Wall clock time and date at job start Tue Mar 31 2020 13:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99927 * 2 1 4 4 H 1.48503 * 109.47040 * 269.99811 * 3 2 1 5 5 H 1.48487 * 109.47124 * 30.00218 * 3 2 1 6 6 H 1.48500 * 109.46721 * 150.00554 * 3 2 1 7 7 C 1.37872 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00287 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99818 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46859 * 179.97438 * 9 7 2 11 11 C 1.42901 * 113.99917 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47337 * 180.02562 * 11 10 9 13 13 O 1.45192 * 109.47109 * 65.00104 * 12 11 10 14 14 C 1.34230 * 117.00018 * 180.02562 * 13 12 11 15 15 O 1.20826 * 120.00015 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00046 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.33715 * 304.67831 * 17 16 14 19 19 O 1.42725 * 109.33973 * 64.18828 * 17 16 14 20 20 C 1.43206 * 113.14663 * 172.00612 * 19 17 16 21 21 C 1.52976 * 108.47840 * 289.33776 * 20 19 17 22 22 C 1.50748 * 109.76116 * 49.22206 * 21 20 19 23 23 C 1.38595 * 118.76217 * 163.21412 * 22 21 20 24 24 C 1.38070 * 120.27207 * 179.52796 * 23 22 21 25 25 C 1.38259 * 119.86311 * 0.02562 * 24 23 22 26 26 C 1.38057 * 119.89783 * 0.09029 * 25 24 23 27 27 C 1.37906 * 121.34649 * 342.92211 * 22 21 20 28 28 H 0.97004 * 120.00052 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47352 * 59.99677 * 9 7 2 30 30 H 1.08995 * 109.47107 * 299.99805 * 9 7 2 31 31 H 1.09008 * 109.47196 * 60.00127 * 11 10 9 32 32 H 1.09004 * 109.47486 * 300.00554 * 11 10 9 33 33 H 1.09001 * 109.46829 * 304.99670 * 12 11 10 34 34 H 1.08998 * 109.47230 * 185.00405 * 12 11 10 35 35 H 1.09002 * 109.47060 * 299.99765 * 16 14 13 36 36 H 1.09001 * 109.47380 * 59.99853 * 16 14 13 37 37 H 1.09001 * 109.63727 * 169.63943 * 20 19 17 38 38 H 1.09000 * 109.63601 * 49.02890 * 20 19 17 39 39 H 1.08995 * 109.42137 * 289.13657 * 21 20 19 40 40 H 1.08996 * 109.37355 * 169.28036 * 21 20 19 41 41 H 1.08000 * 119.86216 * 359.52172 * 23 22 21 42 42 H 1.08000 * 120.06878 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.05174 * 180.02562 * 25 24 23 44 44 H 1.08003 * 119.84706 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 8 2.1796 -3.5853 -0.0027 11 6 1.5650 -4.8754 -0.0032 12 6 2.6479 -5.9562 -0.0036 13 8 3.3991 -5.8891 1.2371 14 6 4.3938 -6.7763 1.3960 15 8 4.6287 -7.5825 0.5272 16 6 5.2168 -6.7675 2.6584 17 6 6.2744 -7.8707 2.5854 18 1 5.7863 -8.8266 2.3952 19 8 7.1811 -7.5865 1.5204 20 6 8.3095 -8.4677 1.4916 21 6 9.2111 -8.1402 2.6832 22 6 8.3861 -8.0723 3.9431 23 6 9.0319 -8.1391 5.1675 24 6 8.3077 -8.0700 6.3410 25 6 6.9326 -7.9343 6.2944 26 6 6.2883 -7.8701 5.0751 27 6 7.0142 -7.9402 3.8959 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5563 -0.8919 30 1 0.6240 -2.5574 0.8880 31 1 0.9445 -4.9819 -0.8932 32 1 0.9451 -4.9830 0.8868 33 1 3.3215 -5.7953 -0.8454 34 1 2.1819 -6.9374 -0.0937 35 1 5.7073 -5.8000 2.7656 36 1 4.5679 -6.9430 3.5164 37 1 8.8627 -8.3243 0.5634 38 1 7.9694 -9.5008 1.5628 39 1 9.6975 -7.1792 2.5163 40 1 9.9688 -8.9168 2.7876 41 1 10.1060 -8.2456 5.2039 42 1 8.8142 -8.1228 7.2934 43 1 6.3631 -7.8795 7.2105 44 1 5.2141 -7.7645 5.0396 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815209857.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:07 Heat of formation + Delta-G solvation = -159.318572 kcal Electronic energy + Delta-G solvation = -26049.382443 eV Core-core repulsion = 22124.690916 eV Total energy + Delta-G solvation = -3924.691527 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.91777 -39.99731 -37.83225 -36.99569 -35.94446 -34.10234 -32.75822 -32.55260 -30.63151 -29.95344 -28.76959 -26.89708 -24.90870 -24.10715 -22.80776 -22.33760 -21.83987 -20.55521 -20.32726 -17.94814 -17.29360 -16.76782 -16.62921 -16.36431 -16.21685 -15.78273 -15.51949 -15.21503 -14.83075 -14.51999 -14.40070 -14.15710 -13.92703 -13.54176 -13.45421 -13.17858 -12.94521 -12.56580 -12.45940 -12.29297 -12.06201 -11.89207 -11.69219 -11.39335 -11.26401 -10.89982 -10.89553 -10.82485 -10.72886 -10.32670 -10.28004 -10.02342 -9.84906 -9.11455 -9.10893 -8.94099 -8.85435 -8.19354 -6.10475 -4.11964 0.95833 1.02871 2.38293 2.80831 3.31658 3.35262 3.36454 3.42416 3.51976 4.26343 4.28454 4.34419 4.44513 4.53491 4.73051 4.75778 4.77861 4.87920 4.91908 5.02162 5.06650 5.18051 5.22094 5.26138 5.27500 5.30510 5.48012 5.51760 5.55556 5.63970 5.64905 5.74735 5.90235 5.96238 6.09031 6.13015 6.17559 6.22585 6.63484 6.68616 6.91289 7.07252 7.41561 7.79980 7.95220 8.14401 8.54807 9.00956 9.52802 11.01104 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.014752 B = 0.002381 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.585277 B =11756.497876 C =12438.943778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.390 6.390 11 C 0.062 3.938 12 C 0.075 3.925 13 O -0.343 6.343 14 C 0.462 3.538 15 O -0.505 6.505 16 C -0.108 4.108 17 C 0.146 3.854 18 H 0.081 0.919 19 O -0.357 6.357 20 C 0.061 3.939 21 C -0.118 4.118 22 C -0.068 4.068 23 C -0.119 4.119 24 C -0.116 4.116 25 C -0.121 4.121 26 C -0.109 4.109 27 C -0.115 4.115 28 H 0.264 0.736 29 H 0.006 0.994 30 H 0.007 0.993 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.832 -21.211 10.943 28.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.552 4.552 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.310 6.310 11 C -0.016 4.016 12 C 0.002 3.998 13 O -0.259 6.259 14 C 0.305 3.695 15 O -0.393 6.393 16 C -0.146 4.146 17 C 0.088 3.912 18 H 0.099 0.901 19 O -0.275 6.275 20 C -0.016 4.016 21 C -0.155 4.155 22 C -0.069 4.069 23 C -0.137 4.137 24 C -0.134 4.134 25 C -0.139 4.139 26 C -0.127 4.127 27 C -0.115 4.115 28 H 0.073 0.927 29 H 0.024 0.976 30 H 0.025 0.975 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.119 0.881 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 15.880 -21.123 10.515 28.442 hybrid contribution 0.070 0.650 0.167 0.674 sum 15.950 -20.474 10.682 28.066 Atomic orbital electron populations 1.69963 1.06100 1.27168 1.50630 1.24949 0.94991 0.99450 0.95134 0.86325 0.79696 0.82183 0.78242 1.20462 1.21074 1.19573 1.21058 0.94126 0.89305 1.50741 0.91491 1.20236 0.88755 0.83535 0.95481 1.87926 1.35275 1.12604 1.95211 1.22325 0.93291 0.85512 1.00480 1.23186 0.93634 0.98618 0.84401 1.86585 1.43483 1.54316 1.41505 1.23337 0.79036 0.78268 0.88859 1.90654 1.67254 1.38240 1.43190 1.21496 0.95766 1.02372 0.94921 1.20561 0.88857 0.97927 0.83898 0.90149 1.88189 1.34300 1.56172 1.48881 1.22601 0.87021 0.93740 0.98251 1.21191 0.98144 1.03488 0.92683 1.19512 0.92882 0.99330 0.95127 1.21074 0.99854 1.00999 0.91805 1.21148 0.94367 0.99710 0.98168 1.21126 0.94753 1.00243 0.97773 1.21124 1.00127 0.99732 0.91745 1.20133 0.93852 1.01998 0.95514 0.92654 0.97634 0.97493 0.92011 0.93253 0.90500 0.90529 0.86356 0.86159 0.88100 0.92616 0.89423 0.89709 0.85941 0.85921 0.85702 0.85436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -15.35 9.43 -34.44 -0.32 -15.68 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.19 5.38 5.69 36.01 0.20 5.58 16 10 O -0.39 -9.65 10.30 -38.80 -0.40 -10.05 16 11 C 0.06 1.15 6.33 37.16 0.24 1.38 16 12 C 0.08 1.23 5.84 37.16 0.22 1.45 16 13 O -0.34 -5.86 10.19 -42.02 -0.43 -6.29 16 14 C 0.46 7.02 7.83 36.01 0.28 7.30 16 15 O -0.51 -8.64 15.13 -24.27 -0.37 -9.01 16 16 C -0.11 -1.23 5.21 -27.88 -0.15 -1.38 16 17 C 0.15 1.62 2.29 -27.91 -0.06 1.56 16 18 H 0.08 0.89 7.96 -51.93 -0.41 0.48 16 19 O -0.36 -4.59 9.61 -50.55 -0.49 -5.07 16 20 C 0.06 0.56 6.85 37.15 0.25 0.81 16 21 C -0.12 -0.92 6.00 -27.87 -0.17 -1.09 16 22 C -0.07 -0.64 5.78 -104.59 -0.60 -1.24 16 23 C -0.12 -0.96 9.67 -39.51 -0.38 -1.34 16 24 C -0.12 -0.88 10.05 -39.64 -0.40 -1.28 16 25 C -0.12 -0.94 10.05 -39.64 -0.40 -1.34 16 26 C -0.11 -0.94 9.08 -39.50 -0.36 -1.30 16 27 C -0.11 -1.14 5.47 -104.62 -0.57 -1.71 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 34 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 35 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.12 1.01 6.33 -51.93 -0.33 0.69 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.47 8.07 -51.93 -0.42 0.05 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.13 0.87 6.45 -52.48 -0.34 0.53 16 LS Contribution 370.91 15.07 5.59 5.59 Total: -1.00 -35.27 370.91 -9.23 -44.50 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -6.54 Total: -3.66 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -2.32 Total: -6.74 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.29 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -1.68 Total: -30.42 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.27 -9.23 -44.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815209857.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.818 kcal (2) G-P(sol) polarization free energy of solvation -35.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds