Wall clock time and date at job start Tue Mar 31 2020 13:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99987 * 2 1 4 4 H 1.48499 * 109.47441 * 240.00400 * 3 2 1 5 5 H 1.48505 * 109.46790 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46958 * 119.99986 * 3 2 1 7 7 C 1.37883 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99662 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.46785 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99778 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46728 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.46983 * 65.00497 * 12 11 10 14 14 C 1.34234 * 116.99636 * 179.97438 * 13 12 11 15 15 O 1.20823 * 120.00397 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99689 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.47123 * 180.02562 * 16 14 13 18 18 H 1.08999 * 109.33869 * 55.32908 * 17 16 14 19 19 O 1.42727 * 109.33901 * 295.81556 * 17 16 14 20 20 C 1.43211 * 113.13931 * 188.05079 * 19 17 16 21 21 C 1.52979 * 108.46471 * 70.70666 * 20 19 17 22 22 C 1.50741 * 109.74876 * 310.76471 * 21 20 19 23 23 C 1.38602 * 118.75736 * 196.87537 * 22 21 20 24 24 C 1.38074 * 120.27646 * 180.24532 * 23 22 21 25 25 C 1.38262 * 119.85870 * 359.97438 * 24 23 22 26 26 C 1.38047 * 119.90030 * 359.91114 * 25 24 23 27 27 C 1.37907 * 121.35677 * 16.96069 * 22 21 20 28 28 H 0.97001 * 120.00525 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47198 * 60.00162 * 9 7 2 30 30 H 1.08997 * 109.47040 * 300.00196 * 9 7 2 31 31 H 1.09000 * 109.47187 * 300.00233 * 11 10 9 32 32 H 1.09001 * 109.46558 * 60.00281 * 11 10 9 33 33 H 1.09000 * 109.46738 * 185.00163 * 12 11 10 34 34 H 1.08994 * 109.47465 * 305.00250 * 12 11 10 35 35 H 1.09004 * 109.47582 * 300.00661 * 16 14 13 36 36 H 1.09003 * 109.46834 * 60.00651 * 16 14 13 37 37 H 1.08997 * 109.63824 * 311.01579 * 20 19 17 38 38 H 1.09003 * 109.80824 * 190.49429 * 20 19 17 39 39 H 1.09003 * 109.42065 * 190.67998 * 21 20 19 40 40 H 1.08995 * 109.38017 * 70.82103 * 21 20 19 41 41 H 1.07997 * 119.86166 * 0.21590 * 23 22 21 42 42 H 1.07999 * 120.06846 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.04808 * 179.90854 * 25 24 23 44 44 H 1.08001 * 119.84904 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6483 -5.9561 -0.0006 13 8 3.4004 -5.8883 1.2396 14 6 4.3946 -6.7760 1.3985 15 8 4.6291 -7.5826 0.5300 16 6 5.2193 -6.7659 2.6598 17 6 6.2768 -7.8691 2.5866 18 1 6.8709 -7.7402 1.6819 19 8 5.6308 -9.1412 2.5468 20 6 6.5428 -10.2393 2.6620 21 6 7.0792 -10.2755 4.0942 22 6 7.5554 -8.9025 4.4946 23 6 8.3893 -8.7805 5.5949 24 6 8.8401 -7.5374 5.9924 25 6 8.4584 -6.4097 5.2894 26 6 7.6298 -6.5306 4.1919 27 6 7.1767 -7.7782 3.7914 28 1 -0.4851 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 0.9453 -4.9822 0.8903 32 1 0.9448 -4.9826 -0.8898 33 1 2.1822 -6.9374 -0.0898 34 1 3.3212 -5.7956 -0.8429 35 1 5.7105 -5.7985 2.7650 36 1 4.5713 -6.9397 3.5189 37 1 7.3694 -10.1037 1.9646 38 1 6.0262 -11.1733 2.4407 39 1 7.9100 -10.9787 4.1524 40 1 6.2857 -10.5952 4.7697 41 1 8.6874 -9.6614 6.1440 42 1 9.4895 -7.4462 6.8505 43 1 8.8080 -5.4357 5.5985 44 1 7.3325 -5.6491 3.6432 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815209856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:04 Heat of formation + Delta-G solvation = -159.682140 kcal Electronic energy + Delta-G solvation = -26022.862889 eV Core-core repulsion = 22098.155596 eV Total energy + Delta-G solvation = -3924.707292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.92172 -39.99739 -37.84034 -37.00150 -35.94774 -34.10592 -32.76913 -32.55878 -30.62939 -29.95539 -28.77616 -26.90624 -24.90899 -24.11960 -22.80439 -22.34523 -21.84018 -20.55722 -20.33171 -17.94992 -17.29373 -16.76577 -16.64063 -16.38347 -16.22464 -15.79490 -15.46834 -15.26372 -14.78696 -14.60053 -14.33971 -14.21805 -13.91795 -13.54001 -13.46959 -13.18954 -12.93646 -12.58134 -12.40544 -12.34532 -12.05103 -11.92079 -11.67841 -11.39889 -11.26941 -10.91663 -10.91308 -10.83676 -10.73407 -10.33514 -10.28138 -10.03786 -9.87008 -9.13541 -9.10434 -8.93912 -8.86096 -8.20234 -6.11391 -4.13170 0.96336 1.03735 2.38741 2.80445 3.32208 3.34765 3.35029 3.38648 3.50157 4.26698 4.27582 4.32979 4.44467 4.52739 4.73196 4.76640 4.78504 4.87289 4.90862 5.01011 5.08996 5.16914 5.21983 5.25001 5.29487 5.29989 5.47414 5.50338 5.53144 5.62671 5.65318 5.74146 5.90677 5.96415 6.10206 6.12999 6.19311 6.22391 6.64376 6.68423 6.88209 7.06816 7.40953 7.78174 7.95135 8.13345 8.53717 8.99132 9.51442 11.00127 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.015880 B = 0.002402 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.797169 B =11652.184075 C =13146.067851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.075 3.925 13 O -0.343 6.343 14 C 0.462 3.538 15 O -0.505 6.505 16 C -0.108 4.108 17 C 0.145 3.855 18 H 0.082 0.918 19 O -0.359 6.359 20 C 0.061 3.939 21 C -0.117 4.117 22 C -0.070 4.070 23 C -0.120 4.120 24 C -0.116 4.116 25 C -0.120 4.120 26 C -0.109 4.109 27 C -0.115 4.115 28 H 0.265 0.735 29 H 0.006 0.994 30 H 0.007 0.993 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.056 0.944 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.126 0.874 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.063 -20.886 10.785 28.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.002 3.998 13 O -0.259 6.259 14 C 0.305 3.695 15 O -0.393 6.393 16 C -0.145 4.145 17 C 0.087 3.913 18 H 0.100 0.900 19 O -0.277 6.277 20 C -0.016 4.016 21 C -0.154 4.154 22 C -0.070 4.070 23 C -0.138 4.138 24 C -0.134 4.134 25 C -0.138 4.138 26 C -0.127 4.127 27 C -0.115 4.115 28 H 0.074 0.926 29 H 0.024 0.976 30 H 0.025 0.975 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.141 0.859 36 H 0.134 0.866 37 H 0.074 0.926 38 H 0.118 0.882 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.144 0.856 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.926 -20.975 10.470 28.341 hybrid contribution 0.303 0.857 0.033 0.910 sum 16.229 -20.118 10.503 27.900 Atomic orbital electron populations 1.69948 1.06101 1.27305 1.50444 1.24951 0.94990 0.99437 0.95123 0.86384 0.79306 0.81858 0.78852 1.20015 1.21151 1.19979 1.21010 0.94050 0.89318 1.50977 0.91569 1.20229 0.88754 0.83496 0.95501 1.87911 1.35322 1.12631 1.95228 1.22328 0.93324 0.85440 1.00531 1.23187 0.93622 0.98718 0.84286 1.86590 1.43584 1.54099 1.41619 1.23336 0.79415 0.78090 0.88664 1.90654 1.67804 1.37534 1.43341 1.21495 0.97201 1.00219 0.95592 1.20574 0.91555 0.84264 0.94872 0.90012 1.88151 1.32604 1.13030 1.93957 1.22587 0.93797 0.90596 0.94647 1.21179 1.01593 0.93988 0.98650 1.19497 0.97319 0.94622 0.95558 1.21065 0.98205 0.97833 0.96704 1.21154 0.99855 0.92629 0.99761 1.21145 0.98059 0.98890 0.95706 1.21167 0.97533 0.96721 0.97239 1.20128 0.99772 0.93672 0.97944 0.92571 0.97620 0.97500 0.93196 0.92003 0.90455 0.90573 0.85876 0.86643 0.92575 0.88168 0.89717 0.89561 0.85985 0.85921 0.85626 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -15.25 9.43 -34.44 -0.32 -15.57 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.19 5.35 5.69 36.01 0.20 5.56 16 10 O -0.39 -9.56 10.30 -38.80 -0.40 -9.96 16 11 C 0.06 1.15 6.33 37.16 0.24 1.38 16 12 C 0.08 1.24 5.84 37.16 0.22 1.46 16 13 O -0.34 -5.86 10.19 -42.03 -0.43 -6.29 16 14 C 0.46 7.02 7.83 36.01 0.28 7.30 16 15 O -0.51 -8.64 15.13 -24.27 -0.37 -9.01 16 16 C -0.11 -1.23 5.21 -27.88 -0.15 -1.37 16 17 C 0.15 1.62 2.28 -27.91 -0.06 1.56 16 18 H 0.08 0.95 7.96 -51.93 -0.41 0.53 16 19 O -0.36 -4.37 9.61 -50.56 -0.49 -4.86 16 20 C 0.06 0.53 6.85 37.15 0.25 0.78 16 21 C -0.12 -0.86 6.00 -27.87 -0.17 -1.03 16 22 C -0.07 -0.64 5.78 -104.59 -0.60 -1.24 16 23 C -0.12 -0.95 9.67 -39.51 -0.38 -1.33 16 24 C -0.12 -0.89 10.05 -39.63 -0.40 -1.29 16 25 C -0.12 -0.98 10.05 -39.64 -0.40 -1.38 16 26 C -0.11 -0.99 9.08 -39.50 -0.36 -1.35 16 27 C -0.11 -1.15 5.46 -104.61 -0.57 -1.72 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 34 H 0.08 1.27 8.13 -51.93 -0.42 0.84 16 35 H 0.12 1.16 6.33 -51.93 -0.33 0.83 16 36 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 0.46 8.07 -51.93 -0.42 0.05 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.13 1.01 6.46 -52.49 -0.34 0.67 16 LS Contribution 370.93 15.07 5.59 5.59 Total: -1.00 -34.77 370.93 -9.23 -44.00 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -6.54 Total: -3.41 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -2.32 Total: -6.72 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: 0.74 Total: -26.16 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -1.68 Total: -30.12 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.77 -9.23 -44.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815209856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.678 kcal (2) G-P(sol) polarization free energy of solvation -34.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds