Wall clock time and date at job start Tue Mar 31 2020 13:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99927 * 2 1 4 4 H 1.48502 * 109.47262 * 240.00381 * 3 2 1 5 5 H 1.48505 * 109.47217 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47221 * 120.00168 * 3 2 1 7 7 C 1.37869 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00337 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00192 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47274 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.47173 * 179.97438 * 10 9 7 12 12 C 1.34229 * 117.00015 * 179.97438 * 11 10 9 13 13 O 1.20821 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.99959 * 180.02562 * 12 11 10 15 15 H 1.08995 * 109.47128 * 59.99950 * 14 12 11 16 16 C 1.52996 * 109.46936 * 180.02562 * 14 12 11 17 17 C 1.53003 * 109.46904 * 179.97438 * 16 14 12 18 18 C 1.53006 * 109.46749 * 299.99406 * 17 16 14 19 19 C 1.52995 * 109.47145 * 0.02562 * 18 17 16 20 20 C 1.52998 * 109.46825 * 299.99391 * 19 18 17 21 21 C 1.52996 * 109.47141 * 60.00359 * 20 19 18 22 22 C 1.52991 * 109.47563 * 59.99722 * 19 18 17 23 23 H 1.08996 * 109.47818 * 179.97438 * 22 19 18 24 24 C 1.53008 * 109.47066 * 59.99659 * 22 19 18 25 25 F 1.39902 * 109.46661 * 53.44737 * 24 22 19 26 26 F 1.39902 * 109.46663 * 173.44429 * 24 22 19 27 27 F 1.39891 * 109.47115 * 293.44408 * 24 22 19 28 28 H 0.97007 * 120.00097 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47005 * 60.00114 * 9 7 2 30 30 H 1.08998 * 109.47019 * 299.99829 * 9 7 2 31 31 H 1.08998 * 109.47347 * 59.99913 * 10 9 7 32 32 H 1.08999 * 109.47335 * 299.99884 * 10 9 7 33 33 H 1.09003 * 109.47456 * 299.99578 * 16 14 12 34 34 H 1.08995 * 109.47586 * 59.99709 * 17 16 14 35 35 H 1.09004 * 109.47370 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.47126 * 239.99457 * 18 17 16 37 37 H 1.09005 * 109.46646 * 120.00599 * 18 17 16 38 38 H 1.09003 * 109.46705 * 179.97438 * 19 18 17 39 39 H 1.08999 * 109.47486 * 300.00290 * 20 19 18 40 40 H 1.09003 * 109.46784 * 180.02562 * 20 19 18 41 41 H 1.08996 * 109.47072 * 239.99622 * 21 20 19 42 42 H 1.09003 * 109.47038 * 119.99582 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 8 1.5193 -4.9195 0.0001 12 6 2.2504 -6.0452 -0.0004 13 8 3.4569 -5.9820 -0.0008 14 6 1.5662 -7.3880 -0.0004 15 1 0.9431 -7.4783 -0.8901 16 6 2.6200 -8.4972 -0.0003 17 6 1.9253 -9.8605 0.0004 18 6 1.0516 -9.9870 1.2500 19 6 1.1633 -8.7080 2.0820 20 6 2.6203 -8.4958 2.4979 21 6 3.4941 -8.3692 1.2484 22 6 0.6918 -7.5147 1.2488 23 1 0.7709 -6.6035 1.8416 24 6 -0.7653 -7.7270 0.8329 25 9 -1.5402 -7.9914 1.9673 26 9 -1.2424 -6.5738 0.2006 27 9 -0.8454 -8.8097 -0.0494 28 1 -0.4851 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8897 31 1 2.8720 -3.6043 0.8894 32 1 2.8719 -3.6043 -0.8905 33 1 3.2428 -8.4069 -0.8903 34 1 1.3023 -9.9513 -0.8893 35 1 2.6760 -10.6509 -0.0001 36 1 1.3873 -10.8375 1.8435 37 1 0.0135 -10.1380 0.9537 38 1 0.5405 -8.7980 2.9721 39 1 2.9563 -9.3459 3.0916 40 1 2.6998 -7.5847 3.0910 41 1 4.2450 -9.1592 1.2486 42 1 3.9886 -7.3978 1.2477 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820475714.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:37 Heat of formation + Delta-G solvation = -278.493865 kcal Electronic energy + Delta-G solvation = -29144.717388 eV Core-core repulsion = 24673.001292 eV Total energy + Delta-G solvation = -4471.716096 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.139 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.22990 -48.67928 -48.62693 -42.45675 -40.49916 -37.71287 -35.48338 -33.60173 -32.85256 -32.15918 -31.73054 -27.76302 -26.78665 -24.47115 -23.51940 -23.13113 -22.88062 -21.91348 -19.75877 -19.42727 -19.21421 -18.86782 -18.25588 -18.04622 -17.61251 -17.04976 -16.70678 -16.57196 -16.19806 -15.58652 -15.41029 -15.20616 -15.06965 -14.94307 -14.78194 -14.69859 -14.39314 -14.07905 -13.70591 -13.48034 -13.22506 -13.16337 -13.10552 -13.01191 -12.96193 -12.90547 -12.69035 -12.58721 -12.51745 -11.94979 -11.78630 -11.59403 -11.51452 -11.41953 -10.98061 -10.88772 -10.67696 -10.61926 -8.27732 -6.41731 1.02128 1.39621 1.43863 1.50559 1.56338 1.77574 2.38770 2.70276 2.82098 2.89644 3.06554 3.34337 3.52208 3.59304 3.83284 3.87374 4.02543 4.04507 4.11070 4.19318 4.20374 4.22514 4.48483 4.50364 4.55800 4.66365 4.69354 4.74340 4.79685 5.16179 5.21914 5.24778 5.28569 5.35680 5.37057 5.40667 5.43610 5.44127 5.61515 5.74218 6.04486 6.65917 6.72563 7.28358 8.84618 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.019298 B = 0.003613 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.605177 B = 7747.424569 C = 8610.495622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.552 4.552 8 H 0.066 0.934 9 C 0.031 3.969 10 C 0.091 3.909 11 O -0.364 6.364 12 C 0.457 3.543 13 O -0.518 6.518 14 C -0.067 4.067 15 H 0.120 0.880 16 C -0.064 4.064 17 C -0.107 4.107 18 C -0.132 4.132 19 C -0.079 4.079 20 C -0.109 4.109 21 C -0.130 4.130 22 C -0.120 4.120 23 H 0.109 0.891 24 C 0.458 3.542 25 F -0.180 7.180 26 F -0.190 7.190 27 F -0.169 7.169 28 H 0.268 0.732 29 H 0.003 0.997 30 H 0.005 0.995 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.053 0.947 41 H 0.084 0.916 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.240 -24.309 3.557 24.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.589 4.589 8 H 0.084 0.916 9 C -0.006 4.006 10 C 0.018 3.982 11 O -0.281 6.281 12 C 0.301 3.699 13 O -0.407 6.407 14 C -0.086 4.086 15 H 0.138 0.862 16 C -0.082 4.082 17 C -0.144 4.144 18 C -0.169 4.169 19 C -0.098 4.098 20 C -0.146 4.146 21 C -0.167 4.167 22 C -0.140 4.140 23 H 0.127 0.873 24 C 0.404 3.596 25 F -0.161 7.161 26 F -0.171 7.171 27 F -0.150 7.150 28 H 0.077 0.923 29 H 0.022 0.978 30 H 0.023 0.977 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.404 -24.139 3.546 24.516 hybrid contribution -0.138 1.531 -0.252 1.558 sum 2.266 -22.607 3.295 22.958 Atomic orbital electron populations 1.70099 1.07885 1.28346 1.50255 1.25968 0.95806 1.03439 0.94010 0.85379 0.78190 0.77399 0.79356 1.19016 1.20517 1.18956 1.21341 0.93704 0.91180 1.52696 0.91581 1.18965 0.94340 0.90779 0.96521 1.23163 0.94955 0.78976 1.01065 1.86555 1.42711 1.15879 1.82948 1.24034 0.86536 0.87251 0.72068 1.90565 1.16201 1.88141 1.45792 1.21194 0.98910 0.88745 0.99765 0.86219 1.20941 0.94388 0.92726 1.00188 1.21555 0.99377 0.94911 0.98575 1.21956 1.01799 0.96616 0.96552 1.21175 0.98393 0.92082 0.98101 1.21542 0.92707 1.02821 0.97551 1.21802 0.98157 1.03303 0.93442 1.22499 0.87987 1.04939 0.98527 0.87267 1.20506 0.90436 0.73676 0.74982 1.93170 1.77943 1.93854 1.51152 1.93255 1.90262 1.50607 1.83020 1.93097 1.96882 1.55109 1.69959 0.92342 0.97821 0.97695 0.91971 0.92125 0.90010 0.91108 0.89053 0.88924 0.90373 0.88165 0.88552 0.92861 0.89697 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.07 13.29 21.44 0.28 -55.78 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.97 43.71 29.54 68.60 2.03 45.73 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.55 -31.44 9.11 25.60 0.23 -31.20 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.55 16 9 C 0.03 1.70 5.35 29.85 0.16 1.86 16 10 C 0.09 4.12 5.40 71.98 0.39 4.51 16 11 O -0.36 -14.65 10.03 -51.41 -0.52 -15.17 16 12 C 0.46 15.27 6.69 71.24 0.48 15.75 16 13 O -0.52 -18.83 13.41 21.98 0.29 -18.54 16 14 C -0.07 -1.62 1.99 -11.54 -0.02 -1.65 16 15 H 0.12 2.77 7.13 -2.39 -0.02 2.75 16 16 C -0.06 -1.22 2.36 -10.81 -0.03 -1.25 16 17 C -0.11 -1.42 5.35 30.60 0.16 -1.26 16 18 C -0.13 -1.69 5.13 30.59 0.16 -1.53 16 19 C -0.08 -1.27 2.54 -10.80 -0.03 -1.30 16 20 C -0.11 -1.76 5.71 30.59 0.17 -1.58 16 21 C -0.13 -2.49 5.39 30.58 0.16 -2.32 16 22 C -0.12 -2.67 1.93 -10.79 -0.02 -2.69 16 23 H 0.11 2.78 7.49 -2.39 -0.02 2.76 16 24 C 0.46 10.80 2.39 71.98 0.17 10.98 16 25 F -0.18 -4.15 16.54 44.97 0.74 -3.41 16 26 F -0.19 -5.78 17.14 44.97 0.77 -5.01 16 27 F -0.17 -3.48 12.72 44.97 0.57 -2.90 16 28 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 29 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.06 2.73 8.13 -2.39 -0.02 2.71 16 32 H 0.06 2.69 8.13 -2.39 -0.02 2.67 16 33 H 0.08 1.65 8.10 -2.39 -0.02 1.63 16 34 H 0.07 0.94 7.88 -2.39 -0.02 0.92 16 35 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 1.08 5.47 -2.38 -0.01 1.07 16 38 H 0.10 1.43 7.65 -2.39 -0.02 1.41 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.06 1.58 5.51 -2.39 -0.01 1.57 16 Total: -1.00 -65.64 337.32 7.67 -57.97 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 1.04 Total: 7.95 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 2.46 Total: -10.85 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.28 Total: -55.78 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.22 Total: -33.70 kcal Atomic # 9 Polarization: -13.41 SS G_CDS: 2.09 Total: -11.32 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -65.64 7.67 -57.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820475714.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -220.524 kcal (2) G-P(sol) polarization free energy of solvation -65.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -286.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -278.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds