Wall clock time and date at job start Tue Mar 31 2020 13:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00014 * 2 1 4 4 C 1.52997 * 109.47383 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47122 * 65.68271 * 4 3 2 6 6 C 1.36937 * 120.00208 * 265.17098 * 5 4 3 7 7 H 1.08001 * 119.99866 * 142.53219 * 6 5 4 8 8 C 1.38810 * 120.00175 * 322.53452 * 6 5 4 9 9 N 1.31617 * 120.00335 * 157.50014 * 8 6 5 10 10 Si 1.86803 * 119.99620 * 337.50352 * 8 6 5 11 11 H 1.48506 * 109.47211 * 95.64861 * 10 8 6 12 12 H 1.48502 * 109.47126 * 215.64144 * 10 8 6 13 13 H 1.48499 * 109.47335 * 335.64560 * 10 8 6 14 14 C 1.46506 * 119.99926 * 85.17349 * 5 4 3 15 15 N 1.46500 * 109.46547 * 270.00013 * 14 5 4 16 16 N 1.39871 * 125.46447 * 90.02967 * 15 14 5 17 17 C 1.30241 * 110.09057 * 179.97438 * 16 15 14 18 18 C 1.45930 * 107.78346 * 359.97438 * 17 16 15 19 19 C 1.39944 * 134.03713 * 180.02562 * 18 17 16 20 20 C 1.36467 * 119.64102 * 179.27359 * 19 18 17 21 21 N 1.48015 * 119.68548 * 180.17022 * 20 19 18 22 22 O 1.21803 * 119.99609 * 180.39314 * 21 20 19 23 23 O 1.21797 * 120.00170 * 0.39807 * 21 20 19 24 24 C 1.38969 * 120.62642 * 0.57360 * 20 19 18 25 25 C 1.36591 * 120.81350 * 359.64702 * 24 20 19 26 26 C 1.37043 * 125.45743 * 269.71213 * 15 14 5 27 27 H 1.08999 * 109.47355 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47230 * 299.99545 * 1 2 3 29 29 H 1.08997 * 109.47277 * 59.99755 * 1 2 3 30 30 H 1.09003 * 109.47496 * 60.00293 * 3 2 1 31 31 H 1.09008 * 109.47329 * 300.00262 * 3 2 1 32 32 H 1.09000 * 109.46907 * 305.68864 * 4 3 2 33 33 H 1.08999 * 109.47635 * 185.68337 * 4 3 2 34 34 H 0.97000 * 120.00099 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47123 * 150.00121 * 14 5 4 36 36 H 1.08996 * 109.47174 * 29.99411 * 14 5 4 37 37 H 1.07997 * 126.10940 * 180.02562 * 17 16 15 38 38 H 1.08010 * 120.17503 * 359.97438 * 19 18 17 39 39 H 1.07997 * 119.59427 * 179.61903 * 24 20 19 40 40 H 1.07998 * 120.07648 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9768 0.5794 -1.2596 6 6 4.1932 -0.7709 -1.3313 7 1 3.9266 -1.3138 -2.2261 8 6 4.7553 -1.4419 -0.2540 9 7 4.5696 -2.7376 -0.1161 10 14 5.7752 -0.5059 1.0003 11 1 4.9186 -0.1302 2.1538 12 1 6.8909 -1.3651 1.4716 13 1 6.3268 0.7218 0.3728 14 6 4.1867 1.4187 -2.4419 15 7 2.9396 1.5069 -3.2056 16 7 1.9470 2.4764 -3.0294 17 6 0.9697 2.2734 -3.8661 18 6 1.3043 1.0994 -4.6657 19 6 0.6607 0.4119 -5.7009 20 6 1.2628 -0.6747 -6.2659 21 7 0.5847 -1.4003 -7.3635 22 8 1.1136 -2.3751 -7.8670 23 8 -0.5020 -1.0225 -7.7631 24 6 2.5026 -1.1114 -5.8150 25 6 3.1483 -0.4598 -4.8030 26 6 2.5615 0.6563 -4.2114 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8506 0.5582 0.8338 33 1 3.9784 2.1753 0.1011 34 1 4.9627 -3.2066 0.6365 35 1 4.9647 0.9791 -3.0661 36 1 4.4926 2.4170 -2.1291 37 1 0.0725 2.8681 -3.9531 38 1 -0.3020 0.7463 -6.0584 39 1 2.9610 -1.9769 -6.2700 40 1 4.1117 -0.8092 -4.4622 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840154350.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:31 Heat of formation + Delta-G solvation = 62.118946 kcal Electronic energy + Delta-G solvation = -27659.593035 eV Core-core repulsion = 23673.256167 eV Total energy + Delta-G solvation = -3986.336868 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.22120 -42.31222 -39.17232 -38.41402 -37.59386 -37.36321 -34.30595 -33.53607 -31.93918 -31.43806 -30.42708 -27.97517 -27.25950 -26.67000 -24.76562 -24.36837 -23.20318 -22.86737 -21.64836 -20.17604 -19.72449 -18.83797 -18.53693 -18.38805 -17.80572 -17.30592 -17.08984 -16.59069 -16.31969 -15.90287 -15.74388 -15.47034 -15.18503 -14.88630 -14.80759 -14.46837 -14.21591 -13.65511 -13.44264 -13.23683 -12.94749 -12.74820 -12.73016 -12.51962 -12.41485 -12.26813 -12.22780 -12.19452 -11.88892 -11.76406 -11.55456 -11.42081 -10.72607 -10.47561 -10.02305 -9.35011 -9.09301 -8.19221 -5.64202 -1.04419 -0.28285 0.45369 0.47135 1.29423 1.36814 1.42897 1.50100 1.53428 2.37037 2.42358 2.93332 3.01968 3.16472 3.34226 3.47767 3.52442 3.75587 3.87580 4.07272 4.23083 4.28306 4.31743 4.40770 4.43890 4.45657 4.51976 4.56904 4.61216 4.63802 4.74679 4.76194 4.91848 5.00998 5.12769 5.34217 5.51931 5.81848 5.94649 6.14496 6.45171 6.57223 6.61902 6.82049 7.51957 7.85644 8.98506 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014859 B = 0.004517 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.953014 B = 6197.494578 C = 6796.993442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.401 6.401 3 C 0.041 3.959 4 C 0.117 3.883 5 N -0.581 5.581 6 C -0.256 4.256 7 H 0.046 0.954 8 C -0.003 4.003 9 N -0.938 5.938 10 Si 0.937 3.063 11 H -0.285 1.285 12 H -0.313 1.313 13 H -0.241 1.241 14 C 0.358 3.642 15 N -0.389 5.389 16 N -0.264 5.264 17 C 0.097 3.903 18 C -0.204 4.204 19 C 0.053 3.947 20 C -0.105 4.105 21 N 0.045 4.955 22 O -0.204 6.204 23 O -0.173 6.173 24 C -0.035 4.035 25 C -0.123 4.123 26 C 0.166 3.834 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.039 0.961 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.094 0.906 34 H 0.261 0.739 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.242 0.758 38 H 0.181 0.819 39 H 0.158 0.842 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.062 13.720 -6.042 16.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.320 6.320 3 C -0.037 4.037 4 C -0.007 4.007 5 N -0.301 5.301 6 C -0.386 4.386 7 H 0.064 0.936 8 C -0.201 4.201 9 N -0.580 5.580 10 Si 0.766 3.234 11 H -0.213 1.213 12 H -0.241 1.241 13 H -0.165 1.165 14 C 0.152 3.848 15 N -0.179 5.179 16 N -0.075 5.075 17 C -0.101 4.101 18 C -0.213 4.213 19 C 0.031 3.969 20 C -0.191 4.191 21 N 0.557 4.443 22 O -0.411 6.411 23 O -0.389 6.389 24 C -0.057 4.057 25 C -0.145 4.145 26 C 0.043 3.957 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.258 0.742 38 H 0.198 0.802 39 H 0.176 0.824 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.868 14.480 -4.304 15.871 hybrid contribution -0.185 -1.130 0.013 1.145 sum -5.053 13.350 -4.292 14.905 Atomic orbital electron populations 1.22720 0.81397 1.02223 0.99980 1.88159 1.19771 1.28756 1.95279 1.23308 0.95702 0.84405 1.00281 1.21664 0.92205 0.98064 0.88783 1.44732 1.73546 1.04795 1.07062 1.18425 1.35399 0.82399 1.02327 0.93602 1.25893 0.98821 0.95406 0.99934 1.70027 1.45393 1.10719 1.31837 0.85986 0.78399 0.79501 0.79543 1.21319 1.24149 1.16460 1.21575 0.80596 0.97096 0.85533 1.51221 1.18507 1.20554 1.27667 1.76511 0.98629 1.11603 1.20795 1.25743 0.99104 0.94256 0.90957 1.19974 0.96269 1.01847 1.03208 1.20309 0.99094 0.88329 0.89140 1.20439 0.98472 1.01887 0.98289 1.43673 1.00107 0.99796 1.00767 1.94522 1.68291 1.17986 1.60311 1.94459 1.07890 1.70871 1.65668 1.20425 0.91539 0.99190 0.94506 1.19884 1.02533 0.94841 0.97277 1.19475 0.94416 0.92003 0.89782 0.90748 0.92994 0.94279 0.93201 0.91701 0.93732 0.88795 0.93030 0.87758 0.86938 0.74237 0.80166 0.82403 0.83831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.06 11.01 113.37 1.25 2.31 16 2 O -0.40 -16.96 10.44 -148.98 -1.55 -18.51 16 3 C 0.04 1.45 6.28 71.98 0.45 1.90 16 4 C 0.12 4.38 4.77 86.38 0.41 4.79 16 5 N -0.58 -23.19 2.28 -713.75 -1.63 -24.82 16 6 C -0.26 -12.88 9.69 84.03 0.81 -12.07 16 7 H 0.05 2.59 7.42 -2.91 -0.02 2.56 16 8 C 0.00 -0.14 5.27 84.86 0.45 0.31 16 9 N -0.94 -56.15 13.97 21.65 0.30 -55.84 16 10 Si 0.94 42.31 25.05 68.60 1.72 44.03 16 11 H -0.29 -12.79 6.68 99.48 0.66 -12.12 16 12 H -0.31 -14.70 7.11 99.48 0.71 -13.99 16 13 H -0.24 -9.67 7.11 99.48 0.71 -8.96 16 14 C 0.36 11.18 6.94 170.96 1.19 12.37 16 15 N -0.39 -11.78 3.78 -349.69 -1.32 -13.10 16 16 N -0.26 -6.95 10.37 -53.09 -0.55 -7.50 16 17 C 0.10 2.01 12.28 86.92 1.07 3.08 16 18 C -0.20 -5.14 6.37 -20.24 -0.13 -5.27 16 19 C 0.05 1.25 9.56 22.27 0.21 1.47 16 20 C -0.10 -2.95 6.81 36.14 0.25 -2.71 16 21 N 0.04 1.38 4.45 -47.03 -0.21 1.17 16 22 O -0.20 -6.81 18.42 18.88 0.35 -6.47 16 23 O -0.17 -5.22 18.40 18.89 0.35 -4.88 16 24 C -0.03 -1.00 9.47 22.06 0.21 -0.79 16 25 C -0.12 -3.77 9.68 22.14 0.21 -3.55 16 26 C 0.17 5.05 6.87 39.21 0.27 5.32 16 27 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 2.14 5.86 -2.38 -0.01 2.12 16 32 H 0.04 1.92 3.52 -2.39 -0.01 1.91 16 33 H 0.09 2.79 7.96 -2.39 -0.02 2.77 16 34 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.10 3.12 8.03 -2.39 -0.02 3.10 16 36 H 0.11 2.86 7.94 -2.39 -0.02 2.84 16 37 H 0.24 2.46 8.06 -2.91 -0.02 2.44 16 38 H 0.18 3.13 7.56 -2.91 -0.02 3.11 16 39 H 0.16 4.22 7.57 -2.91 -0.02 4.20 16 40 H 0.14 4.52 7.72 -2.91 -0.02 4.50 16 Total: -1.00 -68.93 345.56 5.14 -63.79 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 1.04 Total: 15.00 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 6.65 Total: 7.14 kcal Atomic # 7 Polarization: -96.70 SS G_CDS: -3.41 Total: -100.11 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.86 Total: -29.86 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.72 Total: 44.03 kcal Total: -68.93 5.14 -63.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840154350.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.910 kcal (2) G-P(sol) polarization free energy of solvation -68.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds