Wall clock time and date at job start Tue Mar 31 2020 13:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99805 * 2 1 4 4 H 1.48502 * 109.47290 * 269.99992 * 3 2 1 5 5 H 1.48505 * 109.47036 * 29.99906 * 3 2 1 6 6 H 1.48502 * 109.47127 * 149.99813 * 3 2 1 7 7 C 1.37879 * 120.00361 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99900 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99587 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.46629 * 179.97438 * 9 7 2 11 11 C 1.42907 * 113.99873 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47229 * 180.02562 * 11 10 9 13 13 O 1.45197 * 109.46997 * 65.00068 * 12 11 10 14 14 C 1.34228 * 116.99740 * 179.97438 * 13 12 11 15 15 O 1.20833 * 120.00423 * 0.02562 * 14 13 12 16 16 C 1.50706 * 120.00126 * 180.02562 * 14 13 12 17 17 H 1.09001 * 109.24765 * 60.52979 * 16 14 13 18 18 C 1.52728 * 109.25456 * 180.02562 * 16 14 13 19 19 C 1.53328 * 108.38065 * 171.38334 * 18 16 14 20 20 C 1.52734 * 108.37459 * 290.14030 * 19 18 16 21 21 C 1.50632 * 110.59068 * 51.06153 * 20 19 18 22 22 C 1.39399 * 117.75222 * 162.53155 * 21 20 19 23 23 O 1.35912 * 119.78558 * 359.71812 * 22 21 20 24 24 C 1.38432 * 120.43096 * 179.74545 * 22 21 20 25 25 C 1.38177 * 119.70327 * 359.87776 * 24 22 21 26 26 C 1.37956 * 119.83523 * 0.38701 * 25 24 22 27 27 C 1.37560 * 122.59489 * 342.31170 * 21 20 19 28 28 H 0.96995 * 119.99751 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47329 * 60.00078 * 9 7 2 30 30 H 1.08999 * 109.47129 * 299.99850 * 9 7 2 31 31 H 1.09002 * 109.46978 * 59.99970 * 11 10 9 32 32 H 1.09000 * 109.47126 * 300.00347 * 11 10 9 33 33 H 1.09001 * 109.46974 * 305.00006 * 12 11 10 34 34 H 1.09002 * 109.47070 * 185.00670 * 12 11 10 35 35 H 1.08994 * 109.68468 * 51.66022 * 18 16 14 36 36 H 1.09005 * 109.70961 * 291.11946 * 18 16 14 37 37 H 1.08993 * 109.68634 * 170.41930 * 19 18 16 38 38 H 1.09001 * 109.71292 * 49.87881 * 19 18 16 39 39 H 1.08999 * 109.25341 * 290.78191 * 20 19 18 40 40 H 1.08996 * 109.22528 * 171.33362 * 20 19 18 41 41 H 0.96705 * 113.99699 * 270.02170 * 23 22 21 42 42 H 1.08000 * 120.14806 * 179.86567 * 24 22 21 43 43 H 1.08002 * 120.07914 * 180.10115 * 25 24 22 44 44 H 1.07998 * 119.67329 * 179.77249 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 2.1798 -3.5852 -0.0017 11 6 1.5653 -4.8754 -0.0013 12 6 2.6483 -5.9561 -0.0020 13 8 3.4004 -5.8884 1.2382 14 6 4.3946 -6.7761 1.3971 15 8 4.6290 -7.5828 0.5285 16 6 5.2186 -6.7668 2.6589 17 1 4.5683 -6.9508 3.5141 18 6 6.2724 -7.8695 2.5804 19 6 7.2320 -7.7065 3.7651 20 6 8.0664 -6.4473 3.5391 21 6 7.1778 -5.2723 3.2248 22 6 7.7200 -3.9949 3.3566 23 8 9.0085 -3.8470 3.7627 24 6 6.9544 -2.8760 3.0770 25 6 5.6451 -3.0283 2.6623 26 6 5.1075 -4.2927 2.5374 27 6 5.8729 -5.4189 2.8149 28 1 -0.4849 0.8400 -0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6249 -2.5570 0.8897 31 1 0.9442 -4.9823 -0.8906 32 1 0.9461 -4.9826 0.8894 33 1 3.3212 -5.7955 -0.8443 34 1 2.1823 -6.9374 -0.0913 35 1 6.8256 -7.7828 1.6453 36 1 5.7884 -8.8449 2.6315 37 1 7.8876 -8.5748 3.8288 38 1 6.6620 -7.6084 4.6891 39 1 8.7499 -6.6138 2.7066 40 1 8.6421 -6.2320 4.4392 41 1 9.1131 -3.7774 4.7216 42 1 7.3784 -1.8883 3.1827 43 1 5.0429 -2.1596 2.4409 44 1 4.0828 -4.4086 2.2166 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815237578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:41 Heat of formation + Delta-G solvation = -165.489315 kcal Electronic energy + Delta-G solvation = -27295.737410 eV Core-core repulsion = 23370.778300 eV Total energy + Delta-G solvation = -3924.959110 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.07945 -39.80284 -37.55634 -36.96688 -36.22861 -35.55598 -32.81857 -32.24281 -30.39117 -29.99388 -28.47148 -26.97849 -24.92796 -23.02338 -22.79022 -22.37840 -21.86399 -20.90102 -19.53998 -18.34773 -17.58450 -16.82455 -16.58962 -16.29027 -15.88575 -15.72516 -15.51730 -15.10410 -14.80844 -14.44364 -14.34602 -13.98134 -13.69566 -13.47564 -13.03351 -12.91943 -12.77940 -12.57936 -12.30575 -11.99827 -11.77385 -11.61028 -11.43807 -11.31428 -11.14347 -10.96776 -10.88239 -10.83823 -10.68426 -10.39649 -10.35402 -10.20514 -10.07002 -9.16172 -8.91013 -8.63384 -8.42610 -8.24674 -6.14903 -4.16622 1.25355 1.35529 2.24906 2.72436 3.27776 3.33281 3.37656 3.67786 4.11255 4.29190 4.35949 4.48539 4.63306 4.69428 4.72793 4.85490 5.02809 5.14617 5.19891 5.22000 5.24488 5.30117 5.43628 5.44489 5.60144 5.66765 5.70793 5.80371 5.82716 5.84270 5.89417 5.96347 6.06432 6.08917 6.14936 6.46295 6.52095 6.64451 6.72962 6.94864 7.02387 7.36534 7.60015 7.74827 7.81056 8.09388 8.48737 8.95884 9.48351 10.96640 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.012387 B = 0.003967 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.878802 B = 7055.797272 C = 9087.399828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.058 3.942 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.195 3.805 10 O -0.390 6.390 11 C 0.061 3.939 12 C 0.070 3.930 13 O -0.338 6.338 14 C 0.469 3.531 15 O -0.510 6.510 16 C -0.035 4.035 17 H 0.118 0.882 18 C -0.105 4.105 19 C -0.118 4.118 20 C -0.073 4.073 21 C -0.094 4.094 22 C 0.089 3.911 23 O -0.496 6.496 24 C -0.137 4.137 25 C -0.097 4.097 26 C -0.111 4.111 27 C -0.077 4.077 28 H 0.264 0.736 29 H 0.005 0.995 30 H 0.007 0.993 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.383 0.617 42 H 0.127 0.873 43 H 0.138 0.862 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.538 -14.476 10.181 21.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.552 4.552 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.310 6.310 11 C -0.016 4.016 12 C -0.003 4.003 13 O -0.254 6.254 14 C 0.312 3.688 15 O -0.398 6.398 16 C -0.054 4.054 17 H 0.136 0.864 18 C -0.142 4.142 19 C -0.155 4.155 20 C -0.110 4.110 21 C -0.095 4.095 22 C 0.045 3.955 23 O -0.306 6.306 24 C -0.156 4.156 25 C -0.115 4.115 26 C -0.129 4.129 27 C -0.078 4.078 28 H 0.074 0.926 29 H 0.023 0.977 30 H 0.025 0.975 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.238 0.762 42 H 0.145 0.855 43 H 0.155 0.845 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 12.743 -14.566 9.288 21.467 hybrid contribution -0.191 1.031 0.246 1.077 sum 12.551 -13.536 9.534 20.776 Atomic orbital electron populations 1.69955 1.06106 1.27201 1.50478 1.24931 0.94945 0.99383 0.95111 0.86368 0.79696 0.82336 0.78297 1.20468 1.21072 1.19562 1.21022 0.94056 0.89221 1.50905 0.91495 1.20229 0.88731 0.83488 0.95474 1.87917 1.35279 1.12560 1.95227 1.22325 0.93237 0.85486 1.00591 1.23250 0.93722 0.98831 0.84517 1.86589 1.43573 1.53520 1.41696 1.23477 0.78939 0.77813 0.88606 1.90640 1.67802 1.38245 1.43137 1.19963 0.96016 0.94901 0.94478 0.86390 1.21486 0.95927 0.96846 0.99973 1.21577 0.98039 0.97738 0.98184 1.20321 0.96758 0.91835 1.02096 1.19728 0.93412 0.94398 1.01941 1.18340 0.83901 0.91553 1.01745 1.84850 1.22775 1.95376 1.27584 1.21464 0.94411 0.98402 1.01310 1.21195 0.94567 0.98328 0.97399 1.22009 1.01969 0.91548 0.97350 1.18975 0.93178 0.93378 1.02226 0.92624 0.97705 0.97509 0.91982 0.93179 0.90473 0.90396 0.90282 0.90506 0.90760 0.91319 0.90425 0.90810 0.76180 0.85477 0.84456 0.82567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 7 C -0.51 -14.70 9.43 -34.44 -0.32 -15.02 16 8 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 9 C 0.19 5.17 5.69 36.00 0.20 5.37 16 10 O -0.39 -9.04 10.30 -38.80 -0.40 -9.44 16 11 C 0.06 1.08 6.33 37.16 0.24 1.31 16 12 C 0.07 1.09 5.84 37.16 0.22 1.30 16 13 O -0.34 -5.38 7.12 -42.02 -0.30 -5.68 16 14 C 0.47 6.93 7.07 36.01 0.25 7.19 16 15 O -0.51 -8.45 15.58 -18.76 -0.29 -8.74 16 16 C -0.03 -0.41 2.69 -93.09 -0.25 -0.66 16 17 H 0.12 1.15 8.14 -51.93 -0.42 0.72 16 18 C -0.10 -1.05 4.66 -26.70 -0.12 -1.18 16 19 C -0.12 -0.94 5.98 -26.70 -0.16 -1.10 16 20 C -0.07 -0.69 5.27 -28.05 -0.15 -0.84 16 21 C -0.09 -1.16 5.75 -104.47 -0.60 -1.76 16 22 C 0.09 1.13 6.66 -39.08 -0.26 0.87 16 23 O -0.50 -5.28 12.53 -19.46 -0.24 -5.52 16 24 C -0.14 -1.87 9.98 -39.53 -0.39 -2.27 16 25 C -0.10 -1.49 10.04 -39.71 -0.40 -1.89 16 26 C -0.11 -1.73 8.94 -39.42 -0.35 -2.08 16 27 C -0.08 -1.04 5.42 -104.63 -0.57 -1.60 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.25 8.13 -51.93 -0.42 0.83 16 34 H 0.08 1.01 8.13 -51.93 -0.42 0.58 16 35 H 0.08 0.92 7.78 -51.93 -0.40 0.52 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.57 7.76 -51.93 -0.40 0.17 16 41 H 0.38 2.21 9.06 45.56 0.41 2.62 16 42 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 43 H 0.14 2.19 8.06 -52.49 -0.42 1.77 16 44 H 0.16 2.67 5.15 -52.49 -0.27 2.40 16 LS Contribution 366.39 15.07 5.52 5.52 Total: -1.00 -33.25 366.39 -8.47 -41.71 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.70 Total: 2.16 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -2.77 Total: -10.83 kcal Atomic # 7 Polarization: -26.36 SS G_CDS: 0.74 Total: -25.62 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -1.23 Total: -29.38 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.25 -8.47 -41.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815237578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.776 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds