Wall clock time and date at job start Tue Mar 31 2020 13:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99927 * 2 1 4 4 H 1.48503 * 109.47040 * 269.99811 * 3 2 1 5 5 H 1.48487 * 109.47124 * 30.00218 * 3 2 1 6 6 H 1.48500 * 109.46721 * 150.00554 * 3 2 1 7 7 C 1.37872 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00287 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99818 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46859 * 179.97438 * 9 7 2 11 11 C 1.42901 * 113.99917 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47337 * 180.02562 * 11 10 9 13 13 O 1.45192 * 109.47109 * 65.00104 * 12 11 10 14 14 C 1.34230 * 117.00018 * 180.02562 * 13 12 11 15 15 O 1.20826 * 120.00015 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00046 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.33715 * 304.67831 * 17 16 14 19 19 O 1.42725 * 109.33973 * 64.18828 * 17 16 14 20 20 C 1.43206 * 113.14663 * 172.00612 * 19 17 16 21 21 C 1.52976 * 108.47840 * 289.33776 * 20 19 17 22 22 C 1.50748 * 109.76116 * 49.22206 * 21 20 19 23 23 C 1.38595 * 118.76217 * 163.21412 * 22 21 20 24 24 C 1.38070 * 120.27207 * 179.52796 * 23 22 21 25 25 C 1.38259 * 119.86311 * 0.02562 * 24 23 22 26 26 C 1.38057 * 119.89783 * 0.09029 * 25 24 23 27 27 C 1.37906 * 121.34649 * 342.92211 * 22 21 20 28 28 H 0.97004 * 120.00052 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47352 * 59.99677 * 9 7 2 30 30 H 1.08995 * 109.47107 * 299.99805 * 9 7 2 31 31 H 1.09008 * 109.47196 * 60.00127 * 11 10 9 32 32 H 1.09004 * 109.47486 * 300.00554 * 11 10 9 33 33 H 1.09001 * 109.46829 * 304.99670 * 12 11 10 34 34 H 1.08998 * 109.47230 * 185.00405 * 12 11 10 35 35 H 1.09002 * 109.47060 * 299.99765 * 16 14 13 36 36 H 1.09001 * 109.47380 * 59.99853 * 16 14 13 37 37 H 1.09001 * 109.63727 * 169.63943 * 20 19 17 38 38 H 1.09000 * 109.63601 * 49.02890 * 20 19 17 39 39 H 1.08995 * 109.42137 * 289.13657 * 21 20 19 40 40 H 1.08996 * 109.37355 * 169.28036 * 21 20 19 41 41 H 1.08000 * 119.86216 * 359.52172 * 23 22 21 42 42 H 1.08000 * 120.06878 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.05174 * 180.02562 * 25 24 23 44 44 H 1.08003 * 119.84706 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 8 2.1796 -3.5853 -0.0027 11 6 1.5650 -4.8754 -0.0032 12 6 2.6479 -5.9562 -0.0036 13 8 3.3991 -5.8891 1.2371 14 6 4.3938 -6.7763 1.3960 15 8 4.6287 -7.5825 0.5272 16 6 5.2168 -6.7675 2.6584 17 6 6.2744 -7.8707 2.5854 18 1 5.7863 -8.8266 2.3952 19 8 7.1811 -7.5865 1.5204 20 6 8.3095 -8.4677 1.4916 21 6 9.2111 -8.1402 2.6832 22 6 8.3861 -8.0723 3.9431 23 6 9.0319 -8.1391 5.1675 24 6 8.3077 -8.0700 6.3410 25 6 6.9326 -7.9343 6.2944 26 6 6.2883 -7.8701 5.0751 27 6 7.0142 -7.9402 3.8959 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5563 -0.8919 30 1 0.6240 -2.5574 0.8880 31 1 0.9445 -4.9819 -0.8932 32 1 0.9451 -4.9830 0.8868 33 1 3.3215 -5.7953 -0.8454 34 1 2.1819 -6.9374 -0.0937 35 1 5.7073 -5.8000 2.7656 36 1 4.5679 -6.9430 3.5164 37 1 8.8627 -8.3243 0.5634 38 1 7.9694 -9.5008 1.5628 39 1 9.6975 -7.1792 2.5163 40 1 9.9688 -8.9168 2.7876 41 1 10.1060 -8.2456 5.2039 42 1 8.8142 -8.1228 7.2934 43 1 6.3631 -7.8795 7.2105 44 1 5.2141 -7.7645 5.0396 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815209857.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:06 Heat of formation + Delta-G solvation = -179.824064 kcal Electronic energy + Delta-G solvation = -26050.271628 eV Core-core repulsion = 22124.690916 eV Total energy + Delta-G solvation = -3925.580712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.82651 -41.02779 -38.82059 -38.46504 -37.38133 -34.95916 -34.85917 -33.26429 -31.85766 -30.94085 -29.64533 -28.93755 -25.77304 -24.78043 -24.56448 -23.81605 -22.91840 -21.61163 -21.02847 -18.97056 -18.69258 -18.26754 -17.93631 -17.50262 -17.31245 -16.98892 -16.61821 -16.38473 -16.29004 -16.03026 -15.39075 -15.24793 -14.86729 -14.67992 -14.38802 -14.19634 -14.12476 -13.73441 -13.51980 -13.37768 -13.17077 -13.09789 -12.90713 -12.71170 -12.66340 -12.48111 -12.40793 -12.01486 -11.89448 -11.71237 -11.58322 -11.49842 -11.28391 -10.89804 -10.62517 -10.27428 -9.72776 -9.56397 -8.32758 -6.44905 0.33061 0.43508 1.18580 1.40192 1.42877 1.55132 1.65669 2.34486 2.66602 2.83088 3.01075 3.06529 3.44921 3.58510 3.77055 3.83297 3.92029 3.93849 4.07291 4.11784 4.17089 4.26117 4.29587 4.34566 4.42035 4.50744 4.57869 4.60157 4.63210 4.69475 4.78234 4.85081 4.86051 4.95792 5.06946 5.16253 5.17232 5.44275 5.49892 5.53989 5.59874 5.61006 5.94747 6.06333 6.14180 6.49603 6.72569 6.79665 7.26704 8.79446 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.014752 B = 0.002381 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.585277 B =11756.497876 C =12438.943778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.982 3.018 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.266 1.266 7 C -0.551 4.551 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.410 6.410 11 C 0.053 3.947 12 C 0.078 3.922 13 O -0.360 6.360 14 C 0.462 3.538 15 O -0.527 6.527 16 C -0.103 4.103 17 C 0.149 3.851 18 H 0.075 0.925 19 O -0.390 6.390 20 C 0.053 3.947 21 C -0.113 4.113 22 C -0.086 4.086 23 C -0.126 4.126 24 C -0.119 4.119 25 C -0.128 4.128 26 C -0.119 4.119 27 C -0.132 4.132 28 H 0.272 0.728 29 H -0.008 1.008 30 H -0.009 1.009 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.151 0.849 37 H 0.110 0.890 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.014 -21.222 12.268 29.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.190 1.190 7 C -0.588 4.588 8 H 0.077 0.923 9 C 0.133 3.867 10 O -0.330 6.330 11 C -0.023 4.023 12 C 0.005 3.995 13 O -0.277 6.277 14 C 0.306 3.694 15 O -0.417 6.417 16 C -0.140 4.140 17 C 0.091 3.909 18 H 0.093 0.907 19 O -0.309 6.309 20 C -0.023 4.023 21 C -0.150 4.150 22 C -0.086 4.086 23 C -0.144 4.144 24 C -0.137 4.137 25 C -0.146 4.146 26 C -0.137 4.137 27 C -0.133 4.133 28 H 0.080 0.920 29 H 0.010 0.990 30 H 0.009 0.991 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.127 0.873 35 H 0.134 0.866 36 H 0.168 0.832 37 H 0.128 0.872 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.126 0.874 41 H 0.160 0.840 42 H 0.163 0.837 43 H 0.163 0.837 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 17.063 -21.163 11.843 29.653 hybrid contribution -0.308 0.544 -0.230 0.666 sum 16.756 -20.619 11.614 28.996 Atomic orbital electron populations 1.70056 1.07647 1.28703 1.50387 1.25938 0.95996 1.03297 0.93865 0.85195 0.78376 0.77070 0.78851 1.19299 1.19697 1.19020 1.21384 0.94046 0.90986 1.52432 0.92305 1.19875 0.88554 0.84358 0.93919 1.87870 1.35577 1.14252 1.95331 1.22657 0.94488 0.83302 1.01870 1.23159 0.93057 0.99165 0.84110 1.86585 1.44257 1.55230 1.41634 1.24031 0.78429 0.77282 0.89676 1.90635 1.67734 1.39068 1.44239 1.21654 0.95812 1.02574 0.93983 1.20516 0.88675 0.97246 0.84452 0.90739 1.88131 1.35541 1.57395 1.49836 1.22808 0.86505 0.93458 0.99507 1.21174 0.98096 1.04123 0.91565 1.19776 0.92952 0.99684 0.96185 1.21349 1.00976 1.00581 0.91464 1.21507 0.94499 0.98634 0.99063 1.21441 0.95250 0.99687 0.98214 1.21347 1.00927 0.99665 0.91726 1.20116 0.94380 1.03641 0.95132 0.91960 0.99016 0.99140 0.90070 0.92342 0.91490 0.87257 0.86584 0.83159 0.87195 0.92258 0.89671 0.87394 0.84021 0.83679 0.83736 0.84150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.92 13.29 21.45 0.28 -55.64 16 2 C 0.01 0.45 5.46 84.65 0.46 0.91 16 3 Si 0.98 44.83 29.54 68.60 2.03 46.85 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.55 -33.43 9.43 25.60 0.24 -33.19 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 9 C 0.21 11.81 5.69 71.24 0.41 12.21 16 10 O -0.41 -20.66 10.30 -145.57 -1.50 -22.16 16 11 C 0.05 1.99 6.33 71.98 0.46 2.45 16 12 C 0.08 2.55 5.84 71.98 0.42 2.97 16 13 O -0.36 -12.31 10.19 -48.77 -0.50 -12.80 16 14 C 0.46 14.03 7.83 71.24 0.56 14.59 16 15 O -0.53 -18.18 15.13 27.24 0.41 -17.76 16 16 C -0.10 -2.33 5.21 29.85 0.16 -2.17 16 17 C 0.15 3.32 2.29 29.83 0.07 3.38 16 18 H 0.07 1.68 7.96 -2.39 -0.02 1.66 16 19 O -0.39 -10.17 9.61 -134.33 -1.29 -11.46 16 20 C 0.05 0.97 6.85 71.97 0.49 1.46 16 21 C -0.11 -1.66 6.00 29.86 0.18 -1.48 16 22 C -0.09 -1.51 5.78 -19.84 -0.11 -1.62 16 23 C -0.13 -1.78 9.67 22.32 0.22 -1.57 16 24 C -0.12 -1.53 10.05 22.23 0.22 -1.31 16 25 C -0.13 -1.74 10.05 22.23 0.22 -1.52 16 26 C -0.12 -1.89 9.08 22.32 0.20 -1.69 16 27 C -0.13 -2.54 5.47 -19.86 -0.11 -2.65 16 28 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 29 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 31 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 32 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.07 2.30 8.13 -2.39 -0.02 2.28 16 34 H 0.11 2.83 8.13 -2.39 -0.02 2.81 16 35 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.15 2.36 6.33 -2.39 -0.02 2.34 16 37 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 1.00 8.07 -2.39 -0.02 0.98 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 42 H 0.15 1.14 8.06 -2.91 -0.02 1.11 16 43 H 0.14 1.31 8.06 -2.91 -0.02 1.28 16 44 H 0.14 1.70 6.45 -2.91 -0.02 1.68 16 Total: -1.00 -76.23 370.91 4.51 -71.72 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.99 Total: 10.46 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 4.08 Total: -9.21 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.28 Total: -55.64 kcal Atomic # 8 Polarization: -61.32 SS G_CDS: -2.87 Total: -64.19 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -76.23 4.51 -71.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815209857.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.099 kcal (2) G-P(sol) polarization free energy of solvation -76.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds