Wall clock time and date at job start Tue Mar 31 2020 13:36:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30607 * 1
3 3 Si 1.86801 * 120.00327 * 2 1
4 4 H 1.48491 * 109.47547 * 240.00234 * 3 2 1
5 5 H 1.48500 * 109.46768 * 0.02562 * 3 2 1
6 6 H 1.48497 * 109.46918 * 119.99651 * 3 2 1
7 7 C 1.40301 * 119.99876 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99955 * 189.91542 * 7 2 1
9 9 C 1.40859 * 120.00078 * 9.90995 * 7 2 1
10 10 C 1.40709 * 120.33058 * 34.90660 * 9 7 2
11 11 C 1.37597 * 119.88511 * 180.25589 * 10 9 7
12 12 C 1.38830 * 120.58284 * 359.73754 * 11 10 9
13 13 C 1.38199 * 120.68800 * 0.02606 * 12 11 10
14 14 C 1.39295 * 120.08140 * 359.97438 * 13 12 11
15 15 C 1.47288 * 120.28778 * 179.97438 * 14 13 12
16 16 O 1.21529 * 119.99985 * 177.16017 * 15 14 13
17 17 O 1.34806 * 119.99871 * 357.16187 * 15 14 13
18 18 C 1.45202 * 117.00023 * 179.97438 * 17 15 14
19 19 C 1.52998 * 109.47165 * 180.02562 * 18 17 15
20 20 O 1.42898 * 109.47207 * 64.99709 * 19 18 17
21 21 C 1.42906 * 113.99865 * 180.02562 * 20 19 18
22 22 C 1.53000 * 109.47025 * 180.02562 * 21 20 19
23 23 H 1.09003 * 110.35256 * 304.30409 * 22 21 20
24 24 C 1.55496 * 110.28223 * 182.20596 * 22 21 20
25 25 C 1.55299 * 100.69624 * 204.64981 * 24 22 21
26 26 C 1.54385 * 102.43460 * 34.12764 * 25 24 22
27 27 O 1.43232 * 107.59146 * 338.54269 * 26 25 24
28 28 H 0.97010 * 120.00184 * 359.97438 * 1 2 3
29 29 H 1.08007 * 120.05787 * 359.97146 * 10 9 7
30 30 H 1.08000 * 119.70520 * 179.76982 * 11 10 9
31 31 H 1.08006 * 119.66062 * 180.02562 * 12 11 10
32 32 H 1.07998 * 119.96112 * 179.97438 * 13 12 11
33 33 H 1.08997 * 109.46957 * 59.99750 * 18 17 15
34 34 H 1.09003 * 109.46808 * 300.00151 * 18 17 15
35 35 H 1.09005 * 109.47216 * 304.99699 * 19 18 17
36 36 H 1.09001 * 109.46715 * 184.99947 * 19 18 17
37 37 H 1.08996 * 109.47105 * 60.00022 * 21 20 19
38 38 H 1.09004 * 109.46993 * 300.00124 * 21 20 19
39 39 H 1.09000 * 111.33364 * 86.77744 * 24 22 21
40 40 H 1.09002 * 111.14921 * 322.44823 * 24 22 21
41 41 H 1.08995 * 110.85054 * 275.83522 * 25 24 22
42 42 H 1.09002 * 110.85066 * 152.41687 * 25 24 22
43 43 H 1.09004 * 109.83232 * 98.05985 * 26 25 24
44 44 H 1.09006 * 109.82874 * 219.02441 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3061 0.0000 0.0000
3 14 2.2402 1.6177 0.0000
4 1 3.0939 1.6964 -1.2124
5 1 1.2752 2.7464 0.0006
6 1 3.0938 1.6963 1.2125
7 6 2.0075 -1.2151 -0.0005
8 1 3.0754 -1.2221 0.1605
9 6 1.3190 -2.4257 -0.2110
10 6 0.2191 -2.4746 -1.0873
11 6 -0.4501 -3.6610 -1.2821
12 6 -0.0468 -4.8155 -0.6250
13 6 1.0332 -4.7958 0.2371
14 6 1.7310 -3.6102 0.4550
15 6 2.8823 -3.5838 1.3733
16 8 3.5191 -2.5592 1.5202
17 8 3.2297 -4.6964 2.0507
18 6 4.3752 -4.5975 2.9375
19 6 4.6153 -5.9490 3.6131
20 8 4.9828 -6.9158 2.6272
21 6 5.2303 -8.2202 3.1561
22 6 5.6142 -9.1677 2.0177
23 1 4.8413 -9.1695 1.2491
24 6 5.8338 -10.6065 2.5649
25 6 6.7881 -11.1834 1.4840
26 6 7.6247 -9.9485 1.0859
27 8 6.8778 -8.7828 1.4533
28 1 -0.4851 0.8401 0.0004
29 1 -0.1021 -1.5814 -1.6026
30 1 -1.2962 -3.6943 -1.9524
31 1 -0.5827 -5.7388 -0.7892
32 1 1.3365 -5.7008 0.7424
33 1 4.1821 -3.8402 3.6973
34 1 5.2574 -4.3177 2.3616
35 1 3.7032 -6.2712 4.1156
36 1 5.4180 -5.8522 4.3441
37 1 4.3308 -8.5892 3.6487
38 1 6.0457 -8.1708 3.8778
39 1 4.8980 -11.1642 2.6008
40 1 6.3146 -10.5862 3.5430
41 1 6.2247 -11.5616 0.6311
42 1 7.4233 -11.9634 1.9038
43 1 8.5768 -9.9601 1.6166
44 1 7.7997 -9.9516 0.0100
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000744614830.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:36:42
Heat of formation + Delta-G solvation = -162.817010 kcal
Electronic energy + Delta-G solvation = -26258.863852 eV
Core-core repulsion = 22334.020622 eV
Total energy + Delta-G solvation = -3924.843231 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.150 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-39.71587 -39.29461 -37.74020 -37.06756 -35.17932 -33.70356 -32.45455 -31.43357
-30.17092 -29.73377 -29.08682 -25.61839 -25.39793 -23.25126 -22.03709 -21.81386
-21.36782 -20.94230 -19.61244 -17.44352 -17.36519 -16.81953 -16.54931 -16.25240
-15.73016 -15.53189 -15.24910 -15.03159 -14.72321 -14.26792 -14.05582 -13.64832
-13.34781 -13.14581 -12.69797 -12.64112 -12.47808 -12.28020 -12.05866 -11.79699
-11.63886 -11.50855 -11.36289 -11.15990 -11.11433 -11.07972 -10.95814 -10.63623
-10.57596 -10.18034 -9.83856 -9.67501 -9.65953 -9.62550 -9.29093 -8.69046
-7.60674 -7.38588 -6.85776 -4.46043 2.25978 2.84146 3.07218 3.13369
3.24662 3.44737 3.63644 3.65118 3.93972 3.97701 4.14957 4.51907
4.61196 4.64208 4.87612 4.92487 5.03061 5.13745 5.25515 5.27973
5.31008 5.36222 5.39679 5.46483 5.54778 5.58323 5.66029 5.73018
5.85253 5.91167 6.16875 6.23011 6.39862 6.63520 6.84641 6.96992
7.08696 7.17035 7.20081 7.38251 7.52558 7.66241 7.92918 7.98236
8.17893 8.61550 8.75814 8.83096 9.17305 10.09493
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.017830 B = 0.002680 C = 0.002488
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1570.047574 B =10443.961676 C =11252.742737
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.787 5.787
2 C 0.070 3.930
3 Si 0.918 3.082
4 H -0.262 1.262
5 H -0.279 1.279
6 H -0.261 1.261
7 C -0.422 4.422
8 H 0.110 0.890
9 C 0.148 3.852
10 C -0.149 4.149
11 C -0.090 4.090
12 C -0.248 4.248
13 C -0.035 4.035
14 C -0.248 4.248
15 C 0.505 3.495
16 O -0.519 6.519
17 O -0.361 6.361
18 C 0.071 3.929
19 C 0.066 3.934
20 O -0.369 6.369
21 C 0.064 3.936
22 C 0.082 3.918
23 H 0.082 0.918
24 C -0.149 4.149
25 C -0.156 4.156
26 C 0.048 3.952
27 O -0.369 6.369
28 H 0.284 0.716
29 H 0.118 0.882
30 H 0.093 0.907
31 H 0.093 0.907
32 H 0.103 0.897
33 H 0.078 0.922
34 H 0.071 0.929
35 H 0.058 0.942
36 H 0.065 0.935
37 H 0.062 0.938
38 H 0.053 0.947
39 H 0.087 0.913
40 H 0.080 0.920
41 H 0.078 0.922
42 H 0.081 0.919
43 H 0.067 0.933
44 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.725 -16.721 5.988 19.788
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.412 5.412
2 C -0.149 4.149
3 Si 0.742 3.258
4 H -0.186 1.186
5 H -0.204 1.204
6 H -0.186 1.186
7 C -0.450 4.450
8 H 0.128 0.872
9 C 0.145 3.855
10 C -0.168 4.168
11 C -0.109 4.109
12 C -0.267 4.267
13 C -0.054 4.054
14 C -0.251 4.251
15 C 0.356 3.644
16 O -0.410 6.410
17 O -0.280 6.280
18 C -0.004 4.004
19 C -0.010 4.010
20 O -0.288 6.288
21 C -0.013 4.013
22 C 0.025 3.975
23 H 0.100 0.900
24 C -0.187 4.187
25 C -0.193 4.193
26 C -0.029 4.029
27 O -0.288 6.288
28 H 0.095 0.905
29 H 0.136 0.864
30 H 0.111 0.889
31 H 0.111 0.889
32 H 0.121 0.879
33 H 0.096 0.904
34 H 0.090 0.910
35 H 0.077 0.923
36 H 0.083 0.917
37 H 0.080 0.920
38 H 0.071 0.929
39 H 0.106 0.894
40 H 0.098 0.902
41 H 0.097 0.903
42 H 0.100 0.900
43 H 0.085 0.915
44 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 8.818 -16.001 5.842 19.182
hybrid contribution 0.235 0.457 0.481 0.703
sum 9.052 -15.544 6.323 19.067
Atomic orbital electron populations
1.69706 1.07828 1.29922 1.33752 1.26173 0.94818 1.01901 0.92048
0.86184 0.79989 0.79165 0.80430 1.18595 1.20368 1.18574 1.20318
0.97823 0.89539 1.37316 0.87217 1.17457 0.89998 0.90979 0.87115
1.21278 0.98630 0.96478 1.00442 1.20844 0.98023 0.93547 0.98482
1.20351 1.02310 0.97457 1.06628 1.20844 0.93555 0.95847 0.95111
1.18760 1.01879 0.96862 1.07596 1.21367 0.84232 0.80070 0.78741
1.90703 1.53610 1.31943 1.64793 1.86624 1.46424 1.39998 1.54977
1.22757 0.89000 0.95239 0.93372 1.22574 0.99142 0.88459 0.90844
1.88074 1.89370 1.18067 1.33262 1.22614 0.99387 0.84133 0.95205
1.23119 0.87484 0.91912 0.94999 0.89979 1.23339 1.00755 0.95178
0.99428 1.23113 0.98507 0.98472 0.99243 1.23137 0.95126 0.84485
1.00178 1.88553 1.29281 1.29252 1.81729 0.90477 0.86449 0.88895
0.88853 0.87904 0.90351 0.91027 0.92335 0.91693 0.91992 0.92906
0.89436 0.90162 0.90312 0.89985 0.91467 0.91368
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.79 -20.31 11.23 55.57 0.62 -19.68 16
2 C 0.07 1.79 5.24 -17.30 -0.09 1.70 16
3 Si 0.92 19.53 29.57 -169.99 -5.03 14.50 16
4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16
5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16
6 H -0.26 -5.67 7.11 56.52 0.40 -5.26 16
7 C -0.42 -11.69 7.78 -37.82 -0.29 -11.98 16
8 H 0.11 3.13 5.72 -52.49 -0.30 2.83 16
9 C 0.15 4.06 5.49 -106.53 -0.59 3.48 16
10 C -0.15 -3.83 8.62 -38.88 -0.34 -4.16 16
11 C -0.09 -2.06 10.01 -39.60 -0.40 -2.46 16
12 C -0.25 -5.50 10.03 -39.38 -0.39 -5.90 16
13 C -0.04 -0.82 9.60 -39.20 -0.38 -1.19 16
14 C -0.25 -6.44 5.92 -104.39 -0.62 -7.06 16
15 C 0.51 12.67 7.86 34.41 0.27 12.94 16
16 O -0.52 -13.93 13.30 -19.29 -0.26 -14.18 16
17 O -0.36 -7.78 9.44 -43.57 -0.41 -8.20 16
18 C 0.07 1.22 5.86 37.16 0.22 1.44 16
19 C 0.07 0.89 6.33 37.16 0.24 1.13 16
20 O -0.37 -5.69 10.31 -45.77 -0.47 -6.16 16
21 C 0.06 0.71 5.65 37.16 0.21 0.92 16
22 C 0.08 0.90 3.74 -25.40 -0.09 0.81 16
23 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16
24 C -0.15 -1.07 6.61 -24.19 -0.16 -1.23 16
25 C -0.16 -1.04 7.00 -24.79 -0.17 -1.21 16
26 C 0.05 0.43 7.80 37.88 0.30 0.72 16
27 O -0.37 -4.85 11.03 -36.86 -0.41 -5.26 16
28 H 0.28 6.65 8.29 -40.82 -0.34 6.31 16
29 H 0.12 3.03 6.68 -52.48 -0.35 2.68 16
30 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16
31 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16
32 H 0.10 2.18 7.60 -52.49 -0.40 1.78 16
33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16
34 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16
35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16
37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
38 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16
39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16
40 H 0.08 0.50 8.06 -51.93 -0.42 0.09 16
41 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16
42 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16
43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16
44 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16
LS Contribution 369.92 15.07 5.57 5.57
Total: -1.00 -31.91 369.92 -9.19 -41.10
By element:
Atomic # 1 Polarization: 10.88 SS G_CDS: -6.52 Total: 4.36 kcal
Atomic # 6 Polarization: -9.76 SS G_CDS: -2.29 Total: -12.05 kcal
Atomic # 7 Polarization: -20.31 SS G_CDS: 0.62 Total: -19.68 kcal
Atomic # 8 Polarization: -32.25 SS G_CDS: -1.55 Total: -33.80 kcal
Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal
Total LS contribution 5.57 Total: 5.57 kcal
Total: -31.91 -9.19 -41.10 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000744614830.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -121.716 kcal
(2) G-P(sol) polarization free energy of solvation -31.914 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.630 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.101 kcal
(6) G-S(sol) free energy of system = (1) + (5) -162.817 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds