Wall clock time and date at job start Tue Mar 31 2020 13:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99805 * 2 1 4 4 H 1.48502 * 109.47290 * 269.99992 * 3 2 1 5 5 H 1.48505 * 109.47036 * 29.99906 * 3 2 1 6 6 H 1.48502 * 109.47127 * 149.99813 * 3 2 1 7 7 C 1.37879 * 120.00361 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99900 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99587 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.46629 * 179.97438 * 9 7 2 11 11 C 1.42907 * 113.99873 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47229 * 180.02562 * 11 10 9 13 13 O 1.45197 * 109.46997 * 65.00068 * 12 11 10 14 14 C 1.34228 * 116.99740 * 179.97438 * 13 12 11 15 15 O 1.20833 * 120.00423 * 0.02562 * 14 13 12 16 16 C 1.50706 * 120.00126 * 180.02562 * 14 13 12 17 17 H 1.09001 * 109.24765 * 60.52979 * 16 14 13 18 18 C 1.52728 * 109.25456 * 180.02562 * 16 14 13 19 19 C 1.53328 * 108.38065 * 171.38334 * 18 16 14 20 20 C 1.52734 * 108.37459 * 290.14030 * 19 18 16 21 21 C 1.50632 * 110.59068 * 51.06153 * 20 19 18 22 22 C 1.39399 * 117.75222 * 162.53155 * 21 20 19 23 23 O 1.35912 * 119.78558 * 359.71812 * 22 21 20 24 24 C 1.38432 * 120.43096 * 179.74545 * 22 21 20 25 25 C 1.38177 * 119.70327 * 359.87776 * 24 22 21 26 26 C 1.37956 * 119.83523 * 0.38701 * 25 24 22 27 27 C 1.37560 * 122.59489 * 342.31170 * 21 20 19 28 28 H 0.96995 * 119.99751 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47329 * 60.00078 * 9 7 2 30 30 H 1.08999 * 109.47129 * 299.99850 * 9 7 2 31 31 H 1.09002 * 109.46978 * 59.99970 * 11 10 9 32 32 H 1.09000 * 109.47126 * 300.00347 * 11 10 9 33 33 H 1.09001 * 109.46974 * 305.00006 * 12 11 10 34 34 H 1.09002 * 109.47070 * 185.00670 * 12 11 10 35 35 H 1.08994 * 109.68468 * 51.66022 * 18 16 14 36 36 H 1.09005 * 109.70961 * 291.11946 * 18 16 14 37 37 H 1.08993 * 109.68634 * 170.41930 * 19 18 16 38 38 H 1.09001 * 109.71292 * 49.87881 * 19 18 16 39 39 H 1.08999 * 109.25341 * 290.78191 * 20 19 18 40 40 H 1.08996 * 109.22528 * 171.33362 * 20 19 18 41 41 H 0.96705 * 113.99699 * 270.02170 * 23 22 21 42 42 H 1.08000 * 120.14806 * 179.86567 * 24 22 21 43 43 H 1.08002 * 120.07914 * 180.10115 * 25 24 22 44 44 H 1.07998 * 119.67329 * 179.77249 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 2.1798 -3.5852 -0.0017 11 6 1.5653 -4.8754 -0.0013 12 6 2.6483 -5.9561 -0.0020 13 8 3.4004 -5.8884 1.2382 14 6 4.3946 -6.7761 1.3971 15 8 4.6290 -7.5828 0.5285 16 6 5.2186 -6.7668 2.6589 17 1 4.5683 -6.9508 3.5141 18 6 6.2724 -7.8695 2.5804 19 6 7.2320 -7.7065 3.7651 20 6 8.0664 -6.4473 3.5391 21 6 7.1778 -5.2723 3.2248 22 6 7.7200 -3.9949 3.3566 23 8 9.0085 -3.8470 3.7627 24 6 6.9544 -2.8760 3.0770 25 6 5.6451 -3.0283 2.6623 26 6 5.1075 -4.2927 2.5374 27 6 5.8729 -5.4189 2.8149 28 1 -0.4849 0.8400 -0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6249 -2.5570 0.8897 31 1 0.9442 -4.9823 -0.8906 32 1 0.9461 -4.9826 0.8894 33 1 3.3212 -5.7955 -0.8443 34 1 2.1823 -6.9374 -0.0913 35 1 6.8256 -7.7828 1.6453 36 1 5.7884 -8.8449 2.6315 37 1 7.8876 -8.5748 3.8288 38 1 6.6620 -7.6084 4.6891 39 1 8.7499 -6.6138 2.7066 40 1 8.6421 -6.2320 4.4392 41 1 9.1131 -3.7774 4.7216 42 1 7.3784 -1.8883 3.1827 43 1 5.0429 -2.1596 2.4409 44 1 4.0828 -4.4086 2.2166 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815237578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:40 Heat of formation + Delta-G solvation = -186.071358 kcal Electronic energy + Delta-G solvation = -27296.629914 eV Core-core repulsion = 23370.778300 eV Total energy + Delta-G solvation = -3925.851615 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.16513 -40.87744 -38.87102 -38.19455 -37.57681 -36.54938 -34.94947 -33.21259 -31.56881 -31.25358 -29.47802 -29.01387 -25.92423 -24.57213 -24.02040 -23.77471 -23.10376 -22.00013 -20.41676 -19.32702 -18.77028 -18.64018 -18.03063 -17.58205 -17.21733 -16.87117 -16.75627 -16.46349 -16.22221 -16.04213 -15.42919 -15.21422 -14.93677 -14.51385 -14.32535 -14.06553 -13.85859 -13.69107 -13.66247 -13.34698 -13.20751 -12.93045 -12.75881 -12.67807 -12.59901 -12.35813 -12.23216 -12.01563 -11.85837 -11.73027 -11.62076 -11.46446 -11.28032 -11.10003 -10.89863 -10.27183 -9.66434 -9.46492 -8.32702 -6.43995 0.19794 0.30754 1.07973 1.39036 1.40905 1.52854 1.60129 2.33072 2.63567 3.01694 3.05388 3.19009 3.42120 3.58403 3.73082 3.87640 3.90598 4.01329 4.08959 4.15711 4.25490 4.35178 4.40258 4.41340 4.47865 4.57447 4.65092 4.68700 4.85701 4.90511 4.92010 4.95778 5.01047 5.14224 5.17992 5.24098 5.34187 5.41815 5.44526 5.54133 5.55931 5.62920 5.90509 5.95302 6.49533 6.62786 6.79891 6.87361 7.27423 8.79528 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.012387 B = 0.003967 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.878802 B = 7055.797272 C = 9087.399828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.011 3.989 3 Si 0.976 3.024 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.210 3.790 10 O -0.406 6.406 11 C 0.054 3.946 12 C 0.074 3.926 13 O -0.349 6.349 14 C 0.467 3.533 15 O -0.530 6.530 16 C -0.032 4.032 17 H 0.143 0.857 18 C -0.102 4.102 19 C -0.110 4.110 20 C -0.073 4.073 21 C -0.094 4.094 22 C 0.097 3.903 23 O -0.498 6.498 24 C -0.146 4.146 25 C -0.119 4.119 26 C -0.134 4.134 27 C -0.078 4.078 28 H 0.271 0.729 29 H -0.011 1.011 30 H -0.010 1.010 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.110 0.890 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.408 0.592 42 H 0.139 0.861 43 H 0.117 0.883 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.553 -15.444 11.576 24.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.188 4.188 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.078 0.922 9 C 0.135 3.865 10 O -0.326 6.326 11 C -0.023 4.023 12 C 0.001 3.999 13 O -0.266 6.266 14 C 0.311 3.689 15 O -0.420 6.420 16 C -0.051 4.051 17 H 0.160 0.840 18 C -0.140 4.140 19 C -0.147 4.147 20 C -0.110 4.110 21 C -0.094 4.094 22 C 0.052 3.948 23 O -0.311 6.311 24 C -0.164 4.164 25 C -0.137 4.137 26 C -0.151 4.151 27 C -0.079 4.079 28 H 0.079 0.921 29 H 0.007 0.993 30 H 0.008 0.992 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.128 0.872 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.116 0.884 41 H 0.267 0.733 42 H 0.157 0.843 43 H 0.135 0.865 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.763 -15.555 10.705 23.969 hybrid contribution -0.792 1.260 -0.174 1.498 sum 13.972 -14.295 10.530 22.593 Atomic orbital electron populations 1.70053 1.07624 1.28583 1.50572 1.25862 0.95875 1.03068 0.94003 0.85288 0.78545 0.77488 0.78781 1.19519 1.19849 1.18850 1.21337 0.93991 0.90801 1.52084 0.92224 1.19842 0.88512 0.84383 0.93766 1.87874 1.35371 1.14064 1.95310 1.22630 0.94409 0.83414 1.01817 1.23208 0.93130 0.99311 0.84287 1.86623 1.44145 1.54196 1.41618 1.24115 0.78500 0.76942 0.89341 1.90622 1.68274 1.39014 1.44053 1.20160 0.96414 0.94805 0.93675 0.83955 1.21524 0.95657 0.96584 1.00212 1.21589 0.97754 0.97870 0.97508 1.20431 0.96432 0.91151 1.02970 1.20083 0.93139 0.95578 1.00648 1.18374 0.84327 0.91317 1.00787 1.84790 1.21169 1.95247 1.29917 1.21578 0.93773 0.99645 1.01400 1.21108 0.95610 0.97791 0.99177 1.21899 1.01496 0.92581 0.99166 1.19091 0.93669 0.93265 1.01854 0.92058 0.99301 0.99217 0.90268 0.92343 0.91547 0.87204 0.92200 0.89160 0.88329 0.89931 0.90718 0.88446 0.73320 0.84338 0.86497 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.33 13.29 21.45 0.28 -55.05 16 2 C 0.01 0.61 5.46 84.65 0.46 1.07 16 3 Si 0.98 44.28 29.54 68.60 2.03 46.31 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 6 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.54 -32.21 9.43 25.60 0.24 -31.96 16 8 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 9 C 0.21 11.62 5.69 71.23 0.41 12.03 16 10 O -0.41 -19.67 10.30 -145.57 -1.50 -21.17 16 11 C 0.05 1.94 6.33 71.98 0.46 2.40 16 12 C 0.07 2.30 5.84 71.98 0.42 2.72 16 13 O -0.35 -11.35 7.12 -48.75 -0.35 -11.70 16 14 C 0.47 13.71 7.07 71.24 0.50 14.22 16 15 O -0.53 -17.36 15.58 21.94 0.34 -17.02 16 16 C -0.03 -0.72 2.69 -12.39 -0.03 -0.75 16 17 H 0.14 2.48 8.14 -2.39 -0.02 2.46 16 18 C -0.10 -1.82 4.66 30.61 0.14 -1.68 16 19 C -0.11 -1.34 5.98 30.62 0.18 -1.15 16 20 C -0.07 -1.13 5.27 29.74 0.16 -0.98 16 21 C -0.09 -2.14 5.75 -19.77 -0.11 -2.26 16 22 C 0.10 2.30 6.66 22.60 0.15 2.45 16 23 O -0.50 -9.20 12.53 -92.56 -1.16 -10.36 16 24 C -0.15 -3.97 9.98 22.30 0.22 -3.75 16 25 C -0.12 -3.86 10.04 22.19 0.22 -3.64 16 26 C -0.13 -4.34 8.94 22.38 0.20 -4.14 16 27 C -0.08 -2.07 5.42 -19.87 -0.11 -2.17 16 28 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 29 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 30 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 31 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.07 2.20 8.13 -2.39 -0.02 2.18 16 34 H 0.11 2.72 8.13 -2.39 -0.02 2.70 16 35 H 0.06 1.31 7.78 -2.39 -0.02 1.29 16 36 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.08 0.83 8.10 -2.39 -0.02 0.81 16 39 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.10 1.08 7.76 -2.39 -0.02 1.06 16 41 H 0.41 3.28 9.06 -74.05 -0.67 2.60 16 42 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 43 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 44 H 0.13 4.91 5.15 -2.91 -0.01 4.90 16 Total: -1.00 -73.49 366.39 3.50 -69.99 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.34 Total: 16.60 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 3.51 Total: -17.60 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: 0.28 Total: -55.05 kcal Atomic # 8 Polarization: -57.58 SS G_CDS: -2.66 Total: -60.25 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -73.49 3.50 -69.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815237578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.086 kcal (2) G-P(sol) polarization free energy of solvation -73.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds