Wall clock time and date at job start Tue Mar 31 2020 13:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86801 * 119.99949 * 2 1 4 4 H 1.48496 * 109.47394 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46992 * 300.00294 * 3 2 1 6 6 H 1.48498 * 109.47048 * 59.99975 * 3 2 1 7 7 C 1.38650 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00048 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00326 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00101 * 185.05731 * 9 7 2 11 11 C 1.38878 * 120.07147 * 354.46447 * 10 9 7 12 12 C 1.38094 * 119.92859 * 179.72501 * 11 10 9 13 13 C 1.38302 * 120.07461 * 0.27306 * 12 11 10 14 14 C 1.50696 * 119.93469 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47082 * 89.99539 * 14 13 12 16 16 O 1.20827 * 120.00306 * 0.02562 * 15 14 13 17 17 O 1.34234 * 119.99577 * 180.02562 * 15 14 13 18 18 C 1.45200 * 116.99706 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47196 * 179.97438 * 18 17 15 20 20 H 1.08996 * 109.51893 * 55.00231 * 19 18 17 21 21 C 1.53174 * 109.52225 * 175.12363 * 19 18 17 22 22 C 1.53193 * 109.03029 * 176.82520 * 21 19 18 23 23 C 1.53087 * 109.21493 * 303.11371 * 22 21 19 24 24 O 1.42911 * 109.40992 * 57.57966 * 23 22 21 25 25 C 1.42901 * 114.09461 * 298.83685 * 24 23 22 26 26 C 1.38300 * 120.13444 * 0.02562 * 13 12 11 27 27 C 1.38104 * 120.06842 * 359.97438 * 26 13 12 28 28 H 0.97006 * 120.00005 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.03039 * 359.97438 * 11 10 9 30 30 H 1.08002 * 119.96210 * 180.25485 * 12 11 10 31 31 H 1.08993 * 109.47252 * 210.00252 * 14 13 12 32 32 H 1.09004 * 109.47067 * 330.00237 * 14 13 12 33 33 H 1.09000 * 109.47092 * 300.00298 * 18 17 15 34 34 H 1.09010 * 109.47104 * 60.00010 * 18 17 15 35 35 H 1.08999 * 109.55050 * 296.75862 * 21 19 18 36 36 H 1.09004 * 109.54170 * 57.02561 * 21 19 18 37 37 H 1.09001 * 109.52330 * 183.17517 * 22 21 19 38 38 H 1.09001 * 109.51523 * 63.05555 * 22 21 19 39 39 H 1.09000 * 109.48251 * 297.59471 * 23 22 21 40 40 H 1.08999 * 109.48721 * 177.55632 * 23 22 21 41 41 H 1.09005 * 109.47957 * 301.17647 * 25 24 23 42 42 H 1.08998 * 109.47939 * 181.14740 * 25 24 23 43 43 H 1.07996 * 119.96721 * 179.97438 * 26 13 12 44 44 H 1.08003 * 120.03314 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3465 -0.0006 5 1 1.8907 2.3965 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1055 11 6 3.4573 -3.4394 0.0921 12 6 4.2025 -4.5965 0.2059 13 6 3.5689 -5.8198 0.3275 14 6 4.3852 -7.0803 0.4521 15 6 4.6582 -7.3603 1.9076 16 8 4.2330 -6.6131 2.7566 17 8 5.3736 -8.4398 2.2606 18 6 5.5969 -8.6470 3.6803 19 6 6.4247 -9.9171 3.8863 20 1 7.3457 -9.8495 3.3073 21 6 6.7642 -10.0715 5.3720 22 6 7.5240 -11.3859 5.5768 23 6 6.6751 -12.5458 5.0499 24 8 6.3705 -12.3236 3.6715 25 6 5.6184 -11.1338 3.4247 26 6 2.1877 -5.8885 0.3351 27 6 1.4368 -4.7350 0.2216 28 1 -0.4850 0.8401 0.0004 29 1 3.9527 -2.4845 -0.0033 30 1 5.2814 -4.5460 0.1996 31 1 3.8338 -7.9146 0.0188 32 1 5.3299 -6.9552 -0.0771 33 1 6.1335 -7.7923 4.0923 34 1 4.6378 -8.7526 4.1874 35 1 7.3863 -9.2358 5.6926 36 1 5.8443 -10.0882 5.9564 37 1 7.7204 -11.5314 6.6390 38 1 8.4682 -11.3492 5.0334 39 1 5.7491 -12.6076 5.6216 40 1 7.2295 -13.4786 5.1538 41 1 4.6785 -11.1772 3.9751 42 1 5.4115 -11.0493 2.3579 43 1 1.6957 -6.8453 0.4298 44 1 0.3581 -4.7895 0.2271 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766311680.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:42 Heat of formation + Delta-G solvation = -169.695448 kcal Electronic energy + Delta-G solvation = -25700.558650 eV Core-core repulsion = 21775.417148 eV Total energy + Delta-G solvation = -3925.141502 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.64322 -40.73752 -40.23979 -38.50025 -37.45553 -35.11524 -34.42572 -33.12057 -32.60441 -31.80808 -28.76872 -27.54728 -26.81418 -26.01706 -23.67065 -23.58543 -22.66400 -21.56400 -21.04416 -19.86925 -18.87513 -18.61764 -17.80275 -17.54934 -16.95795 -16.83828 -16.41410 -16.31037 -15.96044 -15.76834 -15.54524 -15.32000 -15.13459 -14.74615 -14.48198 -14.38148 -14.10492 -13.80857 -13.60623 -13.59524 -13.05255 -12.98082 -12.83744 -12.53779 -12.40506 -12.29461 -12.25907 -12.10806 -12.10577 -11.83953 -11.62873 -11.40460 -11.25300 -11.19603 -10.81201 -10.43977 -9.79196 -8.96076 -8.48963 -6.17164 0.57461 0.59309 1.27226 1.33739 1.41503 1.52372 1.75157 2.16401 2.81844 2.92289 3.14754 3.49579 3.61820 3.67933 3.72649 3.81943 3.98317 4.02242 4.09388 4.16676 4.18934 4.27743 4.38173 4.43864 4.49554 4.52194 4.56975 4.67548 4.69083 4.78225 4.81143 4.90255 4.96188 5.03705 5.06182 5.13096 5.16710 5.26877 5.31675 5.45851 5.53845 5.69531 5.72509 6.01324 6.19846 6.24030 6.82819 6.95692 7.76145 8.74498 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.031006 B = 0.001976 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.824456 B =14169.803840 C =14564.705406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.024 4.024 3 Si 1.020 2.980 4 H -0.252 1.252 5 H -0.266 1.266 6 H -0.269 1.269 7 C -0.414 4.414 8 H 0.101 0.899 9 O -0.232 6.232 10 C 0.116 3.884 11 C -0.245 4.245 12 C -0.056 4.056 13 C -0.158 4.158 14 C -0.049 4.049 15 C 0.462 3.538 16 O -0.538 6.538 17 O -0.354 6.354 18 C 0.070 3.930 19 C -0.113 4.113 20 H 0.089 0.911 21 C -0.118 4.118 22 C -0.150 4.150 23 C 0.049 3.951 24 O -0.401 6.401 25 C 0.066 3.934 26 C -0.053 4.053 27 C -0.207 4.207 28 H 0.273 0.727 29 H 0.119 0.881 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.106 0.894 41 H 0.054 0.946 42 H 0.100 0.900 43 H 0.150 0.850 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.768 -24.136 8.003 30.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.175 1.175 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.490 4.490 8 H 0.119 0.881 9 O -0.138 6.138 10 C 0.065 3.935 11 C -0.264 4.264 12 C -0.074 4.074 13 C -0.159 4.159 14 C -0.086 4.086 15 C 0.306 3.694 16 O -0.427 6.427 17 O -0.271 6.271 18 C -0.004 4.004 19 C -0.132 4.132 20 H 0.107 0.893 21 C -0.156 4.156 22 C -0.187 4.187 23 C -0.027 4.027 24 O -0.320 6.320 25 C -0.011 4.011 26 C -0.071 4.071 27 C -0.226 4.226 28 H 0.082 0.918 29 H 0.136 0.864 30 H 0.159 0.841 31 H 0.160 0.840 32 H 0.157 0.843 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.124 0.876 41 H 0.073 0.927 42 H 0.118 0.882 43 H 0.168 0.832 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 16.308 -23.891 8.126 30.046 hybrid contribution -0.315 1.520 0.460 1.619 sum 15.993 -22.372 8.586 28.809 Atomic orbital electron populations 1.70194 1.08019 1.28760 1.48872 1.26621 0.96904 1.02793 0.95856 0.84511 0.78207 0.74742 0.78612 1.17496 1.19096 1.19419 1.21869 0.92528 0.81440 1.53142 0.88126 1.83940 1.36003 1.12625 1.81282 1.19975 0.91676 0.87998 0.93815 1.21233 0.93115 1.00058 1.12022 1.20965 0.99883 0.91012 0.95524 1.19202 0.93413 0.94185 1.09108 1.20243 1.03476 0.96855 0.88005 1.24367 0.73905 0.77527 0.93556 1.90726 1.49592 1.48378 1.54012 1.86489 1.66843 1.44713 1.29070 1.23115 1.00555 0.98485 0.78208 1.21784 0.99727 0.92902 0.98741 0.89254 1.21619 1.01501 0.99028 0.93450 1.22156 0.99365 0.94182 1.03040 1.22818 0.99110 0.99049 0.81732 1.87939 1.74712 1.42636 1.26761 1.22651 0.92995 0.83180 1.02270 1.20911 0.93339 0.97158 0.95666 1.20452 1.00020 0.90601 1.11526 0.91807 0.86352 0.84109 0.83964 0.84300 0.91243 0.91359 0.90325 0.90972 0.88800 0.91075 0.92513 0.87582 0.92739 0.88226 0.83202 0.86791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.39 13.67 21.61 0.30 -57.09 16 2 C -0.02 -1.41 5.49 84.83 0.47 -0.95 16 3 Si 1.02 43.64 29.55 68.60 2.03 45.67 16 4 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.41 -24.66 9.49 67.92 0.64 -24.01 16 8 H 0.10 5.53 5.20 -2.91 -0.02 5.51 16 9 O -0.23 -14.33 9.76 -22.72 -0.22 -14.55 16 10 C 0.12 5.95 6.65 22.58 0.15 6.10 16 11 C -0.25 -11.01 9.17 22.39 0.21 -10.80 16 12 C -0.06 -1.96 9.69 22.25 0.22 -1.74 16 13 C -0.16 -4.87 4.38 -19.84 -0.09 -4.95 16 14 C -0.05 -0.98 5.94 29.10 0.17 -0.80 16 15 C 0.46 11.35 7.95 71.24 0.57 11.92 16 16 O -0.54 -18.23 15.78 21.96 0.35 -17.89 16 17 O -0.35 -7.10 9.82 -51.46 -0.51 -7.61 16 18 C 0.07 1.25 4.85 71.98 0.35 1.59 16 19 C -0.11 -1.55 2.63 -10.71 -0.03 -1.57 16 20 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 21 C -0.12 -1.25 5.32 30.72 0.16 -1.09 16 22 C -0.15 -1.32 6.13 30.69 0.19 -1.13 16 23 C 0.05 0.52 6.84 72.01 0.49 1.02 16 24 O -0.40 -6.65 10.77 -148.98 -1.60 -8.25 16 25 C 0.07 0.96 6.00 72.01 0.43 1.40 16 26 C -0.05 -1.79 9.69 22.25 0.22 -1.58 16 27 C -0.21 -9.07 9.99 22.39 0.22 -8.84 16 28 H 0.27 15.51 8.31 -92.70 -0.77 14.73 16 29 H 0.12 5.40 5.64 -2.91 -0.02 5.39 16 30 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 31 H 0.14 1.92 8.08 -2.39 -0.02 1.90 16 32 H 0.14 1.97 8.08 -2.38 -0.02 1.95 16 33 H 0.07 1.30 8.13 -2.39 -0.02 1.28 16 34 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.10 1.48 7.90 -2.39 -0.02 1.46 16 43 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 44 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -78.59 369.68 5.71 -72.88 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 1.00 Total: 22.30 kcal Atomic # 6 Polarization: -39.82 SS G_CDS: 4.37 Total: -35.45 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.30 Total: -57.09 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -1.98 Total: -48.30 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -78.59 5.71 -72.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766311680.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.813 kcal (2) G-P(sol) polarization free energy of solvation -78.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds