Wall clock time and date at job start Tue Mar 31 2020 12:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21284 * 119.99849 * 2 1 4 4 N 1.34778 * 119.99611 * 179.97438 * 2 1 3 5 5 C 1.39980 * 119.99741 * 185.26699 * 4 2 1 6 6 C 1.38985 * 120.41835 * 212.74430 * 5 4 2 7 7 N 1.31865 * 120.97715 * 179.97438 * 6 5 4 8 8 C 1.31685 * 121.95851 * 359.97438 * 7 6 5 9 9 C 1.39536 * 120.72635 * 0.02562 * 8 7 6 10 10 C 1.47855 * 120.52549 * 179.97438 * 9 8 7 11 11 O 1.21555 * 120.00258 * 179.97438 * 10 9 8 12 12 N 1.34776 * 120.00347 * 0.02562 * 10 9 8 13 13 N 1.40095 * 120.00405 * 179.97438 * 12 10 9 14 14 C 1.34784 * 120.00190 * 179.97438 * 13 12 10 15 15 O 1.21281 * 119.99436 * 0.02562 * 14 13 12 16 16 C 1.50692 * 119.99972 * 180.02562 * 14 13 12 17 17 C 1.53005 * 109.47071 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47077 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99780 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99642 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00335 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99743 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47120 * 90.00245 * 22 20 18 24 24 H 1.48503 * 109.47103 * 209.99959 * 22 20 18 25 25 H 1.48501 * 109.47021 * 329.99993 * 22 20 18 26 26 C 1.38992 * 120.42239 * 32.72163 * 5 4 2 27 27 H 1.09005 * 109.47539 * 240.00372 * 1 2 3 28 28 H 1.09001 * 109.46928 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47435 * 119.99658 * 1 2 3 30 30 H 0.97000 * 120.00337 * 5.27005 * 4 2 1 31 31 H 1.07993 * 119.51419 * 359.97438 * 6 5 4 32 32 H 1.07999 * 119.63783 * 180.02562 * 8 7 6 33 33 H 0.97000 * 119.99717 * 359.97438 * 12 10 9 34 34 H 0.96999 * 119.99839 * 359.97438 * 13 12 10 35 35 H 1.09004 * 109.47201 * 299.99622 * 16 14 13 36 36 H 1.09001 * 109.47170 * 59.99914 * 16 14 13 37 37 H 1.09004 * 109.46726 * 299.99824 * 17 16 14 38 38 H 1.08997 * 109.46822 * 60.00066 * 17 16 14 39 39 H 0.97003 * 120.00593 * 180.02562 * 21 20 18 40 40 H 1.08004 * 120.87987 * 0.04672 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5762 -1.1698 0.1118 6 6 4.3310 -2.1487 -0.5236 7 7 5.6460 -2.1612 -0.4266 8 6 6.3023 -1.2562 0.2694 9 6 5.6206 -0.2388 0.9381 10 6 6.3619 0.7747 1.7187 11 8 5.7585 1.6572 2.2972 12 7 7.7068 0.7208 1.7881 13 7 8.4093 1.6814 2.5273 14 6 9.7542 1.6271 2.5971 15 8 10.3563 0.7469 2.0195 16 6 10.5097 2.6601 3.3927 17 6 12.0100 2.3721 3.3080 18 6 12.7656 3.4055 4.1032 19 1 12.2293 4.1895 4.6172 20 6 14.1413 3.3500 4.1744 21 7 14.7942 2.3950 3.5490 22 14 15.0779 4.6305 5.1606 23 1 15.2345 4.1600 6.5604 24 1 16.4180 4.8385 4.5555 25 1 14.3257 5.9109 5.1499 26 6 4.2245 -0.1932 0.8588 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3634 -0.5137 -0.8899 30 1 1.6989 -2.0056 -0.0763 31 1 3.8333 -2.9102 -1.1054 32 1 7.3800 -1.3020 0.3232 33 1 8.1884 0.0168 1.3262 34 1 7.9277 2.3856 2.9889 35 1 10.3069 3.6512 2.9868 36 1 10.1902 2.6217 4.4342 37 1 12.2131 1.3810 3.7137 38 1 12.3291 2.4108 2.2665 39 1 15.7621 2.3557 3.5994 40 1 3.6653 0.5802 1.3643 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812536867.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:28 Heat of formation + Delta-G solvation = -72.483067 kcal Electronic energy + Delta-G solvation = -25032.005923 eV Core-core repulsion = 21039.832273 eV Total energy + Delta-G solvation = -3992.173649 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.26896 -41.41272 -40.49276 -39.78540 -36.67825 -36.31636 -35.56980 -33.97404 -33.29606 -32.55039 -31.49438 -29.74529 -27.77302 -25.89658 -24.94489 -23.84116 -22.75381 -21.86351 -21.52084 -19.65877 -19.15796 -18.75343 -18.37488 -18.07933 -17.70126 -17.17140 -16.97503 -16.71762 -16.44889 -16.19709 -16.11303 -15.80391 -15.11608 -14.98198 -14.93921 -14.35423 -14.31582 -14.23892 -13.71149 -13.41657 -13.26657 -13.10060 -12.84220 -12.57117 -12.49483 -12.18309 -11.96791 -11.93702 -11.67476 -11.37804 -11.31618 -11.07677 -10.97840 -10.60706 -10.54992 -9.63519 -9.49937 -8.17124 -6.30256 -0.65277 -0.10000 0.60462 1.25718 1.44374 1.46082 1.47014 1.57119 1.69538 1.89910 2.43214 2.62287 2.74607 3.13750 3.16640 3.50945 3.55294 3.64662 3.66506 3.89567 3.98871 4.13906 4.45157 4.51830 4.52220 4.66789 4.72083 4.79150 4.89853 5.00720 5.14794 5.38847 5.47577 5.51565 5.59114 5.63262 5.85929 6.17537 6.29133 6.34640 6.61254 6.66173 6.87957 7.03014 7.19558 7.39702 8.95259 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.033432 B = 0.001940 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.316086 B =14428.648243 C =15179.595428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.502 3.498 3 O -0.578 6.578 4 N -0.652 5.652 5 C 0.092 3.908 6 C 0.120 3.880 7 N -0.475 5.475 8 C 0.121 3.879 9 C -0.169 4.169 10 C 0.567 3.433 11 O -0.564 6.564 12 N -0.512 5.512 13 N -0.520 5.520 14 C 0.520 3.480 15 O -0.572 6.572 16 C -0.109 4.109 17 C 0.042 3.958 18 C -0.543 4.543 19 H 0.077 0.923 20 C -0.005 4.005 21 N -0.935 5.935 22 Si 0.972 3.028 23 H -0.273 1.273 24 H -0.287 1.287 25 H -0.257 1.257 26 C -0.036 4.036 27 H 0.119 0.881 28 H 0.088 0.912 29 H 0.124 0.876 30 H 0.440 0.560 31 H 0.210 0.790 32 H 0.175 0.825 33 H 0.436 0.564 34 H 0.440 0.560 35 H 0.113 0.887 36 H 0.114 0.886 37 H -0.010 1.010 38 H -0.011 1.011 39 H 0.263 0.737 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.656 -11.449 -8.211 36.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.293 3.707 3 O -0.456 6.456 4 N -0.301 5.301 5 C -0.005 4.005 6 C -0.040 4.040 7 N -0.182 5.182 8 C -0.037 4.037 9 C -0.176 4.176 10 C 0.354 3.646 11 O -0.442 6.442 12 N -0.259 5.259 13 N -0.270 5.270 14 C 0.309 3.691 15 O -0.449 6.449 16 C -0.150 4.150 17 C 0.004 3.996 18 C -0.581 4.581 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.575 5.575 22 Si 0.796 3.204 23 H -0.198 1.198 24 H -0.213 1.213 25 H -0.181 1.181 26 C -0.065 4.065 27 H 0.138 0.862 28 H 0.107 0.893 29 H 0.142 0.858 30 H 0.281 0.719 31 H 0.226 0.774 32 H 0.192 0.808 33 H 0.280 0.720 34 H 0.284 0.716 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.008 0.992 38 H 0.007 0.993 39 H 0.071 0.929 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -32.672 -11.416 -8.662 35.677 hybrid contribution 0.413 0.863 0.780 1.234 sum -32.259 -10.553 -7.882 34.845 Atomic orbital electron populations 1.21971 0.86142 1.06620 1.07361 1.22106 0.92991 0.82269 0.73336 1.90814 1.71941 1.33364 1.49472 1.43479 1.02984 1.11355 1.72290 1.18753 0.86077 0.97850 0.97847 1.23540 0.88783 0.97401 0.94304 1.67795 1.09681 1.24209 1.16545 1.23150 1.01202 0.88287 0.91071 1.20407 0.94466 0.98633 1.04128 1.18351 0.79995 0.85279 0.80969 1.90798 1.68241 1.37487 1.47711 1.44760 1.04316 1.27003 1.49829 1.45209 1.04302 1.26898 1.50640 1.21792 0.79656 0.86807 0.80814 1.90684 1.68396 1.38246 1.47543 1.21660 0.95485 0.97100 1.00738 1.18729 0.89693 0.95626 0.95557 1.21697 0.92284 1.12778 1.31357 0.90526 1.26072 0.99230 0.98079 0.96859 1.70155 1.08246 1.34685 1.44422 0.85351 0.77489 0.79234 0.78346 1.19804 1.21272 1.18112 1.21623 0.92752 0.97985 0.94124 0.86243 0.89345 0.85802 0.71870 0.77365 0.80796 0.71982 0.71613 0.86926 0.86795 0.99180 0.99254 0.92863 0.84546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.27 10.32 71.24 0.74 0.47 16 2 C 0.50 6.06 7.70 87.66 0.68 6.73 16 3 O -0.58 -14.31 14.78 -3.04 -0.04 -14.36 16 4 N -0.65 -4.66 5.35 -303.28 -1.62 -6.28 16 5 C 0.09 1.32 6.31 38.20 0.24 1.56 16 6 C 0.12 1.38 11.11 84.87 0.94 2.32 16 7 N -0.47 -8.20 10.34 -194.29 -2.01 -10.21 16 8 C 0.12 2.34 10.71 85.03 0.91 3.25 16 9 C -0.17 -3.90 5.89 -20.01 -0.12 -4.02 16 10 C 0.57 15.92 7.90 86.79 0.69 16.60 16 11 O -0.56 -19.20 16.26 -3.89 -0.06 -19.27 16 12 N -0.51 -14.22 6.21 -175.59 -1.09 -15.31 16 13 N -0.52 -15.73 6.26 -173.53 -1.09 -16.82 16 14 C 0.52 19.45 7.95 87.65 0.70 20.14 16 15 O -0.57 -25.90 15.82 -3.03 -0.05 -25.94 16 16 C -0.11 -4.19 5.64 29.85 0.17 -4.02 16 17 C 0.04 2.24 4.26 29.85 0.13 2.37 16 18 C -0.54 -30.29 9.11 25.60 0.23 -30.05 16 19 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 20 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 21 N -0.94 -58.38 13.28 21.44 0.28 -58.10 16 22 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 24 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 25 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 26 C -0.04 -0.81 8.30 22.86 0.19 -0.62 16 27 H 0.12 -0.35 8.14 -2.38 -0.02 -0.37 16 28 H 0.09 0.41 8.12 -2.39 -0.02 0.39 16 29 H 0.12 -0.51 8.14 -2.39 -0.02 -0.53 16 30 H 0.44 -1.21 8.82 -92.71 -0.82 -2.02 16 31 H 0.21 0.45 8.06 -2.91 -0.02 0.42 16 32 H 0.18 2.83 6.41 -2.91 -0.02 2.81 16 33 H 0.44 11.05 6.06 -213.32 -1.29 9.76 16 34 H 0.44 11.73 8.00 -213.32 -1.71 10.03 16 35 H 0.11 3.80 8.14 -2.38 -0.02 3.78 16 36 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 37 H -0.01 -0.62 8.10 -2.38 -0.02 -0.64 16 38 H -0.01 -0.66 8.10 -2.39 -0.02 -0.68 16 39 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 40 H 0.14 3.75 6.15 -2.91 -0.02 3.73 16 Total: -1.00 -89.57 356.25 -0.39 -89.96 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -2.69 Total: 15.32 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 5.95 Total: 14.93 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -5.52 Total: -106.71 kcal Atomic # 8 Polarization: -59.41 SS G_CDS: -0.16 Total: -59.57 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -89.57 -0.39 -89.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812536867.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.477 kcal (2) G-P(sol) polarization free energy of solvation -89.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds