Wall clock time and date at job start Tue Mar 31 2020 13:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00051 * 2 1 4 4 H 1.48506 * 109.47399 * 270.00025 * 3 2 1 5 5 H 1.48500 * 109.47318 * 29.99809 * 3 2 1 6 6 H 1.48500 * 109.47300 * 150.00018 * 3 2 1 7 7 C 1.37880 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99979 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99771 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47052 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47476 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47636 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47548 * 179.97438 * 12 11 10 14 14 O 1.20835 * 119.99710 * 359.97438 * 13 12 11 15 15 O 1.34241 * 120.00457 * 179.97438 * 13 12 11 16 16 C 1.35980 * 117.00199 * 185.77233 * 15 13 12 17 17 C 1.38710 * 119.95071 * 249.01674 * 16 15 13 18 18 C 1.38302 * 120.16224 * 180.02562 * 17 16 15 19 19 C 1.38465 * 119.78284 * 359.96129 * 18 17 16 20 20 C 1.38758 * 120.15644 * 0.02562 * 19 18 17 21 21 C 1.38427 * 120.12794 * 0.02562 * 20 19 18 22 22 O 1.36471 * 119.60787 * 179.97438 * 20 19 18 23 23 C 1.42723 * 115.87612 * 68.27839 * 22 20 19 24 24 C 1.52064 * 110.87541 * 275.50116 * 23 22 20 25 25 C 1.52061 * 112.29158 * 64.86626 * 24 23 22 26 26 O 1.36546 * 120.25557 * 179.97438 * 19 18 17 27 27 H 0.97000 * 120.00110 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47183 * 59.99918 * 9 7 2 29 29 H 1.08994 * 109.47243 * 299.99700 * 9 7 2 30 30 H 1.09002 * 109.47015 * 60.00034 * 10 9 7 31 31 H 1.09004 * 109.47537 * 299.99973 * 10 9 7 32 32 H 1.08996 * 109.47414 * 59.99916 * 11 10 9 33 33 H 1.09011 * 109.46873 * 300.00103 * 11 10 9 34 34 H 1.08996 * 109.47040 * 59.99377 * 12 11 10 35 35 H 1.09006 * 109.46587 * 300.00256 * 12 11 10 36 36 H 1.07997 * 119.91977 * 0.03061 * 17 16 15 37 37 H 1.07999 * 120.10728 * 180.02562 * 18 17 16 38 38 H 1.07996 * 120.16868 * 179.97438 * 21 20 19 39 39 H 1.09002 * 109.08534 * 155.19032 * 23 22 20 40 40 H 1.09001 * 109.24846 * 35.92045 * 23 22 20 41 41 H 1.08991 * 108.89944 * 304.16527 * 24 23 22 42 42 H 1.09003 * 108.89998 * 185.56143 * 24 23 22 43 43 H 1.08999 * 109.22039 * 55.57320 * 25 24 23 44 44 H 1.08999 * 109.21525 * 174.90816 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4803 -4.9871 -0.0001 12 6 2.4745 -6.1501 0.0005 13 6 1.7210 -7.4551 0.0005 14 8 0.5127 -7.4551 0.0005 15 8 2.3922 -8.6177 0.0005 16 6 1.6569 -9.7551 -0.1213 17 6 1.5448 -10.6256 0.9527 18 6 0.7985 -11.7839 0.8335 19 6 0.1622 -12.0720 -0.3621 20 6 0.2727 -11.2025 -1.4378 21 6 1.0202 -10.0434 -1.3203 22 8 -0.3587 -11.4978 -2.6111 23 6 -1.7847 -11.4475 -2.5809 24 6 -2.3625 -12.7590 -2.0724 25 6 -1.9883 -13.0310 -0.6239 26 8 -0.5767 -13.2131 -0.4907 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8719 -3.6043 0.8905 31 1 2.8719 -3.6044 -0.8895 32 1 0.8539 -5.0447 -0.8903 33 1 0.8533 -5.0451 0.8897 34 1 3.1005 -6.0923 0.8909 35 1 3.1018 -6.0922 -0.8890 36 1 2.0414 -10.3984 1.8844 37 1 0.7114 -12.4609 1.6704 38 1 1.1070 -9.3664 -2.1572 39 1 -2.1560 -11.2584 -3.5881 40 1 -2.1018 -10.6372 -1.9244 41 1 -1.9888 -13.5735 -2.6927 42 1 -3.4487 -12.7220 -2.1556 43 1 -2.3013 -12.1879 -0.0080 44 1 -2.4997 -13.9317 -0.2844 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805872816.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:04 Heat of formation + Delta-G solvation = -144.161824 kcal Electronic energy + Delta-G solvation = -25906.786523 eV Core-core repulsion = 21982.752242 eV Total energy + Delta-G solvation = -3924.034281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.67598 -40.83449 -38.16320 -37.85115 -36.61209 -35.06087 -33.19497 -32.72281 -30.99694 -30.14363 -29.04512 -26.97836 -26.03991 -23.98722 -23.15885 -22.08132 -22.04589 -20.74554 -20.09487 -18.96426 -18.21594 -17.73786 -17.15321 -16.70564 -16.22309 -16.18345 -15.78605 -15.63586 -14.69827 -14.64159 -14.48949 -14.42722 -14.34389 -14.07060 -13.69881 -13.25465 -12.86669 -12.76063 -12.35688 -12.25940 -11.82073 -11.74659 -11.69459 -11.46449 -11.07328 -11.04351 -10.83774 -10.70795 -10.64494 -10.53513 -10.50203 -10.33662 -9.69423 -9.34435 -9.24959 -9.05913 -8.74051 -8.34164 -5.98968 -4.01611 0.53135 0.75885 2.05211 2.37107 3.02608 3.13070 3.32164 3.38426 3.41551 3.46578 4.19896 4.23713 4.41787 4.46179 4.53466 4.66637 4.70545 4.82106 4.88882 4.91379 4.94735 5.12074 5.17121 5.18061 5.29203 5.36670 5.38848 5.51335 5.54403 5.67911 5.80864 5.87620 5.98458 6.01036 6.13796 6.34962 6.45491 6.69803 6.70905 6.88856 7.11812 7.14279 7.68978 7.71570 7.83221 8.01455 8.43118 9.05907 9.62373 11.12347 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.025380 B = 0.001980 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.987210 B =14134.691064 C =14753.773405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.109 4.109 12 C -0.109 4.109 13 C 0.457 3.543 14 O -0.485 6.485 15 O -0.295 6.295 16 C 0.100 3.900 17 C -0.111 4.111 18 C -0.100 4.100 19 C 0.063 3.937 20 C 0.083 3.917 21 C -0.122 4.122 22 O -0.317 6.317 23 C 0.057 3.943 24 C -0.187 4.187 25 C 0.058 3.942 26 O -0.318 6.318 27 H 0.260 0.740 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.107 0.893 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.060 0.940 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.463 -28.858 -0.860 28.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.147 4.147 12 C -0.146 4.146 13 C 0.301 3.699 14 O -0.369 6.369 15 O -0.211 6.211 16 C 0.059 3.941 17 C -0.129 4.129 18 C -0.119 4.119 19 C 0.019 3.981 20 C 0.039 3.961 21 C -0.141 4.141 22 O -0.233 6.233 23 C -0.017 4.017 24 C -0.224 4.224 25 C -0.017 4.017 26 O -0.234 6.234 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.161 0.839 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.125 0.875 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.078 0.922 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.887 -28.978 -1.024 29.057 hybrid contribution 0.062 1.033 -0.016 1.035 sum -1.826 -27.945 -1.040 28.024 Atomic orbital electron populations 1.69970 1.06067 1.26576 1.50862 1.25045 0.94856 0.99295 0.95402 0.86596 0.79825 0.83498 0.78077 1.20687 1.21258 1.19882 1.21265 0.93026 0.91107 1.50521 0.92658 1.19096 0.94021 0.91235 0.97365 1.21654 0.99173 0.93399 1.00530 1.21612 0.97075 0.92644 1.03345 1.21671 1.00018 0.86973 1.05957 1.24749 0.87905 0.85265 0.71990 1.90708 1.15485 1.87029 1.43668 1.84719 1.39602 1.13290 1.83505 1.18324 0.95781 0.86935 0.93082 1.21058 0.99315 0.94339 0.98191 1.20933 0.98113 0.96663 0.96175 1.19170 0.97780 0.88195 0.92995 1.18807 0.97713 0.93213 0.86381 1.21225 0.98843 0.96116 0.97917 1.86345 1.19550 1.88503 1.28913 1.22662 0.78901 0.96777 1.03388 1.22471 1.02300 0.99789 0.97888 1.22684 0.79874 1.03174 0.95967 1.86407 1.18212 1.26433 1.92384 0.93013 0.96563 0.96531 0.93085 0.93109 0.91470 0.91426 0.87428 0.87426 0.83904 0.83743 0.84150 0.87546 0.92035 0.89735 0.88945 0.92183 0.87667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 10 C -0.11 -2.15 5.15 -26.73 -0.14 -2.29 16 11 C -0.11 -1.81 4.50 -26.73 -0.12 -1.93 16 12 C -0.11 -1.36 5.81 -27.89 -0.16 -1.53 16 13 C 0.46 6.34 7.73 36.00 0.28 6.62 16 14 O -0.49 -8.18 15.39 -18.76 -0.29 -8.46 16 15 O -0.30 -3.74 10.04 -23.73 -0.24 -3.98 16 16 C 0.10 1.24 5.27 -39.21 -0.21 1.04 16 17 C -0.11 -1.13 9.98 -39.38 -0.39 -1.53 16 18 C -0.10 -0.96 10.00 -39.47 -0.39 -1.36 16 19 C 0.06 0.70 5.73 -39.31 -0.23 0.47 16 20 C 0.08 1.01 5.72 -39.32 -0.22 0.79 16 21 C -0.12 -1.54 9.28 -39.31 -0.36 -1.90 16 22 O -0.32 -3.74 10.16 -36.72 -0.37 -4.11 16 23 C 0.06 0.48 6.49 36.68 0.24 0.72 16 24 C -0.19 -1.20 5.93 -27.69 -0.16 -1.37 16 25 C 0.06 0.41 6.51 36.68 0.24 0.65 16 26 O -0.32 -3.33 10.17 -36.96 -0.38 -3.70 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 33 H 0.07 1.18 8.10 -51.92 -0.42 0.76 16 34 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.52 7.93 -51.93 -0.41 0.11 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.42 7.93 -51.93 -0.41 0.01 16 44 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 371.27 15.07 5.59 5.59 Total: -1.00 -33.83 371.27 -8.86 -42.68 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -6.70 Total: -3.47 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -2.19 Total: -14.77 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.74 Total: -26.40 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -1.28 Total: -20.26 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.83 -8.86 -42.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805872816.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.477 kcal (2) G-P(sol) polarization free energy of solvation -33.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds