Wall clock time and date at job start Tue Mar 31 2020 13:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 119.99843 * 2 1 4 4 H 1.48507 * 109.47129 * 269.99830 * 3 2 1 5 5 H 1.48496 * 109.47551 * 29.99839 * 3 2 1 6 6 H 1.48498 * 109.47097 * 150.00090 * 3 2 1 7 7 C 1.37878 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99718 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99920 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46872 * 180.02562 * 9 7 2 11 11 O 1.45199 * 109.46614 * 180.02562 * 10 9 7 12 12 C 1.34232 * 116.99879 * 180.02562 * 11 10 9 13 13 O 1.20827 * 119.99635 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00150 * 180.02562 * 12 11 10 15 15 C 1.50705 * 109.47032 * 179.97438 * 14 12 11 16 16 C 1.38160 * 120.02498 * 264.72129 * 15 14 12 17 17 C 1.38243 * 120.05616 * 179.76856 * 16 15 14 18 18 C 1.38287 * 120.10898 * 0.50973 * 17 16 15 19 19 C 1.38122 * 120.05740 * 359.74417 * 18 17 16 20 20 C 1.38711 * 120.02741 * 84.99831 * 15 14 12 21 21 O 1.35900 * 120.05635 * 359.97438 * 20 15 14 22 22 C 1.42895 * 116.99593 * 185.34089 * 21 20 15 23 23 H 1.08997 * 110.75732 * 38.41882 * 22 21 20 24 24 C 1.55312 * 110.84520 * 162.11317 * 22 21 20 25 25 C 1.54947 * 100.94176 * 152.32074 * 24 22 21 26 26 O 1.43644 * 105.13650 * 323.55775 * 25 24 22 27 27 C 1.43237 * 109.97515 * 24.42588 * 26 25 24 28 28 H 0.97001 * 120.00145 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46463 * 60.00594 * 9 7 2 30 30 H 1.08992 * 109.47277 * 300.00595 * 9 7 2 31 31 H 1.09002 * 109.46749 * 60.00706 * 10 9 7 32 32 H 1.08992 * 109.47509 * 300.00273 * 10 9 7 33 33 H 1.08999 * 109.46994 * 299.99493 * 14 12 11 34 34 H 1.08993 * 109.47045 * 59.99399 * 14 12 11 35 35 H 1.08008 * 119.97736 * 0.02562 * 16 15 14 36 36 H 1.08001 * 119.94567 * 180.25033 * 17 16 15 37 37 H 1.08003 * 119.97539 * 179.76379 * 18 17 16 38 38 H 1.07997 * 120.03072 * 180.02562 * 19 18 17 39 39 H 1.08998 * 111.12513 * 270.24047 * 24 22 21 40 40 H 1.09001 * 111.12410 * 34.40556 * 24 22 21 41 41 H 1.08997 * 110.31321 * 204.63684 * 25 24 22 42 42 H 1.09006 * 110.39496 * 82.51433 * 25 24 22 43 43 H 1.08999 * 109.83246 * 238.77805 * 27 26 25 44 44 H 1.09000 * 109.83476 * 117.80293 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6366 0.0001 11 8 5.4734 -2.6366 0.0001 12 6 6.0828 -3.8326 -0.0003 13 8 5.4247 -4.8459 -0.0002 14 6 7.5878 -3.9115 0.0003 15 6 8.0151 -5.3567 0.0003 16 6 8.3161 -5.9886 1.1915 17 6 8.7035 -7.3156 1.1927 18 6 8.8008 -8.0109 0.0013 19 6 8.5060 -7.3823 -1.1927 20 6 8.1119 -6.0519 -1.1961 21 8 7.8213 -5.4310 -2.3696 22 6 7.8285 -6.2374 -3.5492 23 1 7.4098 -7.2230 -3.3460 24 6 7.0637 -5.5345 -4.7039 25 6 7.7786 -6.1368 -5.9396 26 8 9.1558 -6.2634 -5.5515 27 6 9.2559 -6.3550 -4.1256 28 1 -0.4850 0.8400 -0.0004 29 1 3.8751 -0.6797 0.8896 30 1 3.8745 -0.6808 -0.8904 31 1 3.6578 -3.1505 -0.8897 32 1 3.6584 -3.1503 0.8902 33 1 7.9779 -3.4169 -0.8893 34 1 7.9771 -3.4178 0.8906 35 1 8.2447 -5.4466 2.1230 36 1 8.9345 -7.8090 2.1252 37 1 9.1074 -9.0466 0.0044 38 1 8.5818 -7.9258 -2.1229 39 1 6.0066 -5.7997 -4.6935 40 1 7.1960 -4.4533 -4.6617 41 1 7.6863 -5.4664 -6.7941 42 1 7.3619 -7.1149 -6.1802 43 1 9.8762 -5.5433 -3.7455 44 1 9.6895 -7.3152 -3.8462 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835267121.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:30 Heat of formation + Delta-G solvation = -148.179691 kcal Electronic energy + Delta-G solvation = -26575.406324 eV Core-core repulsion = 22651.197815 eV Total energy + Delta-G solvation = -3924.208509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.01087 -39.98130 -39.18396 -37.37747 -36.14596 -33.37101 -33.16218 -31.94790 -30.77958 -30.15575 -29.38922 -27.94989 -25.11434 -23.69526 -23.03657 -22.22285 -21.33854 -20.72052 -20.35360 -18.57115 -17.50490 -17.14693 -16.88909 -16.58100 -16.37516 -15.92692 -15.66782 -15.46440 -15.14833 -14.77853 -14.50295 -14.21556 -13.82964 -13.59545 -13.41206 -13.30728 -13.02530 -12.75075 -12.50378 -12.30889 -12.26800 -11.96603 -11.64842 -11.49110 -11.38833 -11.26114 -11.08026 -10.98398 -10.67857 -10.52445 -9.99481 -9.96314 -9.90542 -9.67611 -9.34739 -9.09971 -8.62369 -8.38897 -6.13011 -4.14088 1.04410 1.20929 2.60108 2.70988 3.12775 3.27899 3.35223 3.39912 3.47091 3.65833 3.90369 4.35880 4.38312 4.38664 4.42935 4.56041 4.66792 4.75984 4.76825 4.94327 5.04109 5.17485 5.20634 5.26416 5.27763 5.29205 5.33710 5.36582 5.46858 5.51763 5.63688 5.77853 5.99250 6.00603 6.05674 6.17791 6.29501 6.46531 6.47064 6.53997 6.84353 7.11883 7.21723 7.24123 7.62933 8.21485 8.39955 8.88721 9.46677 10.99617 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.012825 B = 0.003006 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.697996 B = 9313.421577 C =10839.102885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.084 3.916 11 O -0.363 6.363 12 C 0.459 3.541 13 O -0.509 6.509 14 C -0.069 4.069 15 C -0.100 4.100 16 C -0.066 4.066 17 C -0.155 4.155 18 C -0.078 4.078 19 C -0.209 4.209 20 C 0.144 3.856 21 O -0.294 6.294 22 C 0.053 3.947 23 H 0.092 0.908 24 C -0.151 4.151 25 C 0.052 3.948 26 O -0.377 6.377 27 C 0.030 3.970 28 H 0.266 0.734 29 H 0.028 0.972 30 H 0.023 0.977 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.131 0.869 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.419 -15.249 -5.111 27.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.047 4.047 10 C 0.011 3.989 11 O -0.280 6.280 12 C 0.302 3.698 13 O -0.397 6.397 14 C -0.106 4.106 15 C -0.101 4.101 16 C -0.084 4.084 17 C -0.173 4.173 18 C -0.096 4.096 19 C -0.228 4.228 20 C 0.099 3.901 21 O -0.208 6.208 22 C -0.004 4.004 23 H 0.109 0.891 24 C -0.189 4.189 25 C -0.024 4.024 26 O -0.297 6.297 27 C -0.047 4.047 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 22.128 -15.208 -5.296 27.368 hybrid contribution -0.072 0.500 0.117 0.518 sum 22.056 -14.709 -5.179 27.012 Atomic orbital electron populations 1.69897 1.06294 1.27204 1.50181 1.24940 0.94767 0.99196 0.94131 0.86744 0.80438 0.83241 0.78752 1.20051 1.21176 1.18728 1.20853 0.88330 0.95016 1.52313 0.90699 1.19622 0.96962 0.90238 0.97848 1.23340 0.72462 1.01444 1.01636 1.86476 1.26159 1.32269 1.83055 1.23338 0.91369 0.82134 0.72982 1.90642 1.67224 1.36646 1.45187 1.20112 0.89596 0.94403 1.06498 1.18663 1.05212 0.95293 0.90944 1.20910 0.96212 0.94760 0.96549 1.21021 1.03480 0.94582 0.98222 1.20932 0.97327 0.99519 0.91866 1.21209 1.07833 0.94139 0.99615 1.18745 0.94782 0.91279 0.85340 1.86145 1.84633 1.36985 1.13002 1.23998 0.96102 0.95741 0.84586 0.89053 1.23338 1.00896 1.02729 0.91919 1.23388 0.81197 1.00631 0.97171 1.88445 1.25581 1.95140 1.20514 1.23714 0.96738 1.02601 0.81648 0.92441 0.95390 0.95835 0.91889 0.91820 0.86755 0.86981 0.85117 0.85677 0.85748 0.85531 0.88489 0.88554 0.88711 0.91564 0.89877 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.96 55.43 0.77 -26.71 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.53 -15.11 9.66 -34.44 -0.33 -15.45 16 8 H 0.07 2.30 7.99 -52.48 -0.42 1.88 16 9 C -0.01 -0.23 4.42 -27.88 -0.12 -0.35 16 10 C 0.08 1.83 5.40 37.16 0.20 2.03 16 11 O -0.36 -7.02 10.22 -39.26 -0.40 -7.43 16 12 C 0.46 7.94 7.95 36.01 0.29 8.23 16 13 O -0.51 -10.21 15.78 -18.75 -0.30 -10.50 16 14 C -0.07 -0.85 5.67 -29.03 -0.16 -1.02 16 15 C -0.10 -1.24 4.39 -104.47 -0.46 -1.70 16 16 C -0.07 -0.71 9.67 -39.61 -0.38 -1.09 16 17 C -0.15 -1.46 10.04 -39.56 -0.40 -1.85 16 18 C -0.08 -0.71 10.04 -39.61 -0.40 -1.11 16 19 C -0.21 -2.11 8.78 -39.43 -0.35 -2.46 16 20 C 0.14 1.74 6.60 -39.22 -0.26 1.49 16 21 O -0.29 -3.59 9.02 -19.43 -0.18 -3.77 16 22 C 0.05 0.50 2.80 -24.78 -0.07 0.43 16 23 H 0.09 0.79 6.61 -51.93 -0.34 0.45 16 24 C -0.15 -1.33 6.89 -24.48 -0.17 -1.50 16 25 C 0.05 0.40 7.78 38.19 0.30 0.70 16 26 O -0.38 -3.78 11.36 -35.23 -0.40 -4.18 16 27 C 0.03 0.26 7.07 37.88 0.27 0.53 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 30 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 31 H 0.06 1.40 8.13 -51.93 -0.42 0.97 16 32 H 0.06 1.40 8.13 -51.93 -0.42 0.98 16 33 H 0.11 1.30 7.69 -51.93 -0.40 0.90 16 34 H 0.11 1.08 8.05 -51.93 -0.42 0.67 16 35 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 38 H 0.13 1.02 5.34 -52.49 -0.28 0.74 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.76 8.05 -51.93 -0.42 0.34 16 44 H 0.07 0.55 7.45 -51.93 -0.39 0.16 16 LS Contribution 368.47 15.07 5.55 5.55 Total: -1.00 -34.18 368.47 -8.16 -42.35 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.40 Total: -1.00 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -2.15 Total: -11.12 kcal Atomic # 7 Polarization: -27.49 SS G_CDS: 0.77 Total: -26.71 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -1.27 Total: -25.88 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.18 -8.16 -42.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835267121.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.832 kcal (2) G-P(sol) polarization free energy of solvation -34.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds