Wall clock time and date at job start Tue Mar 31 2020 13:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99987 * 2 1 4 4 H 1.48499 * 109.47441 * 240.00400 * 3 2 1 5 5 H 1.48505 * 109.46790 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46958 * 119.99986 * 3 2 1 7 7 C 1.37883 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99662 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.46785 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99778 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46728 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.46983 * 65.00497 * 12 11 10 14 14 C 1.34234 * 116.99636 * 179.97438 * 13 12 11 15 15 O 1.20823 * 120.00397 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99689 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.47123 * 180.02562 * 16 14 13 18 18 H 1.08999 * 109.33869 * 55.32908 * 17 16 14 19 19 O 1.42727 * 109.33901 * 295.81556 * 17 16 14 20 20 C 1.43211 * 113.13931 * 188.05079 * 19 17 16 21 21 C 1.52979 * 108.46471 * 70.70666 * 20 19 17 22 22 C 1.50741 * 109.74876 * 310.76471 * 21 20 19 23 23 C 1.38602 * 118.75736 * 196.87537 * 22 21 20 24 24 C 1.38074 * 120.27646 * 180.24532 * 23 22 21 25 25 C 1.38262 * 119.85870 * 359.97438 * 24 23 22 26 26 C 1.38047 * 119.90030 * 359.91114 * 25 24 23 27 27 C 1.37907 * 121.35677 * 16.96069 * 22 21 20 28 28 H 0.97001 * 120.00525 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47198 * 60.00162 * 9 7 2 30 30 H 1.08997 * 109.47040 * 300.00196 * 9 7 2 31 31 H 1.09000 * 109.47187 * 300.00233 * 11 10 9 32 32 H 1.09001 * 109.46558 * 60.00281 * 11 10 9 33 33 H 1.09000 * 109.46738 * 185.00163 * 12 11 10 34 34 H 1.08994 * 109.47465 * 305.00250 * 12 11 10 35 35 H 1.09004 * 109.47582 * 300.00661 * 16 14 13 36 36 H 1.09003 * 109.46834 * 60.00651 * 16 14 13 37 37 H 1.08997 * 109.63824 * 311.01579 * 20 19 17 38 38 H 1.09003 * 109.80824 * 190.49429 * 20 19 17 39 39 H 1.09003 * 109.42065 * 190.67998 * 21 20 19 40 40 H 1.08995 * 109.38017 * 70.82103 * 21 20 19 41 41 H 1.07997 * 119.86166 * 0.21590 * 23 22 21 42 42 H 1.07999 * 120.06846 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.04808 * 179.90854 * 25 24 23 44 44 H 1.08001 * 119.84904 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6483 -5.9561 -0.0006 13 8 3.4004 -5.8883 1.2396 14 6 4.3946 -6.7760 1.3985 15 8 4.6291 -7.5826 0.5300 16 6 5.2193 -6.7659 2.6598 17 6 6.2768 -7.8691 2.5866 18 1 6.8709 -7.7402 1.6819 19 8 5.6308 -9.1412 2.5468 20 6 6.5428 -10.2393 2.6620 21 6 7.0792 -10.2755 4.0942 22 6 7.5554 -8.9025 4.4946 23 6 8.3893 -8.7805 5.5949 24 6 8.8401 -7.5374 5.9924 25 6 8.4584 -6.4097 5.2894 26 6 7.6298 -6.5306 4.1919 27 6 7.1767 -7.7782 3.7914 28 1 -0.4851 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 0.9453 -4.9822 0.8903 32 1 0.9448 -4.9826 -0.8898 33 1 2.1822 -6.9374 -0.0898 34 1 3.3212 -5.7956 -0.8429 35 1 5.7105 -5.7985 2.7650 36 1 4.5713 -6.9397 3.5189 37 1 7.3694 -10.1037 1.9646 38 1 6.0262 -11.1733 2.4407 39 1 7.9100 -10.9787 4.1524 40 1 6.2857 -10.5952 4.7697 41 1 8.6874 -9.6614 6.1440 42 1 9.4895 -7.4462 6.8505 43 1 8.8080 -5.4357 5.5985 44 1 7.3325 -5.6491 3.6432 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815209856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:03 Heat of formation + Delta-G solvation = -179.619335 kcal Electronic energy + Delta-G solvation = -26023.727431 eV Core-core repulsion = 22098.155596 eV Total energy + Delta-G solvation = -3925.571834 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.83060 -41.03135 -38.82206 -38.46518 -37.38314 -34.95395 -34.85721 -33.26466 -31.86067 -30.94636 -29.64389 -28.93368 -25.77778 -24.77797 -24.56007 -23.82076 -22.92137 -21.61599 -21.02967 -18.97647 -18.68577 -18.27169 -17.88745 -17.58819 -17.32566 -16.92073 -16.62627 -16.42126 -16.20644 -16.09000 -15.38677 -15.24806 -14.91036 -14.61213 -14.45845 -14.15751 -14.10720 -13.73491 -13.55579 -13.34198 -13.16070 -13.13081 -12.91401 -12.69189 -12.67383 -12.46519 -12.41918 -12.01581 -11.89746 -11.71943 -11.58110 -11.50271 -11.29348 -10.89029 -10.62756 -10.27450 -9.73561 -9.56900 -8.31952 -6.44382 0.32339 0.42771 1.18681 1.40754 1.45502 1.53896 1.64707 2.34772 2.65080 2.82227 3.01884 3.06069 3.44323 3.58508 3.77067 3.82883 3.92218 3.93762 4.05895 4.10520 4.16899 4.25856 4.30342 4.35934 4.42409 4.50439 4.58065 4.59970 4.62822 4.69174 4.77599 4.85448 4.86540 4.96248 5.06406 5.16295 5.17349 5.43731 5.49720 5.54225 5.59559 5.60273 5.94999 6.05534 6.12558 6.49530 6.72155 6.79388 7.27083 8.80067 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.015880 B = 0.002402 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.797169 B =11652.184075 C =13146.067851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.983 3.017 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.551 4.551 8 H 0.061 0.939 9 C 0.208 3.792 10 O -0.408 6.408 11 C 0.054 3.946 12 C 0.079 3.921 13 O -0.360 6.360 14 C 0.462 3.538 15 O -0.527 6.527 16 C -0.103 4.103 17 C 0.150 3.850 18 H 0.069 0.931 19 O -0.386 6.386 20 C 0.053 3.947 21 C -0.111 4.111 22 C -0.084 4.084 23 C -0.124 4.124 24 C -0.118 4.118 25 C -0.129 4.129 26 C -0.121 4.121 27 C -0.132 4.132 28 H 0.271 0.729 29 H -0.008 1.008 30 H -0.011 1.011 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.142 0.858 36 H 0.125 0.875 37 H 0.055 0.945 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.553 -20.938 12.012 29.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.588 4.588 8 H 0.079 0.921 9 C 0.133 3.867 10 O -0.328 6.328 11 C -0.023 4.023 12 C 0.005 3.995 13 O -0.277 6.277 14 C 0.306 3.694 15 O -0.417 6.417 16 C -0.140 4.140 17 C 0.092 3.908 18 H 0.087 0.913 19 O -0.305 6.305 20 C -0.024 4.024 21 C -0.148 4.148 22 C -0.084 4.084 23 C -0.142 4.142 24 C -0.136 4.136 25 C -0.147 4.147 26 C -0.139 4.139 27 C -0.132 4.132 28 H 0.080 0.920 29 H 0.009 0.991 30 H 0.007 0.993 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.123 0.877 34 H 0.090 0.910 35 H 0.159 0.841 36 H 0.143 0.857 37 H 0.073 0.927 38 H 0.132 0.868 39 H 0.126 0.874 40 H 0.107 0.893 41 H 0.162 0.838 42 H 0.164 0.836 43 H 0.160 0.840 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 17.420 -21.057 11.702 29.729 hybrid contribution -0.168 0.758 -0.336 0.845 sum 17.252 -20.300 11.366 28.964 Atomic orbital electron populations 1.70052 1.07716 1.28771 1.50328 1.25959 0.95988 1.03364 0.93872 0.85239 0.78117 0.76691 0.79400 1.19067 1.19944 1.18920 1.21357 0.94117 0.90869 1.52502 0.92066 1.19874 0.88587 0.84409 0.93859 1.87858 1.35498 1.14148 1.95324 1.22641 0.94503 0.83366 1.01775 1.23152 0.93140 0.98995 0.84173 1.86590 1.44338 1.55000 1.41774 1.24021 0.78819 0.77101 0.89457 1.90635 1.68288 1.38317 1.44428 1.21634 0.97040 1.01546 0.93769 1.20467 0.91272 0.83914 0.95149 0.91335 1.88099 1.34174 1.13987 1.94206 1.22813 0.93624 0.90146 0.95774 1.21176 1.02393 0.93761 0.97495 1.19784 0.97622 0.95038 0.95970 1.21362 0.97607 0.98906 0.96344 1.21505 0.99605 0.92349 1.00148 1.21422 0.97806 1.00049 0.95423 1.21334 0.98015 0.96694 0.97865 1.20095 1.00464 0.94585 0.98058 0.91982 0.99051 0.99299 0.92593 0.90071 0.87684 0.91031 0.84072 0.85678 0.92658 0.86798 0.87414 0.89255 0.83773 0.83635 0.84040 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.83 13.29 21.45 0.28 -55.55 16 2 C 0.01 0.39 5.46 84.66 0.46 0.86 16 3 Si 0.98 44.31 29.54 68.60 2.03 46.33 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.55 -33.05 9.43 25.60 0.24 -32.81 16 8 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 9 C 0.21 11.73 5.69 71.24 0.41 12.13 16 10 O -0.41 -20.31 10.30 -145.57 -1.50 -21.81 16 11 C 0.05 2.01 6.33 71.98 0.46 2.47 16 12 C 0.08 2.56 5.84 71.98 0.42 2.98 16 13 O -0.36 -12.33 10.19 -48.81 -0.50 -12.83 16 14 C 0.46 14.08 7.83 71.24 0.56 14.64 16 15 O -0.53 -18.21 15.13 27.25 0.41 -17.80 16 16 C -0.10 -2.34 5.21 29.85 0.16 -2.18 16 17 C 0.15 3.36 2.28 29.83 0.07 3.43 16 18 H 0.07 1.65 7.96 -2.39 -0.02 1.63 16 19 O -0.39 -9.40 9.61 -134.32 -1.29 -10.69 16 20 C 0.05 0.88 6.85 71.98 0.49 1.38 16 21 C -0.11 -1.48 6.00 29.85 0.18 -1.30 16 22 C -0.08 -1.42 5.78 -19.84 -0.11 -1.54 16 23 C -0.12 -1.70 9.67 22.32 0.22 -1.48 16 24 C -0.12 -1.55 10.05 22.24 0.22 -1.33 16 25 C -0.13 -1.91 10.05 22.23 0.22 -1.69 16 26 C -0.12 -2.11 9.08 22.32 0.20 -1.91 16 27 C -0.13 -2.56 5.46 -19.86 -0.11 -2.67 16 28 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 29 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 30 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.11 2.83 8.13 -2.39 -0.02 2.81 16 34 H 0.07 2.38 8.13 -2.39 -0.02 2.36 16 35 H 0.14 2.62 6.33 -2.38 -0.02 2.61 16 36 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.06 0.91 8.07 -2.39 -0.02 0.89 16 38 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 42 H 0.15 1.17 8.06 -2.91 -0.02 1.14 16 43 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 44 H 0.13 2.04 6.46 -2.91 -0.02 2.02 16 Total: -1.00 -74.78 370.93 4.51 -70.28 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.99 Total: 11.09 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 4.08 Total: -9.01 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.28 Total: -55.55 kcal Atomic # 8 Polarization: -60.27 SS G_CDS: -2.87 Total: -63.14 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -74.78 4.51 -70.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815209856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.344 kcal (2) G-P(sol) polarization free energy of solvation -74.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds