Wall clock time and date at job start Tue Mar 31 2020 13:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 119.99484 * 2 1 4 4 H 1.48500 * 109.46989 * 269.99604 * 3 2 1 5 5 H 1.48493 * 109.47386 * 29.99904 * 3 2 1 6 6 H 1.48504 * 109.46922 * 150.00232 * 3 2 1 7 7 C 1.37871 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00304 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99741 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47351 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47551 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47441 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99999 * 179.97438 * 12 11 10 14 14 S 1.71192 * 119.99975 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99731 * 180.02562 * 13 12 11 16 16 C 1.46502 * 119.99933 * 179.97438 * 15 13 12 17 17 H 1.08998 * 109.43441 * 34.91718 * 16 15 13 18 18 C 1.53073 * 109.40210 * 154.80615 * 16 15 13 19 19 C 1.53405 * 108.29902 * 168.23913 * 18 16 15 20 20 O 1.42831 * 108.38027 * 295.28511 * 19 18 16 21 21 C 1.35844 * 117.85643 * 49.17711 * 20 19 18 22 22 C 1.39154 * 118.50047 * 162.93448 * 21 20 19 23 23 C 1.37965 * 120.21597 * 179.46023 * 22 21 20 24 24 C 1.38292 * 119.95897 * 0.53717 * 23 22 21 25 25 C 1.38105 * 119.98272 * 359.56747 * 24 23 22 26 26 C 1.38373 * 121.80992 * 342.79911 * 21 20 19 27 27 H 0.96993 * 120.00349 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47348 * 59.99516 * 9 7 2 29 29 H 1.09007 * 109.47073 * 299.99642 * 9 7 2 30 30 H 1.09011 * 109.47197 * 59.99714 * 10 9 7 31 31 H 1.09000 * 109.47472 * 300.00044 * 10 9 7 32 32 H 1.08997 * 109.47072 * 59.99946 * 11 10 9 33 33 H 1.09004 * 109.46779 * 299.99834 * 11 10 9 34 34 H 0.96996 * 119.99746 * 0.02562 * 12 11 10 35 35 H 0.97000 * 120.00431 * 0.02562 * 15 13 12 36 36 H 1.08997 * 109.69797 * 287.94728 * 18 16 15 37 37 H 1.09002 * 109.69604 * 48.50044 * 18 16 15 38 38 H 1.08999 * 109.68491 * 55.00600 * 19 18 16 39 39 H 1.09003 * 109.68153 * 175.56546 * 19 18 16 40 40 H 1.08000 * 119.88769 * 359.69487 * 22 21 20 41 41 H 1.07995 * 120.02241 * 180.28516 * 23 22 21 42 42 H 1.08002 * 120.01156 * 179.85422 * 24 23 22 43 43 H 1.07998 * 119.84038 * 180.17395 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0001 11 6 5.5517 -2.6364 -0.0001 12 7 6.0401 -4.0175 0.0004 13 6 7.3652 -4.2637 -0.0001 14 16 8.4775 -2.9625 -0.0006 15 7 7.8145 -5.5344 -0.0002 16 6 9.2548 -5.8021 -0.0013 17 1 9.7658 -5.0396 0.5865 18 6 9.5166 -7.1793 0.6135 19 6 10.9760 -7.5613 0.3355 20 8 11.1429 -7.7057 -1.0757 21 6 10.6785 -6.7103 -1.8749 22 6 11.1352 -6.6451 -3.1877 23 6 10.6784 -5.6554 -4.0335 24 6 9.7720 -4.7178 -3.5732 25 6 9.3182 -4.7780 -2.2703 26 6 9.7696 -5.7722 -1.4181 27 1 -0.4850 0.8400 -0.0004 28 1 3.8746 -0.6806 0.8904 29 1 3.8753 -0.6795 -0.8895 30 1 3.6587 -3.1501 -0.8904 31 1 3.6581 -3.1505 0.8896 32 1 5.9150 -2.1226 0.8899 33 1 5.9149 -2.1224 -0.8901 34 1 5.4098 -4.7548 0.0003 35 1 7.1842 -6.2717 -0.0002 36 1 9.3454 -7.1400 1.6892 37 1 8.8512 -7.9154 0.1623 38 1 11.6375 -6.7777 0.7051 39 1 11.2096 -8.5037 0.8311 40 1 11.8467 -7.3740 -3.5468 41 1 11.0314 -5.6106 -5.0531 42 1 9.4157 -3.9412 -4.2339 43 1 8.6083 -4.0463 -1.9141 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741492632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:18 Heat of formation + Delta-G solvation = -22.977606 kcal Electronic energy + Delta-G solvation = -23864.116443 eV Core-core repulsion = 20420.382727 eV Total energy + Delta-G solvation = -3443.733717 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.94365 -40.00365 -38.40977 -37.62208 -35.67906 -34.06508 -32.72300 -31.53194 -31.14941 -29.09835 -26.50605 -24.92983 -24.73258 -24.37455 -23.35079 -22.14728 -21.23173 -19.47401 -18.96358 -18.79725 -18.17747 -17.60851 -17.20340 -16.64294 -16.41795 -16.33199 -15.80407 -15.70892 -15.40118 -15.11045 -14.78714 -14.67638 -14.28918 -14.18458 -13.85924 -13.57828 -13.19358 -12.96414 -12.82220 -12.68914 -12.49165 -12.26188 -12.13906 -11.87929 -11.79110 -11.76521 -11.64148 -11.52746 -11.34737 -10.76378 -10.20884 -9.81609 -9.16965 -8.94050 -8.57164 -8.29949 -6.33846 0.24400 0.34477 0.49504 0.83328 1.37819 1.39899 1.45387 1.51287 2.32297 2.36353 2.51679 2.85764 3.06464 3.44345 3.55730 3.74534 3.94118 4.00729 4.13074 4.15761 4.23147 4.38383 4.41963 4.51847 4.55400 4.61274 4.65320 4.70268 4.83280 4.84749 4.91333 5.00902 5.03541 5.11921 5.33903 5.36140 5.48442 5.52080 5.53322 5.64914 5.66362 5.84542 5.85032 6.25765 6.33155 6.47402 6.74466 7.31407 8.86294 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.023380 B = 0.002511 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.310760 B =11149.349116 C =11613.390194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.246 1.246 7 C -0.529 4.529 8 H 0.038 0.962 9 C -0.011 4.011 10 C -0.101 4.101 11 C 0.135 3.865 12 N -0.659 5.659 13 C 0.580 3.420 14 S -0.717 6.717 15 N -0.660 5.660 16 C 0.194 3.806 17 H 0.108 0.892 18 C -0.158 4.158 19 C 0.061 3.939 20 O -0.325 6.325 21 C 0.132 3.868 22 C -0.168 4.168 23 C -0.080 4.080 24 C -0.174 4.174 25 C -0.085 4.085 26 C -0.185 4.185 27 H 0.266 0.734 28 H 0.023 0.977 29 H 0.021 0.979 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.416 0.584 35 H 0.417 0.583 36 H 0.116 0.884 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.151 0.849 42 H 0.125 0.875 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.933 -20.554 -1.472 31.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.768 3.232 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.169 1.169 7 C -0.567 4.567 8 H 0.057 0.943 9 C -0.049 4.049 10 C -0.139 4.139 11 C 0.011 3.989 12 N -0.286 5.286 13 C 0.215 3.785 14 S -0.591 6.591 15 N -0.290 5.290 16 C 0.089 3.911 17 H 0.125 0.875 18 C -0.196 4.196 19 C -0.014 4.014 20 O -0.240 6.240 21 C 0.086 3.914 22 C -0.187 4.187 23 C -0.098 4.098 24 C -0.193 4.193 25 C -0.105 4.105 26 C -0.188 4.188 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.255 0.745 35 H 0.257 0.743 36 H 0.135 0.865 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.169 0.831 42 H 0.143 0.857 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 24.615 -19.676 -1.466 31.546 hybrid contribution -1.563 0.116 0.005 1.567 sum 23.052 -19.559 -1.461 30.267 Atomic orbital electron populations 1.70053 1.08216 1.28123 1.52728 1.25954 0.95543 1.03368 0.94250 0.85741 0.79632 0.78651 0.79188 1.19341 1.21199 1.16932 1.21443 0.91883 0.93201 1.50212 0.94340 1.19430 0.93975 0.94400 0.97055 1.21518 0.91543 0.98506 1.02363 1.21713 0.94046 0.79448 1.03684 1.45032 1.03210 1.11579 1.68829 1.21761 0.87334 0.89659 0.79791 1.93719 1.51563 1.36819 1.77043 1.44894 1.09459 1.03820 1.70837 1.20078 0.78166 0.99758 0.93130 0.87483 1.22532 0.98875 0.94068 1.04115 1.23239 0.94985 1.05373 0.77788 1.85986 1.77278 1.41358 1.19345 1.18817 0.93261 0.87833 0.91473 1.20830 1.03906 1.01954 0.91961 1.21254 0.95212 0.92982 1.00309 1.21291 1.00744 1.01013 0.96224 1.21892 0.99232 0.95925 0.93442 1.20043 1.02521 0.98899 0.97297 0.92532 0.95899 0.96092 0.91588 0.91445 0.90445 0.90554 0.74450 0.74307 0.86526 0.88786 0.91086 0.83666 0.83723 0.83128 0.85742 0.85134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.74 13.96 21.45 0.30 -58.44 16 2 C 0.01 0.33 5.47 84.65 0.46 0.80 16 3 Si 0.94 43.94 27.47 68.60 1.88 45.82 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 6 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 7 C -0.53 -29.23 9.66 25.60 0.25 -28.98 16 8 H 0.04 2.30 7.99 -2.91 -0.02 2.28 16 9 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 10 C -0.10 -3.32 5.27 30.59 0.16 -3.16 16 11 C 0.13 3.80 5.13 86.38 0.44 4.24 16 12 N -0.66 -13.89 5.56 -350.18 -1.95 -15.84 16 13 C 0.58 13.30 6.73 179.05 1.20 14.50 16 14 S -0.72 -23.67 24.44 -56.49 -1.38 -25.05 16 15 N -0.66 -10.28 4.86 -332.92 -1.62 -11.90 16 16 C 0.19 3.23 2.54 44.29 0.11 3.34 16 17 H 0.11 2.31 6.81 -2.39 -0.02 2.30 16 18 C -0.16 -1.35 5.67 30.75 0.17 -1.17 16 19 C 0.06 0.56 7.03 72.12 0.51 1.07 16 20 O -0.33 -5.32 10.27 -91.80 -0.94 -6.26 16 21 C 0.13 2.62 6.47 22.52 0.15 2.76 16 22 C -0.17 -3.12 9.94 22.43 0.22 -2.90 16 23 C -0.08 -1.47 10.04 22.22 0.22 -1.25 16 24 C -0.17 -3.95 10.04 22.25 0.22 -3.73 16 25 C -0.09 -2.15 8.62 22.30 0.19 -1.96 16 26 C -0.19 -3.93 5.56 -19.75 -0.11 -4.04 16 27 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 28 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 29 H 0.02 0.90 7.57 -2.38 -0.02 0.88 16 30 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.08 2.38 7.99 -2.39 -0.02 2.36 16 33 H 0.08 2.36 7.99 -2.39 -0.02 2.34 16 34 H 0.42 6.09 8.49 -92.71 -0.79 5.31 16 35 H 0.42 3.69 8.59 -92.71 -0.80 2.90 16 36 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.09 0.65 8.11 -2.39 -0.02 0.63 16 38 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.15 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 41 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 42 H 0.12 2.62 8.06 -2.91 -0.02 2.60 16 43 H 0.13 3.79 3.92 -12.60 -0.05 3.75 16 Total: -1.00 -75.65 357.37 -0.01 -75.67 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -0.64 Total: 16.81 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: 4.33 Total: -20.82 kcal Atomic # 7 Polarization: -82.91 SS G_CDS: -3.27 Total: -86.18 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.94 Total: -6.26 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.82 kcal Atomic # 16 Polarization: -23.67 SS G_CDS: -1.38 Total: -25.05 kcal Total: -75.65 -0.01 -75.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741492632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.689 kcal (2) G-P(sol) polarization free energy of solvation -75.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds