Wall clock time and date at job start Tue Mar 31 2020 12:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21284 * 119.99849 * 2 1 4 4 N 1.34778 * 119.99611 * 179.97438 * 2 1 3 5 5 C 1.39980 * 119.99741 * 185.26699 * 4 2 1 6 6 C 1.38985 * 120.41835 * 212.74430 * 5 4 2 7 7 N 1.31865 * 120.97715 * 179.97438 * 6 5 4 8 8 C 1.31685 * 121.95851 * 359.97438 * 7 6 5 9 9 C 1.39536 * 120.72635 * 0.02562 * 8 7 6 10 10 C 1.47855 * 120.52549 * 179.97438 * 9 8 7 11 11 O 1.21555 * 120.00258 * 179.97438 * 10 9 8 12 12 N 1.34776 * 120.00347 * 0.02562 * 10 9 8 13 13 N 1.40095 * 120.00405 * 179.97438 * 12 10 9 14 14 C 1.34784 * 120.00190 * 179.97438 * 13 12 10 15 15 O 1.21281 * 119.99436 * 0.02562 * 14 13 12 16 16 C 1.50692 * 119.99972 * 180.02562 * 14 13 12 17 17 C 1.53005 * 109.47071 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47077 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99780 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99642 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00335 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99743 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47120 * 90.00245 * 22 20 18 24 24 H 1.48503 * 109.47103 * 209.99959 * 22 20 18 25 25 H 1.48501 * 109.47021 * 329.99993 * 22 20 18 26 26 C 1.38992 * 120.42239 * 32.72163 * 5 4 2 27 27 H 1.09005 * 109.47539 * 240.00372 * 1 2 3 28 28 H 1.09001 * 109.46928 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47435 * 119.99658 * 1 2 3 30 30 H 0.97000 * 120.00337 * 5.27005 * 4 2 1 31 31 H 1.07993 * 119.51419 * 359.97438 * 6 5 4 32 32 H 1.07999 * 119.63783 * 180.02562 * 8 7 6 33 33 H 0.97000 * 119.99717 * 359.97438 * 12 10 9 34 34 H 0.96999 * 119.99839 * 359.97438 * 13 12 10 35 35 H 1.09004 * 109.47201 * 299.99622 * 16 14 13 36 36 H 1.09001 * 109.47170 * 59.99914 * 16 14 13 37 37 H 1.09004 * 109.46726 * 299.99824 * 17 16 14 38 38 H 1.08997 * 109.46822 * 60.00066 * 17 16 14 39 39 H 0.97003 * 120.00593 * 180.02562 * 21 20 18 40 40 H 1.08004 * 120.87987 * 0.04672 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5762 -1.1698 0.1118 6 6 4.3310 -2.1487 -0.5236 7 7 5.6460 -2.1612 -0.4266 8 6 6.3023 -1.2562 0.2694 9 6 5.6206 -0.2388 0.9381 10 6 6.3619 0.7747 1.7187 11 8 5.7585 1.6572 2.2972 12 7 7.7068 0.7208 1.7881 13 7 8.4093 1.6814 2.5273 14 6 9.7542 1.6271 2.5971 15 8 10.3563 0.7469 2.0195 16 6 10.5097 2.6601 3.3927 17 6 12.0100 2.3721 3.3080 18 6 12.7656 3.4055 4.1032 19 1 12.2293 4.1895 4.6172 20 6 14.1413 3.3500 4.1744 21 7 14.7942 2.3950 3.5490 22 14 15.0779 4.6305 5.1606 23 1 15.2345 4.1600 6.5604 24 1 16.4180 4.8385 4.5555 25 1 14.3257 5.9109 5.1499 26 6 4.2245 -0.1932 0.8588 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3634 -0.5137 -0.8899 30 1 1.6989 -2.0056 -0.0763 31 1 3.8333 -2.9102 -1.1054 32 1 7.3800 -1.3020 0.3232 33 1 8.1884 0.0168 1.3262 34 1 7.9277 2.3856 2.9889 35 1 10.3069 3.6512 2.9868 36 1 10.1902 2.6217 4.4342 37 1 12.2131 1.3810 3.7137 38 1 12.3291 2.4108 2.2665 39 1 15.7621 2.3557 3.5994 40 1 3.6653 0.5802 1.3643 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812536867.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:28 Heat of formation + Delta-G solvation = -40.568374 kcal Electronic energy + Delta-G solvation = -25030.621998 eV Core-core repulsion = 21039.832273 eV Total energy + Delta-G solvation = -3990.789724 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.50923 -40.34837 -39.52076 -38.59709 -35.72729 -35.29995 -33.54297 -33.00398 -32.08014 -31.35951 -30.28820 -29.25842 -25.97103 -24.82987 -24.25364 -22.07409 -21.68796 -21.17995 -20.17549 -18.61806 -18.09788 -17.68294 -17.36829 -17.09334 -16.57352 -16.18931 -15.67340 -15.58497 -15.39453 -14.84452 -14.71074 -14.47224 -14.38041 -14.11243 -13.59497 -13.45208 -13.25394 -13.07713 -12.84079 -12.62399 -12.24192 -11.52394 -11.24625 -11.21108 -11.00275 -10.94112 -10.64208 -10.54009 -10.16503 -10.03711 -9.87823 -9.79968 -9.42690 -9.13875 -8.93868 -8.37234 -8.27251 -5.99338 -4.04058 0.12218 0.65605 1.80886 1.95027 2.34371 2.45268 3.02136 3.32905 3.39218 3.40989 3.41899 3.72006 3.99268 4.08598 4.22652 4.41224 4.44774 4.53412 4.56273 4.69305 4.72258 4.76583 5.21708 5.33518 5.36104 5.41089 5.53551 5.61402 6.10468 6.11165 6.12323 6.62243 6.64564 6.69915 6.84467 7.32665 7.45862 7.62836 7.69974 7.78166 7.83923 8.01441 8.32825 8.58197 9.03550 9.59926 11.11517 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.033432 B = 0.001940 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.316086 B =14428.648243 C =15179.595428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.508 3.492 3 O -0.516 6.516 4 N -0.671 5.671 5 C 0.088 3.912 6 C 0.102 3.898 7 N -0.461 5.461 8 C 0.120 3.880 9 C -0.154 4.154 10 C 0.561 3.439 11 O -0.533 6.533 12 N -0.515 5.515 13 N -0.534 5.534 14 C 0.513 3.487 15 O -0.532 6.532 16 C -0.119 4.119 17 C 0.037 3.963 18 C -0.529 4.529 19 H 0.058 0.942 20 C 0.059 3.941 21 N -0.889 5.889 22 Si 0.894 3.106 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.019 4.019 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.416 0.584 31 H 0.165 0.835 32 H 0.165 0.835 33 H 0.430 0.570 34 H 0.430 0.570 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.261 0.739 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.224 -10.926 -8.152 34.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.296 3.704 3 O -0.389 6.389 4 N -0.318 5.318 5 C -0.008 4.008 6 C -0.058 4.058 7 N -0.168 5.168 8 C -0.039 4.039 9 C -0.161 4.161 10 C 0.347 3.653 11 O -0.409 6.409 12 N -0.261 5.261 13 N -0.286 5.286 14 C 0.302 3.698 15 O -0.405 6.405 16 C -0.160 4.160 17 C 0.000 4.000 18 C -0.567 4.567 19 H 0.076 0.924 20 C -0.143 4.143 21 N -0.527 5.527 22 Si 0.722 3.278 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.047 4.047 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.253 0.747 31 H 0.182 0.818 32 H 0.182 0.818 33 H 0.273 0.727 34 H 0.272 0.728 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.071 0.929 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -30.164 -10.861 -8.610 33.196 hybrid contribution -0.183 0.799 0.835 1.170 sum -30.347 -10.062 -7.776 32.904 Atomic orbital electron populations 1.21932 0.90017 1.06412 1.04762 1.21189 0.91212 0.82959 0.75042 1.90827 1.70494 1.31094 1.46529 1.43535 1.04285 1.10455 1.73544 1.18685 0.84485 0.98784 0.98896 1.22855 0.89580 0.97595 0.95780 1.67702 1.08433 1.24363 1.16348 1.23031 1.00644 0.88763 0.91499 1.20613 0.94398 0.98271 1.02862 1.17950 0.80406 0.85380 0.81602 1.90822 1.67722 1.36064 1.46273 1.44654 1.04248 1.27238 1.49927 1.45605 1.05038 1.26656 1.51293 1.22158 0.78820 0.87538 0.81264 1.90695 1.67334 1.36729 1.45747 1.21917 0.99671 0.95740 0.98676 1.18950 0.85086 0.97632 0.98363 1.21186 0.91659 1.12304 1.31568 0.92401 1.25014 0.97831 0.95800 0.95680 1.69988 1.07910 1.32340 1.42508 0.86563 0.79281 0.81809 0.80130 1.20653 1.21218 1.19842 1.21688 0.92820 0.97268 0.92944 0.88735 0.88264 0.88871 0.74689 0.81786 0.81791 0.72717 0.72773 0.89367 0.89377 0.95560 0.95553 0.92886 0.82152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.36 10.32 36.01 0.37 0.01 16 2 C 0.51 3.37 7.70 -10.98 -0.08 3.29 16 3 O -0.52 -6.20 14.78 5.55 0.08 -6.12 16 4 N -0.67 -3.19 5.35 -9.79 -0.05 -3.24 16 5 C 0.09 0.70 6.31 -83.58 -0.53 0.17 16 6 C 0.10 0.73 11.11 -17.26 -0.19 0.54 16 7 N -0.46 -4.41 10.34 -12.76 -0.13 -4.55 16 8 C 0.12 1.19 10.71 -17.13 -0.18 1.00 16 9 C -0.15 -1.75 5.89 -104.85 -0.62 -2.37 16 10 C 0.56 7.69 7.90 -12.33 -0.10 7.60 16 11 O -0.53 -8.79 16.26 5.32 0.09 -8.71 16 12 N -0.51 -7.07 6.21 30.53 0.19 -6.88 16 13 N -0.53 -8.12 6.26 31.22 0.20 -7.92 16 14 C 0.51 9.50 7.95 -10.99 -0.09 9.42 16 15 O -0.53 -11.65 15.82 5.56 0.09 -11.56 16 16 C -0.12 -2.30 5.64 -27.88 -0.16 -2.46 16 17 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 18 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -26.99 13.28 55.43 0.74 -26.25 16 22 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 C -0.02 -0.21 8.30 -38.67 -0.32 -0.53 16 27 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 28 H 0.10 0.29 8.12 -51.93 -0.42 -0.13 16 29 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 30 H 0.42 0.22 8.82 -40.82 -0.36 -0.14 16 31 H 0.17 0.58 8.06 -52.49 -0.42 0.15 16 32 H 0.17 1.35 6.41 -52.49 -0.34 1.02 16 33 H 0.43 5.36 6.06 -182.60 -1.11 4.25 16 34 H 0.43 5.87 8.00 -182.60 -1.46 4.41 16 35 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.03 0.75 8.10 -51.93 -0.42 0.32 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.16 2.06 6.15 -52.48 -0.32 1.73 16 LS Contribution 356.25 15.07 5.37 5.37 Total: -1.00 -38.97 356.25 -7.39 -46.36 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.50 Total: 2.93 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -2.43 Total: 4.10 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.94 Total: -48.84 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: 0.26 Total: -26.38 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -38.97 -7.39 -46.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812536867.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.793 kcal (2) G-P(sol) polarization free energy of solvation -38.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds