Wall clock time and date at job start Tue Mar 31 2020 12:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47100 * 2 1 4 4 C 1.50698 * 109.47432 * 239.99514 * 2 1 3 5 5 O 1.21304 * 120.00498 * 245.98741 * 4 2 1 6 6 N 1.34777 * 119.99900 * 65.98011 * 4 2 1 7 7 C 1.40588 * 120.00466 * 180.02562 * 6 4 2 8 8 C 1.40649 * 126.07850 * 0.04906 * 7 6 4 9 9 N 1.30912 * 108.38614 * 179.70234 * 8 7 6 10 10 N 1.40064 * 108.40591 * 0.40792 * 9 8 7 11 11 C 1.37328 * 126.06964 * 179.85763 * 10 9 8 12 12 H 1.07999 * 119.99751 * 179.68780 * 11 10 9 13 13 C 1.38985 * 119.99724 * 359.40545 * 11 10 9 14 14 N 1.31288 * 120.00440 * 0.27867 * 13 11 10 15 15 Si 1.86799 * 119.99783 * 180.27794 * 13 11 10 16 16 H 1.48498 * 109.47400 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47116 * 120.00144 * 15 13 11 18 18 H 1.48499 * 109.47403 * 240.00138 * 15 13 11 19 19 C 1.35681 * 126.08431 * 180.02562 * 7 6 4 20 20 N 1.46901 * 109.47129 * 119.99518 * 2 1 3 21 21 C 1.46897 * 111.00324 * 285.57569 * 20 2 1 22 22 C 1.46908 * 110.99913 * 49.53079 * 20 2 1 23 23 C 1.53000 * 109.47183 * 162.86012 * 22 20 2 24 24 F 1.39909 * 109.46835 * 66.05530 * 23 22 20 25 25 F 1.39898 * 109.47178 * 186.05123 * 23 22 20 26 26 F 1.39899 * 109.47369 * 306.05601 * 23 22 20 27 27 H 1.08997 * 109.47377 * 60.00376 * 1 2 3 28 28 H 1.09003 * 109.47529 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47105 * 299.99981 * 1 2 3 30 30 H 0.97002 * 119.99917 * 0.02562 * 6 4 2 31 31 H 1.08000 * 125.80850 * 359.95694 * 8 7 6 32 32 H 0.96999 * 120.00627 * 179.97438 * 14 13 11 33 33 H 1.07999 * 126.24971 * 0.06712 * 19 7 6 34 34 H 1.09002 * 109.47157 * 68.69221 * 21 20 2 35 35 H 1.09007 * 109.47290 * 188.69124 * 21 20 2 36 36 H 1.08992 * 109.46948 * 308.69477 * 21 20 2 37 37 H 1.09001 * 109.47225 * 282.86470 * 22 20 2 38 38 H 1.08998 * 109.47088 * 42.86253 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.6376 -1.7562 -1.1224 6 7 1.8091 -0.1841 -2.4509 7 6 2.2773 -0.8471 -3.5988 8 6 2.9883 -2.0604 -3.6224 9 7 3.2458 -2.3639 -4.8696 10 7 2.7198 -1.3560 -5.6877 11 6 2.7873 -1.3098 -7.0585 12 1 2.3414 -0.4844 -7.5936 13 6 3.4346 -2.3222 -7.7568 14 7 3.9767 -3.3256 -7.1064 15 14 3.5332 -2.2554 -9.6210 16 1 2.8496 -1.0309 -10.1094 17 1 4.9574 -2.2275 -10.0407 18 1 2.8715 -3.4545 -10.1951 19 6 2.1232 -0.4307 -4.8809 20 7 2.0196 -0.6924 1.1995 21 6 1.8480 0.1422 2.3961 22 6 1.3559 -1.9925 1.3647 23 6 2.1616 -2.8566 2.3369 24 9 2.1255 -2.2815 3.6118 25 9 1.6079 -4.1403 2.3886 26 9 3.4879 -2.9380 1.8993 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.3253 0.6522 -2.5373 31 1 3.2701 -2.6446 -2.7589 32 1 4.4281 -4.0324 -7.5938 33 1 1.6206 0.4690 -5.2040 34 1 0.7859 0.2422 2.6200 35 1 2.3549 -0.3249 3.2406 36 1 2.2757 1.1283 2.2157 37 1 0.3517 -1.8401 1.7605 38 1 1.2935 -2.4940 0.3990 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793289016.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:08 Heat of formation + Delta-G solvation = -88.087322 kcal Electronic energy + Delta-G solvation = -27451.659051 eV Core-core repulsion = 22916.952011 eV Total energy + Delta-G solvation = -4534.707041 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.99500 -47.60852 -47.33165 -40.23345 -39.19643 -37.19169 -34.23015 -33.22719 -31.49325 -30.19118 -29.46703 -27.70358 -26.02764 -24.98325 -23.94049 -22.17453 -20.92945 -19.90842 -19.37642 -18.47489 -18.40876 -17.72656 -17.32013 -16.64735 -15.73617 -15.46801 -15.06856 -14.85818 -14.71540 -14.48054 -14.34955 -14.22947 -13.99785 -13.88254 -13.59866 -13.55241 -13.52384 -13.19086 -12.93530 -12.63667 -12.43655 -12.04147 -12.01383 -11.72295 -11.64795 -11.47294 -11.39245 -11.26436 -10.91805 -10.50923 -10.13654 -9.20314 -9.16601 -8.80815 -8.62191 -8.05230 -6.69993 -6.55230 -4.22523 2.70450 2.80559 3.01814 3.04957 3.11200 3.21990 3.63492 3.68946 3.85474 3.90179 4.10960 4.41055 4.47222 4.64132 4.70918 4.79273 4.93639 4.98606 5.02757 5.13226 5.19061 5.33431 5.41275 5.45295 5.68450 5.75954 6.23519 6.40867 6.46457 6.60420 6.91034 6.96366 7.12998 7.24705 7.86594 8.17666 8.28684 8.63916 8.85402 9.38411 9.68032 10.40769 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.025613 B = 0.002886 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.913292 B = 9699.297545 C =10457.252551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.071 3.929 3 H 0.113 0.887 4 C 0.500 3.500 5 O -0.516 6.516 6 N -0.623 5.623 7 C -0.060 4.060 8 C -0.032 4.032 9 N -0.260 5.260 10 N -0.143 5.143 11 C -0.324 4.324 12 H 0.116 0.884 13 C 0.046 3.954 14 N -0.769 5.769 15 Si 0.934 3.066 16 H -0.263 1.263 17 H -0.274 1.274 18 H -0.274 1.274 19 C -0.084 4.084 20 N -0.512 5.512 21 C 0.007 3.993 22 C 0.009 3.991 23 C 0.460 3.540 24 F -0.191 7.191 25 F -0.186 7.186 26 F -0.164 7.164 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.395 0.605 31 H 0.176 0.824 32 H 0.274 0.726 33 H 0.144 0.856 34 H 0.034 0.966 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.266 7.916 15.608 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.041 4.041 3 H 0.131 0.869 4 C 0.285 3.715 5 O -0.391 6.391 6 N -0.266 5.266 7 C -0.165 4.165 8 C -0.207 4.207 9 N -0.092 5.092 10 N 0.089 4.911 11 C -0.456 4.456 12 H 0.134 0.866 13 C -0.171 4.171 14 N -0.396 5.396 15 Si 0.758 3.242 16 H -0.187 1.187 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.235 4.235 20 N -0.235 5.235 21 C -0.140 4.140 22 C -0.121 4.121 23 C 0.405 3.595 24 F -0.173 7.173 25 F -0.168 7.168 26 F -0.145 7.145 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.228 0.772 31 H 0.193 0.807 32 H 0.085 0.915 33 H 0.162 0.838 34 H 0.053 0.947 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.613 5.992 14.824 17.303 hybrid contribution -1.345 1.225 -0.045 1.820 sum -7.958 7.217 14.779 18.271 Atomic orbital electron populations 1.22464 0.94886 1.03511 1.03554 1.21643 0.94297 0.98877 0.89254 0.86950 1.20059 0.81488 0.86362 0.83594 1.90612 1.40137 1.22875 1.85499 1.42460 1.55214 1.24729 1.04172 1.17250 1.14988 0.99628 0.84647 1.24119 1.03577 0.96621 0.96413 1.78265 1.21765 1.10333 0.98794 1.44556 1.29719 1.11588 1.05206 1.19908 1.38254 1.10295 0.77136 0.86619 1.25635 0.95328 0.94866 1.01271 1.70221 1.25764 1.07298 1.36295 0.85773 0.78688 0.79030 0.80693 1.18723 1.19919 1.19925 1.21248 1.12764 1.00076 0.89452 1.61496 1.56939 1.02169 1.02903 1.22815 1.00358 0.98252 0.92578 1.23368 0.95011 0.92135 1.01590 1.20441 0.79923 0.79021 0.80135 1.93096 1.96551 1.84038 1.43572 1.93174 1.85512 1.41552 1.96540 1.93248 1.36084 1.96113 1.89062 0.90651 0.91479 0.91352 0.77208 0.80711 0.91508 0.83804 0.94743 0.89665 0.90517 0.90503 0.84897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.49 8.40 37.16 0.31 -1.18 16 2 C 0.07 0.76 2.70 -68.87 -0.19 0.58 16 3 H 0.11 0.98 7.86 -51.93 -0.41 0.57 16 4 C 0.50 8.01 6.74 -10.99 -0.07 7.94 16 5 O -0.52 -10.44 11.75 5.54 0.07 -10.37 16 6 N -0.62 -10.25 5.44 -10.00 -0.05 -10.30 16 7 C -0.06 -1.33 6.90 -83.84 -0.58 -1.91 16 8 C -0.03 -0.83 10.85 -17.03 -0.18 -1.01 16 9 N -0.26 -7.55 10.40 30.80 0.32 -7.23 16 10 N -0.14 -3.89 3.74 -11.41 -0.04 -3.94 16 11 C -0.32 -8.52 10.25 -14.81 -0.15 -8.67 16 12 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 13 C 0.05 1.19 5.50 -17.51 -0.10 1.09 16 14 N -0.77 -21.52 11.81 55.49 0.66 -20.87 16 15 Si 0.93 18.87 29.55 -169.99 -5.02 13.85 16 16 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 17 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 18 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 19 C -0.08 -1.94 11.49 -16.39 -0.19 -2.13 16 20 N -0.51 -5.90 4.18 -236.28 -0.99 -6.89 16 21 C 0.01 0.06 8.84 60.06 0.53 0.59 16 22 C 0.01 0.10 3.33 -3.82 -0.01 0.09 16 23 C 0.46 5.91 3.25 37.16 0.12 6.03 16 24 F -0.19 -2.22 14.63 2.25 0.03 -2.19 16 25 F -0.19 -2.46 17.32 2.25 0.04 -2.42 16 26 F -0.16 -2.60 17.13 2.25 0.04 -2.56 16 27 H 0.07 0.54 8.00 -51.93 -0.42 0.13 16 28 H 0.07 0.60 6.62 -51.93 -0.34 0.26 16 29 H 0.07 0.42 7.06 -51.93 -0.37 0.06 16 30 H 0.40 4.85 8.69 -40.82 -0.35 4.49 16 31 H 0.18 4.55 5.92 -52.49 -0.31 4.24 16 32 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.14 2.74 8.06 -52.49 -0.42 2.32 16 34 H 0.03 0.23 7.03 -51.93 -0.37 -0.13 16 35 H 0.08 0.78 5.85 -51.93 -0.30 0.47 16 36 H 0.08 0.55 7.91 -51.93 -0.41 0.14 16 37 H 0.08 0.67 7.13 -51.93 -0.37 0.30 16 38 H 0.13 1.84 5.96 -51.93 -0.31 1.53 16 LS Contribution 327.74 15.07 4.94 4.94 Total: -1.00 -33.60 327.74 -4.45 -38.05 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -3.93 Total: 8.51 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -0.51 Total: 1.42 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.11 Total: -49.23 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.07 Total: -10.37 kcal Atomic # 9 Polarization: -7.27 SS G_CDS: 0.11 Total: -7.16 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.85 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.60 -4.45 -38.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793289016.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.035 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds