Wall clock time and date at job start Tue Mar 31 2020 13:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86791 * 119.99906 * 2 1 4 4 H 1.48501 * 109.47186 * 270.00168 * 3 2 1 5 5 H 1.48506 * 109.47179 * 29.99786 * 3 2 1 6 6 H 1.48499 * 109.47351 * 150.00175 * 3 2 1 7 7 C 1.40245 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00124 * 197.88574 * 7 2 1 9 9 C 1.41092 * 119.99753 * 17.89685 * 7 2 1 10 10 C 1.40908 * 120.09415 * 204.64999 * 9 7 2 11 11 C 1.36301 * 119.89450 * 179.97438 * 10 9 7 12 12 C 1.40064 * 120.10395 * 359.97438 * 11 10 9 13 13 C 1.47506 * 119.90074 * 180.02562 * 12 11 10 14 14 O 1.21506 * 120.00026 * 0.02562 * 13 12 11 15 15 O 1.34774 * 119.99950 * 180.02562 * 13 12 11 16 16 C 1.45204 * 117.00154 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47177 * 179.97438 * 16 15 13 18 18 O 1.42899 * 109.47355 * 65.00058 * 17 16 15 19 19 C 1.42895 * 114.00345 * 179.97438 * 18 17 16 20 20 H 1.08999 * 109.47814 * 54.99885 * 19 18 17 21 21 C 1.53086 * 109.48307 * 175.02153 * 19 18 17 22 22 C 1.53179 * 109.16721 * 177.60231 * 21 19 18 23 23 C 1.53178 * 109.03508 * 303.02472 * 22 21 19 24 24 C 1.53091 * 109.16483 * 56.97404 * 23 22 21 25 25 O 1.42899 * 109.49011 * 294.97184 * 19 18 17 26 26 C 1.40071 * 120.19882 * 0.29497 * 12 11 10 27 27 C 1.36298 * 120.09980 * 359.44583 * 26 12 11 28 28 H 0.97001 * 119.99996 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.05451 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.94703 * 180.02562 * 11 10 9 31 31 H 1.08998 * 109.47080 * 59.99672 * 16 15 13 32 32 H 1.09003 * 109.46841 * 300.00291 * 16 15 13 33 33 H 1.08997 * 109.46958 * 304.99450 * 17 16 15 34 34 H 1.09002 * 109.46902 * 184.99594 * 17 16 15 35 35 H 1.09002 * 109.52475 * 297.50827 * 21 19 18 36 36 H 1.08998 * 109.52364 * 57.63271 * 21 19 18 37 37 H 1.09006 * 109.53953 * 62.88143 * 22 21 19 38 38 H 1.08990 * 109.54460 * 183.15088 * 22 21 19 39 39 H 1.08999 * 109.52192 * 176.88154 * 23 22 21 40 40 H 1.09004 * 109.51837 * 297.00442 * 23 22 21 41 41 H 1.08997 * 109.48089 * 62.37942 * 24 23 22 42 42 H 1.09004 * 109.47817 * 182.39450 * 24 23 22 43 43 H 1.07992 * 119.94804 * 179.70458 * 26 12 11 44 44 H 1.07995 * 120.05431 * 180.29832 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4878 2.0464 -1.4001 5 1 1.4377 2.6527 0.7000 6 1 3.5379 1.4402 0.7000 7 6 2.0076 -1.2146 0.0005 8 1 3.0484 -1.2371 0.2878 9 6 1.3533 -2.4070 -0.3744 10 6 1.8266 -3.6495 0.0922 11 6 1.1911 -4.7989 -0.2722 12 6 0.0689 -4.7463 -1.1086 13 6 -0.6158 -5.9929 -1.4997 14 8 -0.2064 -7.0633 -1.0959 15 8 -1.6955 -5.9447 -2.3048 16 6 -2.3190 -7.2103 -2.6480 17 6 -3.5198 -6.9562 -3.5615 18 8 -3.0675 -6.4091 -4.8017 19 6 -4.1161 -6.1338 -5.7325 20 1 -4.8555 -5.4834 -5.2651 21 6 -3.5341 -5.4406 -6.9671 22 6 -4.6537 -5.2030 -7.9851 23 6 -5.3110 -6.5437 -8.3269 24 6 -5.8245 -7.1943 -7.0397 25 8 -4.7391 -7.3586 -6.1248 26 6 -0.4018 -3.5139 -1.5794 27 6 0.2242 -2.3591 -1.2160 28 1 -0.4850 0.8401 0.0004 29 1 2.6911 -3.6909 0.7382 30 1 1.5530 -5.7516 0.0853 31 1 -2.6540 -7.7088 -1.7384 32 1 -1.5968 -7.8430 -3.1641 33 1 -4.1997 -6.2531 -3.0806 34 1 -4.0402 -7.8958 -3.7472 35 1 -3.0973 -4.4852 -6.6764 36 1 -2.7650 -6.0726 -7.4111 37 1 -5.3979 -4.5304 -7.5583 38 1 -4.2364 -4.7604 -8.8894 39 1 -6.1451 -6.3771 -9.0086 40 1 -4.5789 -7.1981 -8.8000 41 1 -6.5862 -6.5578 -6.5895 42 1 -6.2554 -8.1683 -7.2716 43 1 -1.2646 -3.4785 -2.2280 44 1 -0.1422 -1.4089 -1.5755 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792066758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:01 Heat of formation + Delta-G solvation = -194.307241 kcal Electronic energy + Delta-G solvation = -26011.992548 eV Core-core repulsion = 22085.783799 eV Total energy + Delta-G solvation = -3926.208749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.27495 -40.65378 -39.29370 -38.22391 -37.07914 -35.74562 -34.69251 -32.53948 -31.88067 -31.37523 -30.45623 -27.94852 -25.77926 -24.60326 -24.24954 -23.34120 -22.80242 -21.68691 -21.25724 -19.40202 -18.74786 -18.61165 -17.96975 -17.62564 -17.21200 -17.12393 -16.61565 -15.85303 -15.75167 -15.47905 -15.36416 -15.09725 -14.92623 -14.59118 -14.28039 -14.14021 -13.92809 -13.73053 -13.62380 -13.54873 -13.20757 -12.89323 -12.69849 -12.63774 -12.39791 -12.33147 -12.19691 -11.89417 -11.80217 -11.69640 -11.50143 -11.42028 -11.23638 -11.13227 -10.89008 -10.49995 -9.63211 -9.53132 -8.84554 -6.54898 0.24379 1.13657 1.37268 1.42146 1.54929 1.87908 1.90083 2.15563 2.22925 2.68296 2.90624 3.62755 3.74976 3.77213 3.87439 3.97550 3.98999 4.04341 4.09228 4.11967 4.35197 4.36185 4.42008 4.43627 4.51212 4.61499 4.66046 4.77400 4.83477 4.92742 4.98695 5.00472 5.07887 5.09189 5.12232 5.22850 5.32242 5.42577 5.56081 5.81799 5.91329 5.96665 5.97901 6.14965 6.23017 6.49318 6.70337 6.82287 7.02560 8.10297 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.014572 B = 0.002553 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.007203 B =10966.780258 C =12541.121679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.035 3.965 3 Si 0.992 3.008 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.254 1.254 7 C -0.458 4.458 8 H 0.093 0.907 9 C 0.104 3.896 10 C -0.250 4.250 11 C -0.024 4.024 12 C -0.292 4.292 13 C 0.518 3.482 14 O -0.571 6.571 15 O -0.358 6.358 16 C 0.063 3.937 17 C 0.072 3.928 18 O -0.386 6.386 19 C 0.251 3.749 20 H 0.065 0.935 21 C -0.143 4.143 22 C -0.117 4.117 23 C -0.157 4.157 24 C 0.063 3.937 25 O -0.428 6.428 26 C -0.038 4.038 27 C -0.203 4.203 28 H 0.300 0.700 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.840 -4.955 -13.473 19.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.185 4.185 3 Si 0.811 3.189 4 H -0.184 1.184 5 H -0.188 1.188 6 H -0.177 1.177 7 C -0.484 4.484 8 H 0.111 0.889 9 C 0.101 3.899 10 C -0.269 4.269 11 C -0.042 4.042 12 C -0.294 4.294 13 C 0.371 3.629 14 O -0.467 6.467 15 O -0.275 6.275 16 C -0.011 4.011 17 C -0.004 4.004 18 O -0.306 6.306 19 C 0.156 3.844 20 H 0.082 0.918 21 C -0.181 4.181 22 C -0.154 4.154 23 C -0.194 4.194 24 C -0.013 4.013 25 O -0.351 6.351 26 C -0.057 4.057 27 C -0.222 4.222 28 H 0.111 0.889 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.119 0.881 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.129 0.871 43 H 0.132 0.868 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.737 -5.265 -13.331 19.174 hybrid contribution 0.111 0.419 0.225 0.488 sum -12.625 -4.846 -13.106 18.832 Atomic orbital electron populations 1.69769 1.09459 1.32003 1.30087 1.27054 0.95566 1.05176 0.90741 0.85036 0.79141 0.74796 0.79891 1.18353 1.18850 1.17736 1.20247 0.98978 0.91940 1.37253 0.88859 1.18208 0.90945 0.93218 0.87554 1.20868 1.05312 0.92273 1.08421 1.20516 0.92582 0.97732 0.93382 1.18461 1.04837 0.90091 1.16008 1.21357 0.77567 0.89431 0.74525 1.90666 1.66890 1.32553 1.56619 1.86608 1.42173 1.36421 1.62268 1.23226 0.94974 0.83911 0.98944 1.22602 0.94437 1.00349 0.82967 1.88100 1.33513 1.83448 1.25562 1.23118 0.87171 0.84993 0.89115 0.91789 1.22059 0.99941 1.01188 0.94928 1.21612 0.96991 0.97964 0.98849 1.22240 1.02090 0.96767 0.98319 1.22789 0.87226 1.02954 0.88323 1.87758 1.50045 1.32473 1.64791 1.20752 0.97253 0.91586 0.96109 1.21012 1.00820 0.97139 1.03215 0.88890 0.86726 0.87048 0.88597 0.91535 0.91084 0.88242 0.90370 0.91496 0.90476 0.89598 0.88135 0.91577 0.91778 0.87111 0.86757 0.86751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.55 10.95 21.88 0.24 -37.31 16 2 C 0.03 1.59 5.13 85.36 0.44 2.03 16 3 Si 0.99 33.92 29.60 68.60 2.03 35.95 16 4 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 5 H -0.26 -8.54 7.11 99.48 0.71 -7.84 16 6 H -0.25 -8.45 7.11 99.48 0.71 -7.74 16 7 C -0.46 -22.67 9.04 23.46 0.21 -22.45 16 8 H 0.09 4.35 7.91 -2.91 -0.02 4.33 16 9 C 0.10 5.42 5.58 -21.27 -0.12 5.30 16 10 C -0.25 -12.27 9.73 22.47 0.22 -12.05 16 11 C -0.02 -1.14 9.52 22.26 0.21 -0.93 16 12 C -0.29 -14.27 5.89 -19.95 -0.12 -14.39 16 13 C 0.52 23.95 7.89 70.27 0.55 24.51 16 14 O -0.57 -27.64 16.11 19.81 0.32 -27.32 16 15 O -0.36 -14.49 9.42 -54.19 -0.51 -15.00 16 16 C 0.06 2.00 5.86 71.98 0.42 2.42 16 17 C 0.07 1.87 6.19 71.98 0.45 2.32 16 18 O -0.39 -11.58 10.24 -123.34 -1.26 -12.84 16 19 C 0.25 5.83 3.20 72.01 0.23 6.06 16 20 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 21 C -0.14 -2.91 5.79 30.68 0.18 -2.74 16 22 C -0.12 -1.56 6.03 30.71 0.19 -1.37 16 23 C -0.16 -1.80 6.14 30.68 0.19 -1.61 16 24 C 0.06 0.84 6.84 72.01 0.49 1.34 16 25 O -0.43 -9.40 10.03 -126.21 -1.27 -10.67 16 26 C -0.04 -1.86 9.55 22.26 0.21 -1.65 16 27 C -0.20 -10.42 8.63 22.47 0.19 -10.22 16 28 H 0.30 12.58 8.29 -92.71 -0.77 11.81 16 29 H 0.11 5.15 8.06 -2.91 -0.02 5.13 16 30 H 0.11 5.09 7.63 -2.91 -0.02 5.07 16 31 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.10 2.14 7.74 -2.39 -0.02 2.12 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.11 5.12 7.59 -2.91 -0.02 5.10 16 44 H 0.11 5.93 6.15 -2.91 -0.02 5.91 16 Total: -1.00 -63.08 369.74 4.49 -58.60 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: 0.99 Total: 32.03 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: 3.95 Total: -23.44 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.24 Total: -37.31 kcal Atomic # 8 Polarization: -63.11 SS G_CDS: -2.72 Total: -65.83 kcal Atomic # 14 Polarization: 33.92 SS G_CDS: 2.03 Total: 35.95 kcal Total: -63.08 4.49 -58.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792066758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.711 kcal (2) G-P(sol) polarization free energy of solvation -63.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds