Wall clock time and date at job start Tue Mar 31 2020 13:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 119.99843 * 2 1 4 4 H 1.48507 * 109.47129 * 269.99830 * 3 2 1 5 5 H 1.48496 * 109.47551 * 29.99839 * 3 2 1 6 6 H 1.48498 * 109.47097 * 150.00090 * 3 2 1 7 7 C 1.37878 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99718 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99920 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46872 * 180.02562 * 9 7 2 11 11 O 1.45199 * 109.46614 * 180.02562 * 10 9 7 12 12 C 1.34232 * 116.99879 * 180.02562 * 11 10 9 13 13 O 1.20827 * 119.99635 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00150 * 180.02562 * 12 11 10 15 15 C 1.50705 * 109.47032 * 179.97438 * 14 12 11 16 16 C 1.38160 * 120.02498 * 264.72129 * 15 14 12 17 17 C 1.38243 * 120.05616 * 179.76856 * 16 15 14 18 18 C 1.38287 * 120.10898 * 0.50973 * 17 16 15 19 19 C 1.38122 * 120.05740 * 359.74417 * 18 17 16 20 20 C 1.38711 * 120.02741 * 84.99831 * 15 14 12 21 21 O 1.35900 * 120.05635 * 359.97438 * 20 15 14 22 22 C 1.42895 * 116.99593 * 185.34089 * 21 20 15 23 23 H 1.08997 * 110.75732 * 38.41882 * 22 21 20 24 24 C 1.55312 * 110.84520 * 162.11317 * 22 21 20 25 25 C 1.54947 * 100.94176 * 152.32074 * 24 22 21 26 26 O 1.43644 * 105.13650 * 323.55775 * 25 24 22 27 27 C 1.43237 * 109.97515 * 24.42588 * 26 25 24 28 28 H 0.97001 * 120.00145 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46463 * 60.00594 * 9 7 2 30 30 H 1.08992 * 109.47277 * 300.00595 * 9 7 2 31 31 H 1.09002 * 109.46749 * 60.00706 * 10 9 7 32 32 H 1.08992 * 109.47509 * 300.00273 * 10 9 7 33 33 H 1.08999 * 109.46994 * 299.99493 * 14 12 11 34 34 H 1.08993 * 109.47045 * 59.99399 * 14 12 11 35 35 H 1.08008 * 119.97736 * 0.02562 * 16 15 14 36 36 H 1.08001 * 119.94567 * 180.25033 * 17 16 15 37 37 H 1.08003 * 119.97539 * 179.76379 * 18 17 16 38 38 H 1.07997 * 120.03072 * 180.02562 * 19 18 17 39 39 H 1.08998 * 111.12513 * 270.24047 * 24 22 21 40 40 H 1.09001 * 111.12410 * 34.40556 * 24 22 21 41 41 H 1.08997 * 110.31321 * 204.63684 * 25 24 22 42 42 H 1.09006 * 110.39496 * 82.51433 * 25 24 22 43 43 H 1.08999 * 109.83246 * 238.77805 * 27 26 25 44 44 H 1.09000 * 109.83476 * 117.80293 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6366 0.0001 11 8 5.4734 -2.6366 0.0001 12 6 6.0828 -3.8326 -0.0003 13 8 5.4247 -4.8459 -0.0002 14 6 7.5878 -3.9115 0.0003 15 6 8.0151 -5.3567 0.0003 16 6 8.3161 -5.9886 1.1915 17 6 8.7035 -7.3156 1.1927 18 6 8.8008 -8.0109 0.0013 19 6 8.5060 -7.3823 -1.1927 20 6 8.1119 -6.0519 -1.1961 21 8 7.8213 -5.4310 -2.3696 22 6 7.8285 -6.2374 -3.5492 23 1 7.4098 -7.2230 -3.3460 24 6 7.0637 -5.5345 -4.7039 25 6 7.7786 -6.1368 -5.9396 26 8 9.1558 -6.2634 -5.5515 27 6 9.2559 -6.3550 -4.1256 28 1 -0.4850 0.8400 -0.0004 29 1 3.8751 -0.6797 0.8896 30 1 3.8745 -0.6808 -0.8904 31 1 3.6578 -3.1505 -0.8897 32 1 3.6584 -3.1503 0.8902 33 1 7.9779 -3.4169 -0.8893 34 1 7.9771 -3.4178 0.8906 35 1 8.2447 -5.4466 2.1230 36 1 8.9345 -7.8090 2.1252 37 1 9.1074 -9.0466 0.0044 38 1 8.5818 -7.9258 -2.1229 39 1 6.0066 -5.7997 -4.6935 40 1 7.1960 -4.4533 -4.6617 41 1 7.6863 -5.4664 -6.7941 42 1 7.3619 -7.1149 -6.1802 43 1 9.8762 -5.5433 -3.7455 44 1 9.6895 -7.3152 -3.8462 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835267121.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:29 Heat of formation + Delta-G solvation = -168.720490 kcal Electronic energy + Delta-G solvation = -26576.297040 eV Core-core repulsion = 22651.197815 eV Total energy + Delta-G solvation = -3925.099225 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.89322 -41.23797 -40.00396 -38.17888 -37.65786 -35.40535 -34.15095 -32.81563 -32.62503 -30.92162 -30.08637 -28.97106 -26.99961 -24.42954 -23.82140 -23.25444 -22.55764 -22.08649 -21.56949 -19.34363 -19.25843 -18.39118 -17.87341 -17.77354 -17.58426 -17.14874 -16.68786 -16.31370 -16.24431 -15.96921 -15.54060 -15.29747 -15.19859 -14.85162 -14.46052 -14.28513 -14.19271 -14.02066 -13.49802 -13.44814 -13.21910 -13.05969 -13.04654 -12.64102 -12.48340 -12.47946 -12.31929 -12.15935 -11.81912 -11.79976 -11.69411 -11.57734 -11.46077 -11.44381 -10.82396 -10.65933 -9.88436 -9.17800 -8.35688 -6.44135 0.25426 0.44385 1.22824 1.37744 1.39418 1.52390 1.80854 1.96921 2.33728 2.80132 2.82172 2.99138 3.21127 3.55336 3.67928 3.70350 3.82922 3.89167 3.99259 4.07936 4.14325 4.15385 4.19122 4.24406 4.32010 4.48646 4.53116 4.57234 4.60916 4.62206 4.72128 4.78580 4.79958 4.94361 4.96859 5.08320 5.27213 5.31549 5.43814 5.49268 5.55652 5.58387 5.80446 5.83699 6.14181 6.34625 6.61693 6.76741 7.21086 8.80519 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.012825 B = 0.003006 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.697996 B = 9313.421577 C =10839.102885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.012 3.988 3 Si 0.955 3.045 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.243 1.243 7 C -0.544 4.544 8 H 0.033 0.967 9 C -0.003 4.003 10 C 0.095 3.905 11 O -0.363 6.363 12 C 0.457 3.543 13 O -0.540 6.540 14 C -0.058 4.058 15 C -0.128 4.128 16 C -0.076 4.076 17 C -0.160 4.160 18 C -0.078 4.078 19 C -0.216 4.216 20 C 0.123 3.877 21 O -0.314 6.314 22 C 0.048 3.952 23 H 0.099 0.901 24 C -0.154 4.154 25 C 0.054 3.946 26 O -0.396 6.396 27 C 0.035 3.965 28 H 0.271 0.729 29 H 0.037 0.963 30 H 0.034 0.966 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.124 0.876 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.143 0.857 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.020 -15.326 -4.901 29.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.167 1.167 7 C -0.582 4.582 8 H 0.052 0.948 9 C -0.040 4.040 10 C 0.022 3.978 11 O -0.279 6.279 12 C 0.302 3.698 13 O -0.430 6.430 14 C -0.095 4.095 15 C -0.129 4.129 16 C -0.094 4.094 17 C -0.177 4.177 18 C -0.096 4.096 19 C -0.235 4.235 20 C 0.078 3.922 21 O -0.228 6.228 22 C -0.008 4.008 23 H 0.117 0.883 24 C -0.192 4.192 25 C -0.022 4.022 26 O -0.316 6.316 27 C -0.042 4.042 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.142 0.858 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.168 0.832 37 H 0.171 0.829 38 H 0.161 0.839 39 H 0.117 0.883 40 H 0.103 0.897 41 H 0.124 0.876 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 24.753 -15.304 -5.089 29.544 hybrid contribution -0.905 0.362 0.051 0.976 sum 23.848 -14.942 -5.038 28.589 Atomic orbital electron populations 1.70043 1.08349 1.28672 1.51341 1.25962 0.95681 1.03613 0.93348 0.85592 0.79556 0.77577 0.79583 1.18768 1.20500 1.16672 1.21117 0.90747 0.93769 1.52524 0.94819 1.19458 0.94139 0.91920 0.98483 1.22888 0.74447 0.99736 1.00764 1.86472 1.24214 1.33767 1.83485 1.24397 0.93163 0.80837 0.71398 1.90625 1.68277 1.37425 1.46630 1.20225 0.85348 0.95557 1.08350 1.18839 1.06865 0.95359 0.91827 1.21215 0.95936 0.95580 0.96625 1.21396 1.02624 0.94233 0.99494 1.21349 0.96061 1.00822 0.91359 1.21481 1.07470 0.93578 1.00927 1.19030 0.95569 0.92249 0.85319 1.86105 1.84921 1.38088 1.13687 1.24145 0.96789 0.95911 0.84005 0.88274 1.23363 1.01190 1.02077 0.92523 1.23512 0.80117 1.01737 0.96812 1.88416 1.26833 1.95290 1.21063 1.23690 0.96168 1.03188 0.81116 0.92008 0.94502 0.94813 0.92978 0.92653 0.85791 0.83897 0.83602 0.83227 0.82917 0.83906 0.88303 0.89747 0.87617 0.89899 0.90626 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.05 13.96 21.45 0.30 -58.75 16 2 C 0.01 0.70 5.47 84.65 0.46 1.16 16 3 Si 0.95 43.60 27.47 68.60 1.88 45.48 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 7 C -0.54 -31.90 9.66 25.60 0.25 -31.66 16 8 H 0.03 2.18 7.99 -2.91 -0.02 2.15 16 9 C 0.00 -0.12 4.42 29.85 0.13 0.01 16 10 C 0.10 4.21 5.40 71.98 0.39 4.60 16 11 O -0.36 -13.79 10.22 -51.43 -0.53 -14.32 16 12 C 0.46 15.60 7.95 71.24 0.57 16.17 16 13 O -0.54 -21.86 15.78 21.96 0.35 -21.52 16 14 C -0.06 -1.36 5.67 29.10 0.16 -1.20 16 15 C -0.13 -3.01 4.39 -19.77 -0.09 -3.10 16 16 C -0.08 -1.48 9.67 22.25 0.22 -1.26 16 17 C -0.16 -2.60 10.04 22.28 0.22 -2.38 16 18 C -0.08 -1.23 10.04 22.25 0.22 -1.00 16 19 C -0.22 -4.01 8.78 22.37 0.20 -3.81 16 20 C 0.12 2.89 6.60 22.51 0.15 3.04 16 21 O -0.31 -7.60 9.02 -92.43 -0.83 -8.43 16 22 C 0.05 0.89 2.80 31.86 0.09 0.98 16 23 H 0.10 1.63 6.61 -2.39 -0.02 1.61 16 24 C -0.15 -2.68 6.89 32.05 0.22 -2.46 16 25 C 0.05 0.77 7.78 72.65 0.56 1.34 16 26 O -0.40 -7.54 11.36 -148.98 -1.69 -9.23 16 27 C 0.04 0.59 7.07 72.45 0.51 1.10 16 28 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 29 H 0.04 1.72 7.20 -2.39 -0.02 1.70 16 30 H 0.03 1.56 7.57 -2.39 -0.02 1.55 16 31 H 0.05 2.38 8.13 -2.39 -0.02 2.37 16 32 H 0.06 2.51 8.13 -2.39 -0.02 2.49 16 33 H 0.12 2.68 7.69 -2.39 -0.02 2.66 16 34 H 0.14 2.41 8.05 -2.39 -0.02 2.39 16 35 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 37 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 38 H 0.14 2.03 5.34 -2.91 -0.02 2.01 16 39 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.11 1.25 8.14 -2.39 -0.02 1.24 16 42 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 43 H 0.08 1.36 8.05 -2.39 -0.02 1.34 16 44 H 0.09 1.19 7.45 -2.39 -0.02 1.17 16 Total: -1.00 -75.10 368.47 4.69 -70.41 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.94 Total: 14.83 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 4.27 Total: -18.47 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 0.30 Total: -58.75 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -2.70 Total: -53.50 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.48 kcal Total: -75.10 4.69 -70.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835267121.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.308 kcal (2) G-P(sol) polarization free energy of solvation -75.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds