Wall clock time and date at job start Tue Mar 31 2020 13:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 119.99956 * 2 1 4 4 H 1.48494 * 109.46979 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46980 * 120.00098 * 3 2 1 6 6 H 1.48505 * 109.47065 * 240.00086 * 3 2 1 7 7 C 1.37888 * 120.00272 * 180.27537 * 2 1 3 8 8 H 1.07994 * 119.99879 * 186.28969 * 7 2 1 9 9 C 1.50697 * 119.99810 * 6.29033 * 7 2 1 10 10 H 1.08998 * 109.46929 * 30.30485 * 9 7 2 11 11 C 1.52998 * 109.47219 * 150.30362 * 9 7 2 12 12 C 1.50704 * 109.47055 * 294.05851 * 11 9 7 13 13 O 1.20822 * 120.00110 * 359.97438 * 12 11 9 14 14 O 1.34230 * 119.99722 * 180.02562 * 12 11 9 15 15 C 1.45194 * 116.99915 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47233 * 179.97438 * 15 14 12 17 17 C 1.53003 * 109.47372 * 179.97438 * 16 15 14 18 18 O 1.43756 * 109.62773 * 294.36679 * 17 16 15 19 19 C 1.44789 * 104.81093 * 215.80318 * 18 17 16 20 20 C 1.54911 * 101.72150 * 36.10704 * 19 18 17 21 21 O 1.43361 * 109.63530 * 175.00209 * 17 16 15 22 22 C 1.50698 * 109.47058 * 270.30771 * 9 7 2 23 23 C 1.38241 * 119.99754 * 304.21840 * 22 9 7 24 24 C 1.38231 * 119.99710 * 179.79203 * 23 22 9 25 25 C 1.38236 * 120.00470 * 0.43866 * 24 23 22 26 26 C 1.38234 * 119.99567 * 359.81151 * 25 24 23 27 27 C 1.38236 * 120.00247 * 124.49040 * 22 9 7 28 28 H 0.97003 * 119.99865 * 174.79175 * 1 2 3 29 29 H 1.09003 * 109.46962 * 54.05290 * 11 9 7 30 30 H 1.08998 * 109.47191 * 174.05302 * 11 9 7 31 31 H 1.09003 * 109.47039 * 299.99559 * 15 14 12 32 32 H 1.09003 * 109.47236 * 59.99185 * 15 14 12 33 33 H 1.08994 * 109.47109 * 299.99880 * 16 15 14 34 34 H 1.09004 * 109.47041 * 60.00180 * 16 15 14 35 35 H 1.08997 * 109.62662 * 54.60355 * 17 16 15 36 36 H 1.08995 * 110.97857 * 277.99232 * 19 18 17 37 37 H 1.09007 * 111.00574 * 154.22635 * 19 18 17 38 38 H 1.08994 * 110.69454 * 206.03865 * 20 19 18 39 39 H 1.09000 * 110.84436 * 82.89817 * 20 19 18 40 40 H 1.07999 * 119.99604 * 359.97438 * 23 22 9 41 41 H 1.08000 * 119.99845 * 180.27329 * 24 23 22 42 42 H 1.07997 * 120.00283 * 179.83572 * 25 24 23 43 43 H 1.08003 * 119.99916 * 179.97438 * 26 25 24 44 44 H 1.07997 * 119.99786 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1029 1.6965 -1.2126 7 6 2.0046 -1.1941 -0.0057 8 1 3.0796 -1.1973 0.0967 9 6 1.2579 -2.4946 -0.1550 10 1 0.3610 -2.3320 -0.7527 11 6 2.1549 -3.5208 -0.8500 12 6 2.4259 -3.0753 -2.2639 13 8 1.9500 -2.0432 -2.6739 14 8 3.1951 -3.8258 -3.0682 15 6 3.4129 -3.3354 -4.4174 16 6 4.3075 -4.3162 -5.1783 17 6 4.5365 -3.7998 -6.6002 18 8 3.2931 -3.8038 -7.3216 19 6 3.6531 -4.1612 -8.6777 20 6 4.7962 -5.1797 -8.4419 21 8 5.4669 -4.6538 -7.2788 22 6 0.8676 -3.0088 1.2067 23 6 1.8351 -3.2067 2.1742 24 6 1.4765 -3.6744 3.4246 25 6 0.1518 -3.9528 3.7048 26 6 -0.8149 -3.7598 2.7357 27 6 -0.4570 -3.2880 1.4866 28 1 -0.4850 -0.8366 -0.0763 29 1 3.0973 -3.6052 -0.3088 30 1 1.6557 -4.4896 -0.8636 31 1 2.4552 -3.2441 -4.9299 32 1 3.8972 -2.3598 -4.3757 33 1 5.2651 -4.4071 -4.6657 34 1 3.8235 -5.2920 -5.2200 35 1 4.9318 -2.7848 -6.5619 36 1 4.0124 -3.2917 -9.2281 37 1 2.8146 -4.6284 -9.1944 38 1 5.4715 -5.2056 -9.2970 39 1 4.3952 -6.1728 -8.2391 40 1 2.8706 -2.9931 1.9539 41 1 2.2318 -3.8248 4.1818 42 1 -0.1279 -4.3206 4.6809 43 1 -1.8498 -3.9777 2.9544 44 1 -1.2122 -3.1372 0.7295 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795992120.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:30 Heat of formation + Delta-G solvation = -160.787883 kcal Electronic energy + Delta-G solvation = -26437.057700 eV Core-core repulsion = 22512.302459 eV Total energy + Delta-G solvation = -3924.755241 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.68177 -39.76194 -38.48956 -36.17701 -35.33267 -34.29660 -33.07378 -31.41267 -30.13064 -29.64083 -28.96082 -25.75429 -24.63435 -23.57568 -22.98583 -21.77605 -21.64434 -20.65200 -19.55929 -17.68948 -17.23745 -16.99998 -16.74375 -16.44890 -15.90483 -15.71877 -15.50333 -14.87865 -14.43020 -14.17141 -13.98807 -13.71484 -13.63164 -13.34097 -13.06306 -12.92003 -12.71711 -12.52123 -12.39855 -12.01947 -11.88843 -11.64750 -11.45189 -11.33442 -11.00091 -10.73771 -10.60488 -10.46078 -10.19740 -10.10100 -10.07037 -10.03167 -9.72203 -9.54192 -8.70300 -8.33891 -8.15476 -7.67789 -6.29224 -3.98374 2.17437 2.21594 2.93435 3.08628 3.22093 3.47506 3.52726 3.68312 3.78809 4.19240 4.49705 4.57321 4.60753 4.63753 4.76056 4.89558 4.96479 5.12315 5.14574 5.34137 5.42406 5.47789 5.49916 5.58622 5.61445 5.72979 5.74279 5.89181 5.95412 6.00469 6.01911 6.14165 6.29333 6.37814 6.58235 6.68830 6.75703 6.88048 7.08698 7.13411 7.20750 7.35307 7.66456 7.82895 8.14349 8.44231 8.62088 8.91237 9.71682 11.10990 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.014415 B = 0.002928 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.007215 B = 9560.162602 C =10755.561999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.034 3.966 3 Si 1.063 2.937 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.577 4.577 8 H 0.048 0.952 9 C 0.068 3.932 10 H 0.053 0.947 11 C -0.089 4.089 12 C 0.458 3.542 13 O -0.469 6.469 14 O -0.373 6.373 15 C 0.072 3.928 16 C -0.130 4.130 17 C 0.237 3.763 18 O -0.374 6.374 19 C 0.015 3.985 20 C 0.020 3.980 21 O -0.382 6.382 22 C -0.032 4.032 23 C -0.107 4.107 24 C -0.129 4.129 25 C -0.151 4.151 26 C -0.124 4.124 27 C -0.128 4.128 28 H 0.270 0.730 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.273 -11.717 -11.264 17.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.172 4.172 3 Si 0.892 3.108 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.614 4.614 8 H 0.066 0.934 9 C 0.049 3.951 10 H 0.071 0.929 11 C -0.127 4.127 12 C 0.299 3.701 13 O -0.352 6.352 14 O -0.292 6.292 15 C -0.003 4.003 16 C -0.168 4.168 17 C 0.142 3.858 18 O -0.294 6.294 19 C -0.061 4.061 20 C -0.056 4.056 21 O -0.303 6.303 22 C -0.033 4.033 23 C -0.125 4.125 24 C -0.147 4.147 25 C -0.169 4.169 26 C -0.142 4.142 27 C -0.147 4.147 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.128 0.872 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.134 0.866 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.914 -9.708 -11.201 16.356 hybrid contribution 0.190 -1.438 -0.242 1.470 sum 7.104 -11.145 -11.443 17.482 Atomic orbital electron populations 1.70765 1.06879 1.31188 1.44904 1.25620 0.96407 1.02282 0.92935 0.83635 0.75082 0.75785 0.76313 1.20846 1.21605 1.21491 1.21574 0.93952 0.90594 1.55306 0.93402 1.17942 0.96091 0.92898 0.88126 0.92915 1.21493 1.02826 1.00424 0.87964 1.23923 0.75505 0.82329 0.88381 1.90710 1.46900 1.22836 1.74775 1.86474 1.66185 1.52543 1.24012 1.22633 1.00159 0.96901 0.80590 1.21910 1.01736 1.00476 0.92696 1.23975 0.77713 0.94227 0.89928 1.89315 1.28890 1.90753 1.20460 1.24404 0.98686 0.97850 0.85186 1.24210 0.94693 0.97954 0.88752 1.88901 1.37139 1.64765 1.39512 1.20708 0.92421 0.91457 0.98690 1.20931 0.99719 0.99026 0.92820 1.21015 0.95840 1.00990 0.96855 1.20839 0.93531 1.03867 0.98689 1.20965 0.98406 1.00824 0.94039 1.21061 0.96364 1.00494 0.96753 0.91812 0.89073 0.90402 0.90866 0.91380 0.88748 0.89800 0.89182 0.90433 0.87208 0.88131 0.90460 0.86612 0.87353 0.87516 0.87389 0.87102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.63 55.43 0.76 -26.54 16 2 C 0.03 0.96 5.45 -17.82 -0.10 0.86 16 3 Si 1.06 26.03 29.91 -169.99 -5.08 20.94 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.58 -15.60 6.41 -34.44 -0.22 -15.82 16 8 H 0.05 1.29 7.82 -52.49 -0.41 0.88 16 9 C 0.07 1.63 1.31 -92.93 -0.12 1.51 16 10 H 0.05 1.40 6.24 -51.93 -0.32 1.08 16 11 C -0.09 -1.79 5.05 -27.88 -0.14 -1.93 16 12 C 0.46 9.68 7.71 36.01 0.28 9.96 16 13 O -0.47 -11.75 14.77 -18.75 -0.28 -12.03 16 14 O -0.37 -6.71 10.22 -39.26 -0.40 -7.11 16 15 C 0.07 1.11 5.37 37.16 0.20 1.31 16 16 C -0.13 -1.59 5.68 -26.73 -0.15 -1.74 16 17 C 0.24 2.64 4.01 37.16 0.15 2.79 16 18 O -0.37 -4.35 10.92 -59.04 -0.64 -4.99 16 19 C 0.02 0.11 7.95 38.17 0.30 0.41 16 20 C 0.02 0.14 8.07 38.17 0.31 0.45 16 21 O -0.38 -4.07 11.21 -59.04 -0.66 -4.73 16 22 C -0.03 -0.71 4.77 -104.62 -0.50 -1.21 16 23 C -0.11 -2.17 8.88 -39.58 -0.35 -2.52 16 24 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 25 C -0.15 -2.61 10.05 -39.58 -0.40 -3.00 16 26 C -0.12 -2.26 10.05 -39.58 -0.40 -2.66 16 27 C -0.13 -2.67 9.67 -39.58 -0.38 -3.05 16 28 H 0.27 8.07 6.68 -40.82 -0.27 7.80 16 29 H 0.09 1.71 7.86 -51.93 -0.41 1.30 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.07 1.19 7.84 -51.93 -0.41 0.79 16 32 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.12 2.29 7.80 -52.49 -0.41 1.88 16 41 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 43 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 44 H 0.11 2.26 7.95 -52.49 -0.42 1.84 16 LS Contribution 372.10 15.07 5.61 5.61 Total: -1.00 -33.64 372.10 -9.14 -42.78 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.52 Total: 3.42 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -1.92 Total: -17.35 kcal Atomic # 7 Polarization: -27.29 SS G_CDS: 0.76 Total: -26.54 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -1.99 Total: -28.86 kcal Atomic # 14 Polarization: 26.03 SS G_CDS: -5.08 Total: 20.94 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.64 -9.14 -42.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795992120.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.007 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds