687 -32.63652 -31.39934 -30.78826 -30.34884 -27.53536 -25.61288 -24.13402 -23.66750 -23.07341 -22.48264 -20.63550 -20.43782 -18.46869 -18.02928 -17.46724 -16.89721 -16.70548 -16.42769 -15.51958 -15.40967 -15.03261 -14.91282 -14.61590 -14.19552 -14.07221 -13.90812 -13.52681 -13.31567 -12.81446 -12.74513 -12.32812 -12.08327 -12.00839 -11.73650 -11.41921 -11.24790 -11.17657 -11.13182 -10.96642 -10.84272 -10.16893 -9.98421 -9.79050 -9.30562 -9.25064 -8.99455 -8.60337 -8.38539 -7.75923 -7.34614 -6.11346 -4.11107 1.08233 1.28072 1.35024 1.88557 2.45272 2.95187 3.29464 3.37155 3.39055 3.41741 3.65493 4.04186 4.20884 4.30275 4.40705 4.62902 4.69239 4.90381 5.02599 5.06688 5.19540 5.22363 5.22686 5.26614 5.34779 5.44397 5.49235 5.55646 5.69152 5.87837 5.89594 6.13926 6.16630 6.27467 6.33189 6.45590 6.50331 6.61652 6.62884 6.72999 7.13481 7.16980 7.18651 7.26781 7.69211 8.43284 8.91166 9.50478 11.01680 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.023380 B = 0.002511 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.310760 B =11149.349116 C =11613.390194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.525 4.525 8 H 0.071 0.929 9 C -0.008 4.008 10 C -0.115 4.115 11 C 0.115 3.885 12 N -0.670 5.670 13 C 0.557 3.443 14 S -0.638 6.638 15 N -0.685 5.685 16 C 0.195 3.805 17 H 0.128 0.872 18 C -0.168 4.168 19 C 0.069 3.931 20 O -0.318 6.318 21 C 0.136 3.864 22 C -0.160 4.160 23 C -0.082 4.082 24 C -0.157 4.157 25 C -0.064 4.064 26 C -0.177 4.177 27 H 0.264 0.736 28 H 0.021 0.979 29 H 0.017 0.983 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.398 0.602 35 H 0.398 0.602 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.113 0.887 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.173 -18.678 -1.731 29.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.563 4.563 8 H 0.089 0.911 9 C -0.046 4.046 10 C -0.153 4.153 11 C -0.007 4.007 12 N -0.296 5.296 13 C 0.195 3.805 14 S -0.511 6.511 15 N -0.316 5.316 16 C 0.090 3.910 17 H 0.145 0.855 18 C -0.207 4.207 19 C -0.007 4.007 20 O -0.232 6.232 21 C 0.091 3.909 22 C -0.179 4.179 23 C -0.100 4.100 24 C -0.176 4.176 25 C -0.083 4.083 26 C -0.180 4.180 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.234 0.766 35 H 0.234 0.766 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.131 0.869 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 22.846 -17.723 -1.730 28.966 hybrid contribution -1.005 -0.302 0.094 1.054 sum 21.840 -18.026 -1.636 28.365 Atomic orbital electron populations 1.69908 1.06356 1.27080 1.50730 1.25022 0.94755 0.99304 0.94311 0.86779 0.80469 0.83408 0.78719 1.20147 1.21340 1.18697 1.21048 0.89191 0.94508 1.51539 0.91105 1.19475 0.97292 0.90865 0.97009 1.21778 0.90072 1.01720 1.01766 1.22188 0.95964 0.78031 1.04488 1.45448 1.03132 1.12100 1.68961 1.22355 0.88148 0.89588 0.80389 1.93537 1.49616 1.34151 1.73830 1.44979 1.08768 1.04561 1.73245 1.20004 0.78840 0.98161 0.94029 0.85497 1.22533 0.98752 0.96394 1.02982 1.22908 0.94893 1.03570 0.79327 1.85988 1.77448 1.41937 1.17829 1.18676 0.93513 0.87802 0.90908 1.20501 1.03804 1.01652 0.91962 1.20986 0.96099 0.93770 0.99123 1.21131 0.99900 1.00210 0.96316 1.21944 0.98460 0.95429 0.92457 1.19936 1.02174 0.99103 0.96751 0.92618 0.96038 0.96455 0.92090 0.92076 0.89551 0.89576 0.76574 0.76569 0.88770 0.89902 0.91058 0.86855 0.85451 0.85614 0.85929 0.83301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.52 -14.37 9.66 -34.44 -0.33 -14.70 16 8 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 9 C -0.01 -0.19 4.04 -27.88 -0.11 -0.30 16 10 C -0.12 -1.97 5.27 -26.73 -0.14 -2.11 16 11 C 0.12 1.70 5.13 -4.04 -0.02 1.68 16 12 N -0.67 -7.66 5.56 -62.03 -0.34 -8.00 16 13 C 0.56 6.71 6.73 -86.92 -0.58 6.12 16 14 S -0.64 -10.38 24.44 -107.50 -2.63 -13.01 16 15 N -0.68 -6.01 4.86 -56.58 -0.28 -6.29 16 16 C 0.19 1.77 2.54 -69.01 -0.18 1.60 16 17 H 0.13 1.40 6.81 -51.93 -0.35 1.05 16 18 C -0.17 -0.98 5.67 -26.48 -0.15 -1.13 16 19 C 0.07 0.42 7.03 37.37 0.26 0.68 16 20 O -0.32 -2.97 10.27 -19.25 -0.20 -3.17 16 21 C 0.14 1.45 6.47 -39.19 -0.25 1.20 16 22 C -0.16 -1.62 9.94 -39.34 -0.39 -2.01 16 23 C -0.08 -0.80 10.04 -39.66 -0.40 -1.20 16 24 C -0.16 -1.79 10.04 -39.61 -0.40 -2.19 16 25 C -0.06 -0.80 8.62 -39.53 -0.34 -1.14 16 26 C -0.18 -1.96 5.56 -104.44 -0.58 -2.54 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 29 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 30 H 0.06 1.02 8.14 -51.92 -0.42 0.59 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.09 1.37 7.99 -51.93 -0.42 0.96 16 33 H 0.09 1.36 7.99 -51.93 -0.41 0.95 16 34 H 0.40 3.46 8.49 -40.82 -0.35 3.11 16 35 H 0.40 2.39 8.59 -40.82 -0.35 2.04 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.45 8.11 -51.93 -0.42 0.03 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.15 2.12 3.92 -37.25 -0.15 1.97 16 LS Contribution 357.37 15.07 5.39 5.39 Total: -1.00 -33.68 357.37 -11.85 -45.53 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.18 Total: 3.59 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -3.71 Total: -14.20 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.15 Total: -40.83 kcal Atomic # 8 Polarization: -2.97 SS G_CDS: -0.20 Total: -3.17 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Atomic # 16 Polarization: -10.38 SS G_CDS: -2.63 Total: -13.01 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.68 -11.85 -45.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741492632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.015 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds