Wall clock time and date at job start Tue Mar 31 2020 12:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47100 * 2 1 4 4 C 1.50698 * 109.47432 * 239.99514 * 2 1 3 5 5 O 1.21304 * 120.00498 * 245.98741 * 4 2 1 6 6 N 1.34777 * 119.99900 * 65.98011 * 4 2 1 7 7 C 1.40588 * 120.00466 * 180.02562 * 6 4 2 8 8 C 1.40649 * 126.07850 * 0.04906 * 7 6 4 9 9 N 1.30912 * 108.38614 * 179.70234 * 8 7 6 10 10 N 1.40064 * 108.40591 * 0.40792 * 9 8 7 11 11 C 1.37328 * 126.06964 * 179.85763 * 10 9 8 12 12 H 1.07999 * 119.99751 * 179.68780 * 11 10 9 13 13 C 1.38985 * 119.99724 * 359.40545 * 11 10 9 14 14 N 1.31288 * 120.00440 * 0.27867 * 13 11 10 15 15 Si 1.86799 * 119.99783 * 180.27794 * 13 11 10 16 16 H 1.48498 * 109.47400 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47116 * 120.00144 * 15 13 11 18 18 H 1.48499 * 109.47403 * 240.00138 * 15 13 11 19 19 C 1.35681 * 126.08431 * 180.02562 * 7 6 4 20 20 N 1.46901 * 109.47129 * 119.99518 * 2 1 3 21 21 C 1.46897 * 111.00324 * 285.57569 * 20 2 1 22 22 C 1.46908 * 110.99913 * 49.53079 * 20 2 1 23 23 C 1.53000 * 109.47183 * 162.86012 * 22 20 2 24 24 F 1.39909 * 109.46835 * 66.05530 * 23 22 20 25 25 F 1.39898 * 109.47178 * 186.05123 * 23 22 20 26 26 F 1.39899 * 109.47369 * 306.05601 * 23 22 20 27 27 H 1.08997 * 109.47377 * 60.00376 * 1 2 3 28 28 H 1.09003 * 109.47529 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47105 * 299.99981 * 1 2 3 30 30 H 0.97002 * 119.99917 * 0.02562 * 6 4 2 31 31 H 1.08000 * 125.80850 * 359.95694 * 8 7 6 32 32 H 0.96999 * 120.00627 * 179.97438 * 14 13 11 33 33 H 1.07999 * 126.24971 * 0.06712 * 19 7 6 34 34 H 1.09002 * 109.47157 * 68.69221 * 21 20 2 35 35 H 1.09007 * 109.47290 * 188.69124 * 21 20 2 36 36 H 1.08992 * 109.46948 * 308.69477 * 21 20 2 37 37 H 1.09001 * 109.47225 * 282.86470 * 22 20 2 38 38 H 1.08998 * 109.47088 * 42.86253 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.6376 -1.7562 -1.1224 6 7 1.8091 -0.1841 -2.4509 7 6 2.2773 -0.8471 -3.5988 8 6 2.9883 -2.0604 -3.6224 9 7 3.2458 -2.3639 -4.8696 10 7 2.7198 -1.3560 -5.6877 11 6 2.7873 -1.3098 -7.0585 12 1 2.3414 -0.4844 -7.5936 13 6 3.4346 -2.3222 -7.7568 14 7 3.9767 -3.3256 -7.1064 15 14 3.5332 -2.2554 -9.6210 16 1 2.8496 -1.0309 -10.1094 17 1 4.9574 -2.2275 -10.0407 18 1 2.8715 -3.4545 -10.1951 19 6 2.1232 -0.4307 -4.8809 20 7 2.0196 -0.6924 1.1995 21 6 1.8480 0.1422 2.3961 22 6 1.3559 -1.9925 1.3647 23 6 2.1616 -2.8566 2.3369 24 9 2.1255 -2.2815 3.6118 25 9 1.6079 -4.1403 2.3886 26 9 3.4879 -2.9380 1.8993 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.3253 0.6522 -2.5373 31 1 3.2701 -2.6446 -2.7589 32 1 4.4281 -4.0324 -7.5938 33 1 1.6206 0.4690 -5.2040 34 1 0.7859 0.2422 2.6200 35 1 2.3549 -0.3249 3.2406 36 1 2.2757 1.1283 2.2157 37 1 0.3517 -1.8401 1.7605 38 1 1.2935 -2.4940 0.3990 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793289016.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:06 Heat of formation + Delta-G solvation = -113.109724 kcal Electronic energy + Delta-G solvation = -27452.744104 eV Core-core repulsion = 22916.952011 eV Total energy + Delta-G solvation = -4535.792094 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -51.03899 -48.61479 -48.45738 -41.75126 -40.70107 -38.30828 -35.85153 -34.96871 -32.55739 -32.03645 -30.31726 -29.41557 -27.00830 -26.55960 -25.02518 -23.32908 -22.73553 -21.33972 -20.93973 -19.54282 -19.46116 -19.25519 -18.49888 -17.83871 -17.37106 -17.02634 -16.23188 -16.14144 -15.75751 -15.56382 -15.45508 -15.37950 -15.23220 -15.03160 -14.95019 -14.76177 -14.68774 -14.66822 -14.46674 -13.60038 -13.44359 -13.25153 -13.07020 -13.00705 -12.85892 -12.85240 -12.77997 -12.45955 -12.25055 -12.02055 -11.75871 -10.98010 -10.78074 -10.48420 -10.06788 -9.46631 -8.47120 -8.44721 -6.21574 1.25060 1.40866 1.56979 1.59725 1.74290 1.91293 2.03953 2.23904 2.56024 2.62828 2.90972 2.96990 3.11491 3.13250 3.49965 3.83458 3.94100 4.09385 4.12142 4.31215 4.47357 4.50528 4.61725 4.63812 4.74846 4.83134 5.03293 5.07822 5.12754 5.18021 5.33221 5.54780 5.65918 5.86468 5.99464 6.37039 6.77731 6.85061 7.47586 7.53187 7.73420 8.54855 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.025613 B = 0.002886 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.913292 B = 9699.297545 C =10457.252551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.085 3.915 3 H 0.144 0.856 4 C 0.496 3.504 5 O -0.561 6.561 6 N -0.615 5.615 7 C -0.040 4.040 8 C -0.060 4.060 9 N -0.313 5.313 10 N -0.171 5.171 11 C -0.354 4.354 12 H 0.141 0.859 13 C -0.008 4.008 14 N -0.827 5.827 15 Si 1.019 2.981 16 H -0.240 1.240 17 H -0.274 1.274 18 H -0.274 1.274 19 C -0.080 4.080 20 N -0.539 5.539 21 C 0.009 3.991 22 C 0.015 3.985 23 C 0.456 3.544 24 F -0.182 7.182 25 F -0.191 7.191 26 F -0.187 7.187 27 H 0.088 0.912 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.419 0.581 31 H 0.165 0.835 32 H 0.275 0.725 33 H 0.188 0.812 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.374 11.089 15.966 22.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.026 4.026 3 H 0.161 0.839 4 C 0.283 3.717 5 O -0.439 6.439 6 N -0.261 5.261 7 C -0.146 4.146 8 C -0.235 4.235 9 N -0.145 5.145 10 N 0.060 4.940 11 C -0.485 4.485 12 H 0.159 0.841 13 C -0.219 4.219 14 N -0.455 5.455 15 Si 0.838 3.162 16 H -0.162 1.162 17 H -0.200 1.200 18 H -0.199 1.199 19 C -0.231 4.231 20 N -0.263 5.263 21 C -0.138 4.138 22 C -0.114 4.114 23 C 0.402 3.598 24 F -0.163 7.163 25 F -0.173 7.173 26 F -0.169 7.169 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.257 0.743 31 H 0.181 0.819 32 H 0.085 0.915 33 H 0.205 0.795 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.128 0.872 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.763 9.228 15.227 19.845 hybrid contribution -0.716 0.284 0.065 0.773 sum -9.479 9.512 15.292 20.351 Atomic orbital electron populations 1.22467 0.92213 1.03472 1.05736 1.21638 0.96109 0.98921 0.85931 0.83866 1.21254 0.79930 0.85785 0.84757 1.90611 1.41873 1.25147 1.86250 1.42426 1.55448 1.25445 1.02748 1.17314 1.12596 0.98103 0.86586 1.24141 1.05272 0.98568 0.95532 1.78152 1.23691 1.12517 1.00160 1.44835 1.31069 1.12249 1.05853 1.20640 1.38997 1.11499 0.77350 0.84141 1.26868 0.94185 0.93922 1.06916 1.70409 1.27695 1.08664 1.38731 0.84544 0.78591 0.79752 0.73350 1.16211 1.19954 1.19877 1.22021 1.11419 1.00446 0.89173 1.61394 1.58008 1.02580 1.04311 1.22863 1.01997 0.98190 0.90730 1.23281 0.96261 0.91996 0.99887 1.20738 0.79087 0.79150 0.80859 1.93110 1.96440 1.83790 1.42973 1.93159 1.85410 1.42110 1.96613 1.93198 1.38001 1.96245 1.89428 0.89340 0.92651 0.88326 0.74329 0.81858 0.91548 0.79455 0.92287 0.90726 0.88861 0.87196 0.87597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 8.40 71.98 0.60 -1.53 16 2 C 0.09 1.55 2.70 44.17 0.12 1.67 16 3 H 0.14 1.79 7.86 -2.39 -0.02 1.77 16 4 C 0.50 15.27 6.74 87.66 0.59 15.87 16 5 O -0.56 -23.26 11.75 -3.10 -0.04 -23.30 16 6 N -0.61 -19.05 5.44 -303.93 -1.65 -20.71 16 7 C -0.04 -1.76 6.90 37.73 0.26 -1.50 16 8 C -0.06 -3.25 10.85 85.42 0.93 -2.32 16 9 N -0.31 -19.01 10.40 -56.46 -0.59 -19.60 16 10 N -0.17 -9.44 3.74 -190.01 -0.71 -10.15 16 11 C -0.35 -18.71 10.25 84.01 0.86 -17.85 16 12 H 0.14 6.40 7.83 -2.91 -0.02 6.38 16 13 C -0.01 -0.40 5.50 84.95 0.47 0.06 16 14 N -0.83 -48.32 11.81 21.66 0.26 -48.06 16 15 Si 1.02 38.77 29.55 68.60 2.03 40.80 16 16 H -0.24 -8.08 7.11 99.48 0.71 -7.37 16 17 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 18 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 19 C -0.08 -3.62 11.49 83.37 0.96 -2.66 16 20 N -0.54 -11.19 4.18 -901.46 -3.77 -14.96 16 21 C 0.01 0.12 8.84 127.69 1.13 1.24 16 22 C 0.02 0.34 3.33 86.30 0.29 0.63 16 23 C 0.46 11.63 3.25 71.98 0.23 11.87 16 24 F -0.18 -4.00 14.63 44.97 0.66 -3.35 16 25 F -0.19 -5.09 17.32 44.97 0.78 -4.31 16 26 F -0.19 -6.13 17.13 44.97 0.77 -5.36 16 27 H 0.09 0.85 8.00 -2.39 -0.02 0.83 16 28 H 0.05 0.82 6.62 -2.39 -0.02 0.80 16 29 H 0.10 0.65 7.06 -2.39 -0.02 0.63 16 30 H 0.42 8.77 8.69 -92.71 -0.81 7.97 16 31 H 0.16 9.10 5.92 -2.91 -0.02 9.09 16 32 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 33 H 0.19 6.51 8.06 -2.91 -0.02 6.49 16 34 H 0.06 0.51 7.03 -2.39 -0.02 0.49 16 35 H 0.07 1.17 5.85 -2.38 -0.01 1.16 16 36 H 0.09 0.94 7.91 -2.39 -0.02 0.92 16 37 H 0.11 1.62 7.13 -2.39 -0.02 1.60 16 38 H 0.11 2.96 5.96 -2.39 -0.01 2.95 16 Total: -1.00 -79.49 327.74 4.50 -74.98 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: 0.33 Total: 28.53 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 6.44 Total: 5.48 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -6.47 Total: -113.48 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.04 Total: -23.30 kcal Atomic # 9 Polarization: -15.22 SS G_CDS: 2.21 Total: -13.01 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -79.49 4.50 -74.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793289016.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.125 kcal (2) G-P(sol) polarization free energy of solvation -79.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds