Wall clock time and date at job start Tue Mar 31 2020 13:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86803 * 120.00015 * 2 1 4 4 H 1.48503 * 109.46709 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47103 * 300.00482 * 3 2 1 6 6 H 1.48497 * 109.47133 * 60.00417 * 3 2 1 7 7 C 1.39946 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99705 * 163.70411 * 7 2 1 9 9 C 1.41393 * 120.00386 * 343.70523 * 7 2 1 10 10 C 1.40742 * 120.24219 * 334.19498 * 9 7 2 11 11 C 1.37595 * 119.74125 * 180.31999 * 10 9 7 12 12 C 1.38657 * 120.25070 * 359.65697 * 11 10 9 13 13 C 1.38611 * 120.50128 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24896 * 0.02562 * 13 12 11 15 15 C 1.50702 * 120.12681 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.46996 * 264.99836 * 15 14 13 17 17 O 1.20818 * 120.00050 * 0.02562 * 16 15 14 18 18 O 1.34226 * 119.99520 * 180.27570 * 16 15 14 19 19 C 1.45199 * 116.99799 * 179.72469 * 18 16 15 20 20 C 1.53003 * 109.47157 * 180.02562 * 19 18 16 21 21 C 1.52996 * 109.47273 * 179.97438 * 20 19 18 22 22 O 1.42969 * 109.47434 * 295.00091 * 21 20 19 23 23 C 1.43085 * 113.77026 * 181.20139 * 22 21 20 24 24 C 1.53266 * 108.94372 * 57.97464 * 23 22 21 25 25 C 1.53262 * 108.84261 * 305.47282 * 24 23 22 26 26 O 1.42965 * 109.47480 * 174.99907 * 21 20 19 27 27 H 0.97004 * 120.00092 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.12643 * 0.02562 * 10 9 7 29 29 H 1.07996 * 119.87168 * 179.68300 * 11 10 9 30 30 H 1.08000 * 119.74851 * 180.02562 * 12 11 10 31 31 H 1.07997 * 119.87718 * 179.97438 * 13 12 11 32 32 H 1.09003 * 109.46556 * 145.00041 * 15 14 13 33 33 H 1.08995 * 109.47041 * 24.99814 * 15 14 13 34 34 H 1.08998 * 109.47647 * 300.00146 * 19 18 16 35 35 H 1.08998 * 109.47121 * 60.00147 * 19 18 16 36 36 H 1.08997 * 109.47321 * 300.00180 * 20 19 18 37 37 H 1.08998 * 109.47020 * 60.00042 * 20 19 18 38 38 H 1.09010 * 109.47155 * 55.00261 * 21 20 19 39 39 H 1.09004 * 109.56255 * 298.13167 * 23 22 21 40 40 H 1.09000 * 109.64774 * 177.86534 * 23 22 21 41 41 H 1.08992 * 109.57638 * 185.66842 * 24 23 22 42 42 H 1.08994 * 109.67976 * 65.34388 * 24 23 22 43 43 H 1.09005 * 109.56053 * 294.68791 * 25 24 23 44 44 H 1.08996 * 109.64945 * 174.41541 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8834 2.3965 -1.2124 6 1 1.8836 2.3964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0553 -1.2307 -0.2630 9 6 1.3435 -2.4121 0.3425 10 6 0.2102 -2.3815 1.1763 11 6 -0.4245 -3.5561 1.5089 12 6 0.0443 -4.7661 1.0202 13 6 1.1557 -4.8075 0.1929 14 6 1.8070 -3.6450 -0.1521 15 6 3.0154 -3.6933 -1.0513 16 6 4.2661 -3.7192 -0.2110 17 8 4.1845 -3.7008 0.9943 18 8 5.4708 -3.7575 -0.8017 19 6 6.6320 -3.7745 0.0698 20 6 7.9051 -3.8175 -0.7777 21 6 9.1288 -3.8348 0.1406 22 8 9.1982 -2.6043 0.8652 23 6 10.3296 -2.5111 1.7363 24 6 11.6091 -2.6810 0.9099 25 6 11.5195 -3.9931 0.1229 26 8 10.3124 -3.9923 -0.6456 27 1 -0.4850 0.8401 0.0004 28 1 -0.1571 -1.4401 1.5575 29 1 -1.2913 -3.5356 2.1528 30 1 -0.4603 -5.6831 1.2861 31 1 1.5125 -5.7555 -0.1818 32 1 3.0266 -2.8118 -1.6924 33 1 2.9735 -4.5908 -1.6683 34 1 6.6367 -2.8758 0.6865 35 1 6.5921 -4.6549 0.7111 36 1 7.9007 -4.7161 -1.3947 37 1 7.9448 -2.9369 -1.4187 38 1 9.0452 -4.6652 0.8418 39 1 10.2752 -3.2962 2.4905 40 1 10.3371 -1.5364 2.2242 41 1 12.4720 -2.7124 1.5751 42 1 11.7123 -1.8459 0.2171 43 1 11.5102 -4.8344 0.8160 44 1 12.3769 -4.0795 -0.5444 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777160456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:10 Heat of formation + Delta-G solvation = -173.243913 kcal Electronic energy + Delta-G solvation = -26522.672268 eV Core-core repulsion = 22597.376893 eV Total energy + Delta-G solvation = -3925.295375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.30668 -39.78696 -37.63399 -36.04864 -35.91877 -33.87544 -33.63689 -31.88525 -31.17793 -29.47912 -27.26278 -26.34860 -25.53654 -24.88085 -22.05667 -21.46808 -21.06993 -20.90003 -19.31156 -17.71390 -17.20935 -17.15612 -16.62571 -16.55537 -15.98095 -15.54564 -15.21832 -15.17506 -15.08080 -14.47406 -14.07904 -13.65352 -13.63554 -13.31795 -13.13897 -12.74262 -12.59188 -11.96169 -11.86256 -11.82185 -11.62132 -11.55694 -11.39856 -11.28448 -11.15178 -11.03134 -10.97951 -10.70177 -10.38289 -10.36790 -10.14501 -9.99830 -9.69565 -9.50439 -9.38644 -9.17026 -7.35375 -7.32432 -6.74942 -4.36641 2.64352 2.84790 2.99987 3.07928 3.09901 3.16065 3.26578 3.32173 3.68325 3.95260 4.33100 4.34812 4.52626 4.65044 4.70090 4.78473 4.96156 4.99649 5.05159 5.12273 5.36176 5.39708 5.43639 5.61027 5.63922 5.76933 5.87563 5.90949 6.01193 6.15810 6.27546 6.43032 6.49762 6.54945 6.75658 6.82999 7.01628 7.07868 7.27707 7.39838 7.62774 7.89441 8.04446 8.11086 8.29136 8.50951 8.63881 8.89562 8.98719 10.18991 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.014036 B = 0.003065 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.351330 B = 9132.136711 C =10490.691315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.078 3.922 3 Si 0.903 3.097 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.457 4.457 8 H 0.075 0.925 9 C 0.130 3.870 10 C -0.158 4.158 11 C -0.104 4.104 12 C -0.241 4.241 13 C -0.077 4.077 14 C -0.195 4.195 15 C -0.041 4.041 16 C 0.459 3.541 17 O -0.492 6.492 18 O -0.367 6.367 19 C 0.072 3.928 20 C -0.104 4.104 21 C 0.253 3.747 22 O -0.387 6.387 23 C 0.055 3.945 24 C -0.193 4.193 25 C 0.057 3.943 26 O -0.390 6.390 27 H 0.280 0.720 28 H 0.118 0.882 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.054 0.946 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.858 -5.061 -0.358 19.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.486 4.486 8 H 0.093 0.907 9 C 0.127 3.873 10 C -0.178 4.178 11 C -0.123 4.123 12 C -0.260 4.260 13 C -0.095 4.095 14 C -0.196 4.196 15 C -0.078 4.078 16 C 0.302 3.698 17 O -0.377 6.377 18 O -0.285 6.285 19 C -0.003 4.003 20 C -0.142 4.142 21 C 0.158 3.842 22 O -0.307 6.307 23 C -0.021 4.021 24 C -0.231 4.231 25 C -0.019 4.019 26 O -0.311 6.311 27 H 0.091 0.909 28 H 0.136 0.864 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.126 0.874 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.119 0.881 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.072 0.928 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 18.511 -4.766 -0.202 19.116 hybrid contribution 0.716 0.640 0.594 1.129 sum 19.227 -4.126 0.392 19.669 Atomic orbital electron populations 1.69825 1.07505 1.29105 1.35325 1.25887 0.94711 1.01240 0.92179 0.86335 0.81187 0.81138 0.78602 1.18346 1.19884 1.19672 1.19537 0.97276 0.91013 1.40813 0.90698 1.17362 0.90796 0.91236 0.87865 1.21312 0.98880 0.96749 1.00828 1.20698 0.98590 0.93436 0.99561 1.20314 1.01618 0.96237 1.07823 1.20323 0.95871 0.95505 0.97799 1.19064 0.99513 0.94285 1.06781 1.19987 0.86702 1.04238 0.96904 1.24484 0.84196 0.72155 0.88977 1.90638 1.86980 1.43961 1.16109 1.86486 1.15196 1.85096 1.41758 1.22638 0.82572 1.03023 0.92060 1.21338 0.89243 1.05705 0.97892 1.23189 0.86034 0.86192 0.88811 1.88196 1.45494 1.39385 1.57662 1.22664 0.84734 1.03197 0.91538 1.22797 0.99419 0.99921 1.00993 1.22657 0.87656 0.96083 0.95523 1.88106 1.14586 1.92918 1.35465 0.90915 0.86405 0.89468 0.89524 0.89539 0.87397 0.89348 0.90410 0.91694 0.88520 0.88942 0.92277 0.92724 0.88068 0.89684 0.89842 0.92784 0.88179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.43 10.95 55.55 0.61 -19.83 16 2 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 3 Si 0.90 19.06 29.59 -169.99 -5.03 14.03 16 4 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 7 C -0.46 -12.12 8.14 -37.74 -0.31 -12.42 16 8 H 0.07 1.95 6.67 -52.49 -0.35 1.60 16 9 C 0.13 3.48 5.56 -106.82 -0.59 2.89 16 10 C -0.16 -4.22 8.69 -38.87 -0.34 -4.56 16 11 C -0.10 -2.53 10.02 -39.66 -0.40 -2.93 16 12 C -0.24 -5.56 10.05 -39.29 -0.39 -5.96 16 13 C -0.08 -1.76 9.66 -39.66 -0.38 -2.15 16 14 C -0.19 -4.71 4.43 -103.91 -0.46 -5.17 16 15 C -0.04 -0.83 5.29 -29.03 -0.15 -0.99 16 16 C 0.46 9.51 7.57 36.01 0.27 9.78 16 17 O -0.49 -11.78 15.78 -18.74 -0.30 -12.08 16 18 O -0.37 -6.47 10.22 -39.25 -0.40 -6.87 16 19 C 0.07 1.08 5.36 37.16 0.20 1.27 16 20 C -0.10 -1.27 5.67 -26.73 -0.15 -1.42 16 21 C 0.25 2.88 3.25 37.16 0.12 3.00 16 22 O -0.39 -4.83 10.07 -59.03 -0.59 -5.43 16 23 C 0.06 0.48 6.96 37.29 0.26 0.74 16 24 C -0.19 -1.37 6.35 -26.46 -0.17 -1.54 16 25 C 0.06 0.44 6.96 37.29 0.26 0.70 16 26 O -0.39 -4.34 10.54 -59.03 -0.62 -4.96 16 27 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 28 H 0.12 3.22 6.20 -52.49 -0.33 2.89 16 29 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 30 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 31 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 32 H 0.11 2.17 7.08 -51.93 -0.37 1.80 16 33 H 0.09 1.50 8.05 -51.93 -0.42 1.08 16 34 H 0.08 1.29 7.81 -51.93 -0.41 0.88 16 35 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 36 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 367.32 15.07 5.54 5.54 Total: -1.00 -31.16 367.32 -9.62 -40.78 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.50 Total: 5.70 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -2.33 Total: -16.88 kcal Atomic # 7 Polarization: -20.43 SS G_CDS: 0.61 Total: -19.83 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -1.91 Total: -29.34 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.16 -9.62 -40.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777160456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.462 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds