Wall clock time and date at job start Tue Mar 31 2020 13:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86791 * 119.99906 * 2 1 4 4 H 1.48501 * 109.47186 * 270.00168 * 3 2 1 5 5 H 1.48506 * 109.47179 * 29.99786 * 3 2 1 6 6 H 1.48499 * 109.47351 * 150.00175 * 3 2 1 7 7 C 1.40245 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00124 * 197.88574 * 7 2 1 9 9 C 1.41092 * 119.99753 * 17.89685 * 7 2 1 10 10 C 1.40908 * 120.09415 * 204.64999 * 9 7 2 11 11 C 1.36301 * 119.89450 * 179.97438 * 10 9 7 12 12 C 1.40064 * 120.10395 * 359.97438 * 11 10 9 13 13 C 1.47506 * 119.90074 * 180.02562 * 12 11 10 14 14 O 1.21506 * 120.00026 * 0.02562 * 13 12 11 15 15 O 1.34774 * 119.99950 * 180.02562 * 13 12 11 16 16 C 1.45204 * 117.00154 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47177 * 179.97438 * 16 15 13 18 18 O 1.42899 * 109.47355 * 65.00058 * 17 16 15 19 19 C 1.42895 * 114.00345 * 179.97438 * 18 17 16 20 20 H 1.08999 * 109.47814 * 54.99885 * 19 18 17 21 21 C 1.53086 * 109.48307 * 175.02153 * 19 18 17 22 22 C 1.53179 * 109.16721 * 177.60231 * 21 19 18 23 23 C 1.53178 * 109.03508 * 303.02472 * 22 21 19 24 24 C 1.53091 * 109.16483 * 56.97404 * 23 22 21 25 25 O 1.42899 * 109.49011 * 294.97184 * 19 18 17 26 26 C 1.40071 * 120.19882 * 0.29497 * 12 11 10 27 27 C 1.36298 * 120.09980 * 359.44583 * 26 12 11 28 28 H 0.97001 * 119.99996 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.05451 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.94703 * 180.02562 * 11 10 9 31 31 H 1.08998 * 109.47080 * 59.99672 * 16 15 13 32 32 H 1.09003 * 109.46841 * 300.00291 * 16 15 13 33 33 H 1.08997 * 109.46958 * 304.99450 * 17 16 15 34 34 H 1.09002 * 109.46902 * 184.99594 * 17 16 15 35 35 H 1.09002 * 109.52475 * 297.50827 * 21 19 18 36 36 H 1.08998 * 109.52364 * 57.63271 * 21 19 18 37 37 H 1.09006 * 109.53953 * 62.88143 * 22 21 19 38 38 H 1.08990 * 109.54460 * 183.15088 * 22 21 19 39 39 H 1.08999 * 109.52192 * 176.88154 * 23 22 21 40 40 H 1.09004 * 109.51837 * 297.00442 * 23 22 21 41 41 H 1.08997 * 109.48089 * 62.37942 * 24 23 22 42 42 H 1.09004 * 109.47817 * 182.39450 * 24 23 22 43 43 H 1.07992 * 119.94804 * 179.70458 * 26 12 11 44 44 H 1.07995 * 120.05431 * 180.29832 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4878 2.0464 -1.4001 5 1 1.4377 2.6527 0.7000 6 1 3.5379 1.4402 0.7000 7 6 2.0076 -1.2146 0.0005 8 1 3.0484 -1.2371 0.2878 9 6 1.3533 -2.4070 -0.3744 10 6 1.8266 -3.6495 0.0922 11 6 1.1911 -4.7989 -0.2722 12 6 0.0689 -4.7463 -1.1086 13 6 -0.6158 -5.9929 -1.4997 14 8 -0.2064 -7.0633 -1.0959 15 8 -1.6955 -5.9447 -2.3048 16 6 -2.3190 -7.2103 -2.6480 17 6 -3.5198 -6.9562 -3.5615 18 8 -3.0675 -6.4091 -4.8017 19 6 -4.1161 -6.1338 -5.7325 20 1 -4.8555 -5.4834 -5.2651 21 6 -3.5341 -5.4406 -6.9671 22 6 -4.6537 -5.2030 -7.9851 23 6 -5.3110 -6.5437 -8.3269 24 6 -5.8245 -7.1943 -7.0397 25 8 -4.7391 -7.3586 -6.1248 26 6 -0.4018 -3.5139 -1.5794 27 6 0.2242 -2.3591 -1.2160 28 1 -0.4850 0.8401 0.0004 29 1 2.6911 -3.6909 0.7382 30 1 1.5530 -5.7516 0.0853 31 1 -2.6540 -7.7088 -1.7384 32 1 -1.5968 -7.8430 -3.1641 33 1 -4.1997 -6.2531 -3.0806 34 1 -4.0402 -7.8958 -3.7472 35 1 -3.0973 -4.4852 -6.6764 36 1 -2.7650 -6.0726 -7.4111 37 1 -5.3979 -4.5304 -7.5583 38 1 -4.2364 -4.7604 -8.8894 39 1 -6.1451 -6.3771 -9.0086 40 1 -4.5789 -7.1981 -8.8000 41 1 -6.5862 -6.5578 -6.5895 42 1 -6.2554 -8.1683 -7.2716 43 1 -1.2646 -3.4785 -2.2280 44 1 -0.1422 -1.4089 -1.5755 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792066758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:02 Heat of formation + Delta-G solvation = -180.237740 kcal Electronic energy + Delta-G solvation = -26011.382449 eV Core-core repulsion = 22085.783799 eV Total energy + Delta-G solvation = -3925.598650 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.91828 -39.47410 -37.55398 -37.06056 -35.45861 -33.98579 -33.92617 -31.32333 -30.35614 -29.48428 -29.35486 -26.14360 -25.02296 -23.52086 -23.06479 -21.86204 -20.92503 -20.57140 -19.91494 -17.71407 -17.54390 -17.11796 -16.68577 -16.37257 -15.92675 -15.50557 -15.33431 -15.03232 -14.58135 -14.21239 -14.06785 -13.86887 -13.36921 -13.17068 -13.09096 -12.98469 -12.67806 -12.36032 -12.09459 -11.95917 -11.57090 -11.52475 -11.47369 -11.36400 -11.30949 -11.16224 -10.97789 -10.84931 -10.68409 -10.11539 -10.09957 -9.96233 -9.73448 -9.58951 -9.40549 -9.34109 -7.72873 -7.61582 -7.08043 -4.65807 2.09104 2.87964 2.93661 2.96446 3.05446 3.10414 3.43411 3.66619 3.71841 3.74112 4.45324 4.49048 4.49674 4.59483 4.70205 4.77767 5.04150 5.05733 5.16536 5.24866 5.37313 5.38368 5.44666 5.51774 5.55187 5.61023 5.66036 5.72668 5.80810 5.97613 6.11311 6.24087 6.29495 6.76179 6.82229 6.84818 7.01478 7.04929 7.09290 7.16343 7.43885 7.69954 7.80732 7.86399 8.02726 8.37535 8.58499 8.71765 8.79745 9.83267 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.014572 B = 0.002553 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.007203 B =10966.780258 C =12541.121679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.436 4.436 8 H 0.087 0.913 9 C 0.131 3.869 10 C -0.239 4.239 11 C -0.019 4.019 12 C -0.273 4.273 13 C 0.515 3.485 14 O -0.555 6.555 15 O -0.353 6.353 16 C 0.070 3.930 17 C 0.066 3.934 18 O -0.354 6.354 19 C 0.255 3.745 20 H 0.054 0.946 21 C -0.142 4.142 22 C -0.120 4.120 23 C -0.160 4.160 24 C 0.072 3.928 25 O -0.409 6.409 26 C -0.041 4.041 27 C -0.185 4.185 28 H 0.288 0.712 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.051 0.949 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.814 -5.838 -12.703 18.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.149 4.149 3 Si 0.739 3.261 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.463 4.463 8 H 0.105 0.895 9 C 0.128 3.872 10 C -0.259 4.259 11 C -0.037 4.037 12 C -0.275 4.275 13 C 0.367 3.633 14 O -0.449 6.449 15 O -0.271 6.271 16 C -0.005 4.005 17 C -0.010 4.010 18 O -0.273 6.273 19 C 0.160 3.840 20 H 0.072 0.928 21 C -0.180 4.180 22 C -0.158 4.158 23 C -0.198 4.198 24 C -0.004 4.004 25 O -0.330 6.330 26 C -0.060 4.060 27 C -0.205 4.205 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.114 0.886 43 H 0.120 0.880 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.678 -6.128 -12.545 18.202 hybrid contribution -0.114 0.739 0.023 0.748 sum -11.792 -5.389 -12.522 18.025 Atomic orbital electron populations 1.69747 1.07979 1.30265 1.30740 1.26153 0.94848 1.02045 0.91892 0.86170 0.80556 0.79617 0.79734 1.18834 1.19948 1.18209 1.19920 0.98485 0.91159 1.36715 0.89492 1.17855 0.90317 0.92184 0.86869 1.20682 1.04699 0.92459 1.08035 1.20355 0.92534 0.97397 0.93436 1.18228 1.04350 0.89340 1.15624 1.21576 0.77087 0.90173 0.74439 1.90689 1.66196 1.32198 1.55838 1.86641 1.43187 1.34013 1.63264 1.22858 0.94409 0.85555 0.97659 1.22588 0.95772 0.98975 0.83665 1.88147 1.31451 1.83086 1.24664 1.22960 0.87386 0.84548 0.89153 0.92823 1.22015 0.99163 1.02107 0.94681 1.21592 0.97718 0.97145 0.99317 1.22250 1.01541 0.97604 0.98394 1.22485 0.87918 1.01531 0.88489 1.87793 1.48881 1.32605 1.63765 1.20650 0.97140 0.91898 0.96316 1.21009 1.00077 0.97062 1.02308 0.90051 0.88084 0.87959 0.90123 0.90875 0.92118 0.90453 0.89627 0.90060 0.91529 0.90650 0.90600 0.90740 0.93093 0.88642 0.88013 0.86061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.25 10.95 55.56 0.61 -17.64 16 2 C 0.07 1.68 5.13 -17.31 -0.09 1.60 16 3 Si 0.92 17.08 29.60 -169.99 -5.03 12.04 16 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 5 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 6 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 7 C -0.44 -10.75 9.04 -37.75 -0.34 -11.10 16 8 H 0.09 2.04 7.91 -52.49 -0.42 1.62 16 9 C 0.13 3.36 5.58 -106.80 -0.60 2.76 16 10 C -0.24 -5.80 9.73 -39.27 -0.38 -6.19 16 11 C -0.02 -0.44 9.52 -39.59 -0.38 -0.82 16 12 C -0.27 -6.59 5.89 -104.75 -0.62 -7.21 16 13 C 0.51 11.82 7.89 34.51 0.27 12.09 16 14 O -0.55 -13.38 16.11 -19.27 -0.31 -13.69 16 15 O -0.35 -7.16 9.42 -43.48 -0.41 -7.57 16 16 C 0.07 1.12 5.86 37.16 0.22 1.34 16 17 C 0.07 0.89 6.19 37.16 0.23 1.12 16 18 O -0.35 -5.35 10.24 -62.04 -0.64 -5.98 16 19 C 0.26 3.05 3.20 37.20 0.12 3.17 16 20 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 21 C -0.14 -1.47 5.79 -26.59 -0.15 -1.62 16 22 C -0.12 -0.90 6.03 -26.55 -0.16 -1.06 16 23 C -0.16 -1.09 6.14 -26.59 -0.16 -1.25 16 24 C 0.07 0.56 6.84 37.20 0.25 0.82 16 25 O -0.41 -4.73 10.03 -59.04 -0.59 -5.33 16 26 C -0.04 -0.98 9.55 -39.59 -0.38 -1.36 16 27 C -0.19 -4.67 8.63 -39.27 -0.34 -5.01 16 28 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 29 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 30 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.89 7.74 -51.93 -0.40 0.49 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.10 2.25 7.59 -52.49 -0.40 1.85 16 44 H 0.12 3.07 6.15 -52.49 -0.32 2.75 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -29.36 369.74 -9.87 -39.23 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -6.57 Total: 6.09 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -2.50 Total: -12.72 kcal Atomic # 7 Polarization: -18.25 SS G_CDS: 0.61 Total: -17.64 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -1.95 Total: -32.58 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.04 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.36 -9.87 -39.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792066758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.005 kcal (2) G-P(sol) polarization free energy of solvation -29.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds