Wall clock time and date at job start Tue Mar 31 2020 13:36:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30607 * 1
3 3 Si 1.86801 * 120.00327 * 2 1
4 4 H 1.48491 * 109.47547 * 240.00234 * 3 2 1
5 5 H 1.48500 * 109.46768 * 0.02562 * 3 2 1
6 6 H 1.48497 * 109.46918 * 119.99651 * 3 2 1
7 7 C 1.40301 * 119.99876 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99955 * 189.91542 * 7 2 1
9 9 C 1.40859 * 120.00078 * 9.90995 * 7 2 1
10 10 C 1.40709 * 120.33058 * 34.90660 * 9 7 2
11 11 C 1.37597 * 119.88511 * 180.25589 * 10 9 7
12 12 C 1.38830 * 120.58284 * 359.73754 * 11 10 9
13 13 C 1.38199 * 120.68800 * 0.02606 * 12 11 10
14 14 C 1.39295 * 120.08140 * 359.97438 * 13 12 11
15 15 C 1.47288 * 120.28778 * 179.97438 * 14 13 12
16 16 O 1.21529 * 119.99985 * 177.16017 * 15 14 13
17 17 O 1.34806 * 119.99871 * 357.16187 * 15 14 13
18 18 C 1.45202 * 117.00023 * 179.97438 * 17 15 14
19 19 C 1.52998 * 109.47165 * 180.02562 * 18 17 15
20 20 O 1.42898 * 109.47207 * 64.99709 * 19 18 17
21 21 C 1.42906 * 113.99865 * 180.02562 * 20 19 18
22 22 C 1.53000 * 109.47025 * 180.02562 * 21 20 19
23 23 H 1.09003 * 110.35256 * 304.30409 * 22 21 20
24 24 C 1.55496 * 110.28223 * 182.20596 * 22 21 20
25 25 C 1.55299 * 100.69624 * 204.64981 * 24 22 21
26 26 C 1.54385 * 102.43460 * 34.12764 * 25 24 22
27 27 O 1.43232 * 107.59146 * 338.54269 * 26 25 24
28 28 H 0.97010 * 120.00184 * 359.97438 * 1 2 3
29 29 H 1.08007 * 120.05787 * 359.97146 * 10 9 7
30 30 H 1.08000 * 119.70520 * 179.76982 * 11 10 9
31 31 H 1.08006 * 119.66062 * 180.02562 * 12 11 10
32 32 H 1.07998 * 119.96112 * 179.97438 * 13 12 11
33 33 H 1.08997 * 109.46957 * 59.99750 * 18 17 15
34 34 H 1.09003 * 109.46808 * 300.00151 * 18 17 15
35 35 H 1.09005 * 109.47216 * 304.99699 * 19 18 17
36 36 H 1.09001 * 109.46715 * 184.99947 * 19 18 17
37 37 H 1.08996 * 109.47105 * 60.00022 * 21 20 19
38 38 H 1.09004 * 109.46993 * 300.00124 * 21 20 19
39 39 H 1.09000 * 111.33364 * 86.77744 * 24 22 21
40 40 H 1.09002 * 111.14921 * 322.44823 * 24 22 21
41 41 H 1.08995 * 110.85054 * 275.83522 * 25 24 22
42 42 H 1.09002 * 110.85066 * 152.41687 * 25 24 22
43 43 H 1.09004 * 109.83232 * 98.05985 * 26 25 24
44 44 H 1.09006 * 109.82874 * 219.02441 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3061 0.0000 0.0000
3 14 2.2402 1.6177 0.0000
4 1 3.0939 1.6964 -1.2124
5 1 1.2752 2.7464 0.0006
6 1 3.0938 1.6963 1.2125
7 6 2.0075 -1.2151 -0.0005
8 1 3.0754 -1.2221 0.1605
9 6 1.3190 -2.4257 -0.2110
10 6 0.2191 -2.4746 -1.0873
11 6 -0.4501 -3.6610 -1.2821
12 6 -0.0468 -4.8155 -0.6250
13 6 1.0332 -4.7958 0.2371
14 6 1.7310 -3.6102 0.4550
15 6 2.8823 -3.5838 1.3733
16 8 3.5191 -2.5592 1.5202
17 8 3.2297 -4.6964 2.0507
18 6 4.3752 -4.5975 2.9375
19 6 4.6153 -5.9490 3.6131
20 8 4.9828 -6.9158 2.6272
21 6 5.2303 -8.2202 3.1561
22 6 5.6142 -9.1677 2.0177
23 1 4.8413 -9.1695 1.2491
24 6 5.8338 -10.6065 2.5649
25 6 6.7881 -11.1834 1.4840
26 6 7.6247 -9.9485 1.0859
27 8 6.8778 -8.7828 1.4533
28 1 -0.4851 0.8401 0.0004
29 1 -0.1021 -1.5814 -1.6026
30 1 -1.2962 -3.6943 -1.9524
31 1 -0.5827 -5.7388 -0.7892
32 1 1.3365 -5.7008 0.7424
33 1 4.1821 -3.8402 3.6973
34 1 5.2574 -4.3177 2.3616
35 1 3.7032 -6.2712 4.1156
36 1 5.4180 -5.8522 4.3441
37 1 4.3308 -8.5892 3.6487
38 1 6.0457 -8.1708 3.8778
39 1 4.8980 -11.1642 2.6008
40 1 6.3146 -10.5862 3.5430
41 1 6.2247 -11.5616 0.6311
42 1 7.4233 -11.9634 1.9038
43 1 8.5768 -9.9601 1.6166
44 1 7.7997 -9.9516 0.0100
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000744614830.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:36:42
Heat of formation + Delta-G solvation = -181.173948 kcal
Electronic energy + Delta-G solvation = -26259.659869 eV
Core-core repulsion = 22334.020622 eV
Total energy + Delta-G solvation = -3925.639247 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.150 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.15320 -40.46264 -39.19329 -38.55655 -36.99120 -35.61487 -33.17887 -32.50178
-31.89206 -31.48612 -30.37970 -27.47538 -26.25769 -24.88647 -23.43036 -22.81852
-22.51791 -22.15990 -21.45007 -19.38849 -18.48585 -18.22226 -17.74449 -17.46717
-17.12277 -16.93189 -16.68915 -16.36621 -16.02389 -15.77107 -15.19271 -15.16212
-14.76046 -14.46987 -14.30343 -14.10897 -13.79079 -13.49932 -13.42347 -13.06669
-12.87616 -12.84991 -12.65933 -12.53109 -12.39677 -12.28119 -12.17214 -12.07199
-11.99889 -11.68899 -11.52837 -11.50106 -11.18248 -10.69935 -10.55980 -10.47819
-9.51452 -9.32014 -8.75632 -6.47128 0.33301 0.99322 1.33418 1.45112
1.50437 1.99635 2.04313 2.18470 2.55786 2.71345 2.89505 3.55871
3.62638 3.78213 3.97363 3.99800 4.09325 4.15345 4.19396 4.26716
4.37908 4.41081 4.42740 4.51106 4.52287 4.59410 4.62322 4.69185
4.81905 4.89089 4.91659 4.98910 5.01221 5.06963 5.17758 5.24447
5.26491 5.51265 5.64301 5.80168 6.00152 6.05658 6.07776 6.27297
6.28810 6.62923 6.77247 6.87297 7.26246 8.22023
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.017830 B = 0.002680 C = 0.002488
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1570.047574 B =10443.961676 C =11252.742737
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.811 5.811
2 C 0.034 3.966
3 Si 0.982 3.018
4 H -0.257 1.257
5 H -0.256 1.256
6 H -0.271 1.271
7 C -0.461 4.461
8 H 0.088 0.912
9 C 0.120 3.880
10 C -0.174 4.174
11 C -0.082 4.082
12 C -0.237 4.237
13 C -0.038 4.038
14 C -0.275 4.275
15 C 0.503 3.497
16 O -0.547 6.547
17 O -0.360 6.360
18 C 0.061 3.939
19 C 0.074 3.926
20 O -0.407 6.407
21 C 0.059 3.941
22 C 0.071 3.929
23 H 0.063 0.937
24 C -0.138 4.138
25 C -0.149 4.149
26 C 0.036 3.964
27 O -0.408 6.408
28 H 0.294 0.706
29 H 0.107 0.893
30 H 0.128 0.872
31 H 0.135 0.865
32 H 0.124 0.876
33 H 0.088 0.912
34 H 0.057 0.943
35 H 0.074 0.926
36 H 0.100 0.900
37 H 0.085 0.915
38 H 0.066 0.934
39 H 0.105 0.895
40 H 0.093 0.907
41 H 0.081 0.919
42 H 0.105 0.895
43 H 0.077 0.923
44 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.272 -18.853 6.855 21.699
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.437 5.437
2 C -0.183 4.183
3 Si 0.803 3.197
4 H -0.181 1.181
5 H -0.179 1.179
6 H -0.196 1.196
7 C -0.489 4.489
8 H 0.106 0.894
9 C 0.116 3.884
10 C -0.193 4.193
11 C -0.101 4.101
12 C -0.256 4.256
13 C -0.057 4.057
14 C -0.278 4.278
15 C 0.354 3.646
16 O -0.441 6.441
17 O -0.278 6.278
18 C -0.013 4.013
19 C -0.002 4.002
20 O -0.327 6.327
21 C -0.017 4.017
22 C 0.014 3.986
23 H 0.081 0.919
24 C -0.176 4.176
25 C -0.187 4.187
26 C -0.040 4.040
27 O -0.328 6.328
28 H 0.105 0.895
29 H 0.125 0.875
30 H 0.146 0.854
31 H 0.153 0.847
32 H 0.142 0.858
33 H 0.106 0.894
34 H 0.075 0.925
35 H 0.093 0.907
36 H 0.118 0.882
37 H 0.103 0.897
38 H 0.084 0.916
39 H 0.123 0.877
40 H 0.112 0.888
41 H 0.100 0.900
42 H 0.124 0.876
43 H 0.095 0.905
44 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 8.352 -18.177 6.711 21.099
hybrid contribution 0.388 0.924 0.221 1.026
sum 8.740 -17.253 6.932 20.545
Atomic orbital electron populations
1.69714 1.08707 1.31251 1.34005 1.26876 0.95672 1.04460 0.91249
0.85257 0.78927 0.75655 0.79909 1.18126 1.17925 1.19581 1.20303
0.97130 0.91189 1.40251 0.89414 1.17835 0.91067 0.91633 0.87841
1.21275 0.99398 0.97481 1.01149 1.21248 0.98109 0.92630 0.98102
1.20830 1.01373 0.98704 1.04712 1.21123 0.93580 0.95591 0.95362
1.19125 1.02817 0.97684 1.08189 1.21408 0.83950 0.80423 0.78801
1.90675 1.54528 1.33154 1.65753 1.86584 1.47875 1.38205 1.55166
1.23166 0.86868 0.98498 0.92738 1.22608 1.01148 0.86118 0.90372
1.88022 1.89756 1.20004 1.34962 1.22867 1.00890 0.82348 0.95607
1.23281 0.86369 0.94246 0.94725 0.91872 1.23333 1.01837 0.92539
0.99880 1.23121 0.98369 0.97814 0.99375 1.23353 0.95686 0.84664
1.00301 1.88509 1.30353 1.31760 1.82193 0.89499 0.87533 0.85390
0.84748 0.85835 0.89436 0.92469 0.90740 0.88230 0.89742 0.91553
0.87674 0.88850 0.90008 0.87647 0.90469 0.91643
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.81 -42.71 11.23 21.88 0.25 -42.46 16
2 C 0.03 1.80 5.24 85.38 0.45 2.25 16
3 Si 0.98 41.00 29.57 68.60 2.03 43.03 16
4 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16
5 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16
6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16
7 C -0.46 -26.77 7.78 23.41 0.18 -26.58 16
8 H 0.09 5.35 5.72 -2.91 -0.02 5.33 16
9 C 0.12 6.79 5.49 -21.10 -0.12 6.67 16
10 C -0.17 -9.05 8.62 22.72 0.20 -8.85 16
11 C -0.08 -3.63 10.01 22.26 0.22 -3.41 16
12 C -0.24 -9.89 10.03 22.40 0.22 -9.66 16
13 C -0.04 -1.75 9.60 22.52 0.22 -1.53 16
14 C -0.28 -14.63 5.92 -19.71 -0.12 -14.75 16
15 C 0.50 26.11 7.86 70.20 0.55 26.66 16
16 O -0.55 -30.88 13.30 19.74 0.26 -30.62 16
17 O -0.36 -15.73 9.44 -54.51 -0.51 -16.25 16
18 C 0.06 2.13 5.86 71.98 0.42 2.55 16
19 C 0.07 1.87 6.33 71.98 0.46 2.33 16
20 O -0.41 -12.27 10.31 -138.90 -1.43 -13.71 16
21 C 0.06 1.22 5.65 71.98 0.41 1.63 16
22 C 0.07 1.49 3.74 31.45 0.12 1.61 16
23 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16
24 C -0.14 -1.63 6.61 32.24 0.21 -1.42 16
25 C -0.15 -1.66 7.00 31.85 0.22 -1.44 16
26 C 0.04 0.62 7.80 72.45 0.56 1.19 16
27 O -0.41 -10.73 11.03 -147.43 -1.63 -12.36 16
28 H 0.29 13.84 8.29 -92.70 -0.77 13.07 16
29 H 0.11 5.66 6.68 -2.91 -0.02 5.64 16
30 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16
31 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16
32 H 0.12 5.03 7.60 -2.91 -0.02 5.00 16
33 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16
34 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16
35 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16
36 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16
37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16
38 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16
39 H 0.10 0.87 8.14 -2.39 -0.02 0.86 16
40 H 0.09 0.87 8.06 -2.39 -0.02 0.85 16
41 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16
42 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16
43 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16
44 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16
Total: -1.00 -72.85 369.92 4.17 -68.68
By element:
Atomic # 1 Polarization: 25.43 SS G_CDS: 0.99 Total: 26.43 kcal
Atomic # 6 Polarization: -26.97 SS G_CDS: 4.21 Total: -22.76 kcal
Atomic # 7 Polarization: -42.71 SS G_CDS: 0.25 Total: -42.46 kcal
Atomic # 8 Polarization: -69.62 SS G_CDS: -3.31 Total: -72.93 kcal
Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal
Total: -72.85 4.17 -68.68 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000744614830.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -112.489 kcal
(2) G-P(sol) polarization free energy of solvation -72.854 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.343 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.685 kcal
(6) G-S(sol) free energy of system = (1) + (5) -181.174 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds