Wall clock time and date at job start Tue Mar 31 2020 13:36:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86797 * 120.00183 * 2 1
4 4 H 1.48503 * 109.46903 * 94.45974 * 3 2 1
5 5 H 1.48490 * 109.47268 * 214.46045 * 3 2 1
6 6 H 1.48501 * 109.47076 * 334.46407 * 3 2 1
7 7 C 1.37879 * 119.99457 * 180.02562 * 2 1 3
8 8 H 1.07993 * 120.00794 * 6.80345 * 7 2 1
9 9 C 1.50702 * 119.99335 * 186.80709 * 7 2 1
10 10 H 1.08996 * 109.47473 * 326.93966 * 9 7 2
11 11 C 1.53003 * 109.47097 * 206.93979 * 9 7 2
12 12 C 1.50701 * 109.47169 * 64.99943 * 11 9 7
13 13 O 1.20834 * 119.99659 * 0.02562 * 12 11 9
14 14 O 1.34221 * 120.00302 * 179.97438 * 12 11 9
15 15 C 1.45203 * 117.00306 * 180.02562 * 14 12 11
16 16 C 1.53003 * 109.47232 * 180.02562 * 15 14 12
17 17 O 1.42903 * 110.45382 * 62.39851 * 16 15 14
18 18 C 1.54506 * 110.51017 * 184.99765 * 16 15 14
19 19 C 1.54484 * 104.06016 * 118.64570 * 18 16 15
20 20 O 1.44430 * 104.80328 * 23.97861 * 19 18 16
21 21 C 1.44430 * 105.27355 * 319.48938 * 20 19 18
22 22 C 1.50700 * 109.47335 * 86.94382 * 9 7 2
23 23 C 1.38227 * 120.00011 * 58.06866 * 22 9 7
24 24 C 1.38243 * 119.99919 * 179.79310 * 23 22 9
25 25 C 1.38231 * 119.99940 * 0.43840 * 24 23 22
26 26 C 1.38243 * 120.00261 * 359.82080 * 25 24 23
27 27 C 1.38234 * 119.99791 * 238.35186 * 22 9 7
28 28 H 0.97001 * 120.00229 * 359.97438 * 1 2 3
29 29 H 1.08991 * 109.47379 * 185.00079 * 11 9 7
30 30 H 1.09002 * 109.46862 * 305.00353 * 11 9 7
31 31 H 1.08994 * 109.46988 * 300.00428 * 15 14 12
32 32 H 1.09002 * 109.46843 * 60.00224 * 15 14 12
33 33 H 0.96707 * 113.99959 * 300.69807 * 17 16 15
34 34 H 1.08993 * 110.51505 * 237.29037 * 18 16 15
35 35 H 1.08997 * 110.51194 * 0.02562 * 18 16 15
36 36 H 1.08997 * 110.37532 * 142.80982 * 19 18 16
37 37 H 1.09002 * 110.37489 * 265.03932 * 19 18 16
38 38 H 1.09001 * 110.36829 * 281.67908 * 21 20 19
39 39 H 1.09000 * 110.36967 * 159.34023 * 21 20 19
40 40 H 1.07996 * 120.00385 * 0.02562 * 23 22 9
41 41 H 1.07996 * 120.00022 * 180.28249 * 24 23 22
42 42 H 1.08004 * 120.00155 * 179.83340 * 25 24 23
43 43 H 1.07995 * 120.00246 * 179.97438 * 26 25 24
44 44 H 1.08000 * 120.00480 * 359.97362 * 27 22 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.5910 1.9919 1.3959
5 1 3.4964 1.4692 -0.7922
6 1 1.4027 2.6780 -0.6035
7 6 2.0045 -1.1941 -0.0005
8 1 1.4702 -2.1261 -0.1117
9 6 3.5035 -1.1988 0.1542
10 1 3.9199 -0.3067 -0.3137
11 6 4.0819 -2.4450 -0.5192
12 6 3.8345 -2.3743 -2.0041
13 8 3.2555 -1.4242 -2.4755
14 8 4.2583 -3.3660 -2.8031
15 6 3.9859 -3.2308 -4.2229
16 6 4.5387 -4.4483 -4.9665
17 8 3.8856 -5.6409 -4.5269
18 6 4.3734 -4.2716 -6.4925
19 6 5.8207 -4.2957 -7.0321
20 8 6.5742 -5.0200 -6.0353
21 6 6.0662 -4.5582 -4.7646
22 6 3.8574 -1.2094 1.6190
23 6 3.4018 -2.2297 2.4327
24 6 3.7299 -2.2417 3.7755
25 6 4.5061 -1.2286 4.3064
26 6 4.9573 -0.2053 3.4938
27 6 4.6327 -0.1956 2.1501
28 1 -0.4850 0.8400 0.0004
29 1 5.1543 -2.4948 -0.3315
30 1 3.6001 -3.3343 -0.1126
31 1 2.9095 -3.1663 -4.3818
32 1 4.4636 -2.3265 -4.5999
33 1 3.9823 -5.8165 -3.5809
34 1 3.7956 -5.0951 -6.9120
35 1 3.8982 -3.3167 -6.7172
36 1 5.8602 -4.8154 -7.9894
37 1 6.2038 -3.2805 -7.1362
38 1 6.4877 -3.5834 -4.5191
39 1 6.2943 -5.2797 -3.9800
40 1 2.7926 -3.0195 2.0187
41 1 3.3778 -3.0413 4.4103
42 1 4.7603 -1.2365 5.3561
43 1 5.5634 0.5865 3.9086
44 1 4.9852 0.6038 1.5152
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000842378422.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:36:11
Heat of formation + Delta-G solvation = -157.023527 kcal
Electronic energy + Delta-G solvation = -27112.156768 eV
Core-core repulsion = 23187.564761 eV
Total energy + Delta-G solvation = -3924.592006 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.150 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-40.45969 -39.56950 -38.61441 -36.64986 -35.69132 -34.23561 -32.00779 -31.77609
-30.28335 -29.74335 -29.08081 -26.73229 -25.62087 -23.32825 -22.74421 -21.96004
-20.82675 -20.69166 -19.28603 -17.49818 -17.22397 -17.09258 -16.63939 -16.33962
-16.08042 -15.92469 -15.30176 -15.09371 -14.50876 -14.31560 -13.94700 -13.81343
-13.45233 -13.08354 -12.88004 -12.77791 -12.70542 -12.48348 -12.28067 -12.17280
-11.91162 -11.82504 -11.70696 -11.29679 -11.15888 -10.89116 -10.60771 -10.48074
-10.42598 -10.36741 -10.05500 -9.81509 -9.77573 -9.62438 -9.22993 -8.57230
-8.27709 -7.91604 -6.10278 -4.08353 2.02489 2.06845 2.89162 2.95106
3.32430 3.38111 3.39026 3.67200 3.87752 4.27201 4.42327 4.44589
4.47723 4.60814 4.81650 4.93256 5.17717 5.23281 5.31957 5.37751
5.43667 5.45678 5.47308 5.49526 5.56530 5.61233 5.68195 5.76336
5.79342 5.85782 5.96833 6.15286 6.22867 6.37380 6.44950 6.60376
6.71928 6.87161 6.89873 7.07929 7.18112 7.46828 7.47500 7.60099
7.71991 8.38063 8.43948 8.88188 9.52819 11.02417
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.015135 B = 0.003474 C = 0.003117
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1849.587702 B = 8058.054319 C = 8982.175921
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.086 3.914
3 Si 0.867 3.133
4 H -0.272 1.272
5 H -0.262 1.262
6 H -0.290 1.290
7 C -0.493 4.493
8 H 0.074 0.926
9 C 0.045 3.955
10 H 0.055 0.945
11 C -0.087 4.087
12 C 0.459 3.541
13 O -0.468 6.468
14 O -0.374 6.374
15 C 0.044 3.956
16 C 0.109 3.891
17 O -0.546 6.546
18 C -0.144 4.144
19 C 0.045 3.955
20 O -0.371 6.371
21 C 0.026 3.974
22 C -0.041 4.041
23 C -0.100 4.100
24 C -0.125 4.125
25 C -0.147 4.147
26 C -0.124 4.124
27 C -0.137 4.137
28 H 0.264 0.736
29 H 0.083 0.917
30 H 0.098 0.902
31 H 0.082 0.918
32 H 0.076 0.924
33 H 0.387 0.613
34 H 0.096 0.904
35 H 0.091 0.909
36 H 0.096 0.904
37 H 0.063 0.937
38 H 0.071 0.929
39 H 0.102 0.898
40 H 0.121 0.879
41 H 0.112 0.888
42 H 0.109 0.891
43 H 0.109 0.891
44 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.258 -7.392 -5.473 15.325
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.531 5.531
2 C -0.117 4.117
3 Si 0.695 3.305
4 H -0.198 1.198
5 H -0.187 1.187
6 H -0.216 1.216
7 C -0.530 4.530
8 H 0.092 0.908
9 C 0.026 3.974
10 H 0.073 0.927
11 C -0.124 4.124
12 C 0.301 3.699
13 O -0.350 6.350
14 O -0.294 6.294
15 C -0.030 4.030
16 C 0.067 3.933
17 O -0.353 6.353
18 C -0.182 4.182
19 C -0.032 4.032
20 O -0.289 6.289
21 C -0.051 4.051
22 C -0.042 4.042
23 C -0.118 4.118
24 C -0.144 4.144
25 C -0.165 4.165
26 C -0.142 4.142
27 C -0.156 4.156
28 H 0.074 0.926
29 H 0.101 0.899
30 H 0.116 0.884
31 H 0.100 0.900
32 H 0.095 0.905
33 H 0.236 0.764
34 H 0.114 0.886
35 H 0.110 0.890
36 H 0.114 0.886
37 H 0.081 0.919
38 H 0.089 0.911
39 H 0.120 0.880
40 H 0.139 0.861
41 H 0.130 0.870
42 H 0.127 0.873
43 H 0.128 0.872
44 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges 11.891 -7.152 -6.328 15.251
hybrid contribution 0.039 1.424 0.629 1.557
sum 11.929 -5.728 -5.699 14.408
Atomic orbital electron populations
1.69887 1.06325 1.27027 1.49895 1.24874 0.94516 0.98802 0.93524
0.86967 0.80672 0.84146 0.78734 1.19765 1.18713 1.21645 1.20619
0.87759 0.94764 1.49896 0.90836 1.18315 0.98257 0.93656 0.87207
0.92699 1.21430 1.01743 1.03137 0.86120 1.23937 0.75913 0.79839
0.90261 1.90719 1.35643 1.32780 1.75906 1.86428 1.75120 1.49021
1.18806 1.23618 1.02383 0.97987 0.79044 1.22569 0.92077 0.84534
0.94121 1.86515 1.76470 1.41741 1.30590 1.22936 0.98838 1.04431
0.91947 1.23450 0.89285 0.97178 0.93262 1.89150 1.60398 1.64131
1.15262 1.24119 0.92358 1.01071 0.87541 1.20633 0.92043 0.92971
0.98518 1.20961 0.98724 0.99147 0.92952 1.21069 0.99072 0.98638
0.95579 1.20886 1.00843 0.95895 0.98897 1.20962 1.00821 0.98388
0.94045 1.21048 1.00007 0.99236 0.95268 0.92643 0.89919 0.88424
0.90014 0.90539 0.76383 0.88568 0.89033 0.88566 0.91861 0.91124
0.87993 0.86113 0.87026 0.87291 0.87250 0.87339
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -27.18 13.96 55.43 0.77 -26.41 16
2 C 0.09 2.45 5.47 -17.82 -0.10 2.35 16
3 Si 0.87 21.90 26.57 -169.99 -4.52 17.38 16
4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16
5 H -0.26 -6.40 6.29 56.52 0.36 -6.05 16
6 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16
7 C -0.49 -13.06 6.98 -34.44 -0.24 -13.30 16
8 H 0.07 2.11 8.06 -52.49 -0.42 1.68 16
9 C 0.04 0.97 1.21 -92.92 -0.11 0.86 16
10 H 0.06 1.28 4.88 -51.93 -0.25 1.03 16
11 C -0.09 -1.53 5.04 -27.88 -0.14 -1.67 16
12 C 0.46 8.60 7.71 36.01 0.28 8.87 16
13 O -0.47 -10.69 14.73 -18.76 -0.28 -10.97 16
14 O -0.37 -5.63 9.55 -42.21 -0.40 -6.03 16
15 C 0.04 0.60 4.32 37.16 0.16 0.76 16
16 C 0.11 1.24 1.26 -89.05 -0.11 1.12 16
17 O -0.55 -6.65 13.00 -39.62 -0.52 -7.17 16
18 C -0.14 -1.38 6.54 -25.16 -0.16 -1.54 16
19 C 0.05 0.40 7.63 37.94 0.29 0.69 16
20 O -0.37 -4.41 11.65 -35.23 -0.41 -4.82 16
21 C 0.03 0.29 6.65 37.93 0.25 0.54 16
22 C -0.04 -0.83 4.52 -104.63 -0.47 -1.30 16
23 C -0.10 -1.87 8.86 -39.58 -0.35 -2.22 16
24 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16
25 C -0.15 -2.32 10.05 -39.58 -0.40 -2.72 16
26 C -0.12 -2.07 10.05 -39.58 -0.40 -2.47 16
27 C -0.14 -2.61 9.06 -39.58 -0.36 -2.97 16
28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16
29 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16
30 H 0.10 1.60 7.68 -51.93 -0.40 1.21 16
31 H 0.08 1.21 8.13 -51.93 -0.42 0.79 16
32 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16
33 H 0.39 3.78 8.74 45.56 0.40 4.18 16
34 H 0.10 0.93 8.00 -51.93 -0.42 0.52 16
35 H 0.09 0.76 7.73 -51.93 -0.40 0.36 16
36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16
37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16
38 H 0.07 0.73 7.87 -51.93 -0.41 0.33 16
39 H 0.10 1.03 8.09 -51.93 -0.42 0.61 16
40 H 0.12 2.20 7.71 -52.49 -0.40 1.80 16
41 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16
42 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16
43 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16
44 H 0.11 1.99 7.89 -52.49 -0.41 1.58 16
LS Contribution 365.18 15.07 5.50 5.50
Total: -1.00 -33.25 365.18 -7.81 -41.06
By element:
Atomic # 1 Polarization: 12.60 SS G_CDS: -5.70 Total: 6.90 kcal
Atomic # 6 Polarization: -13.19 SS G_CDS: -2.26 Total: -15.45 kcal
Atomic # 7 Polarization: -27.18 SS G_CDS: 0.77 Total: -26.41 kcal
Atomic # 8 Polarization: -27.38 SS G_CDS: -1.61 Total: -28.98 kcal
Atomic # 14 Polarization: 21.90 SS G_CDS: -4.52 Total: 17.38 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -33.25 -7.81 -41.06 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000842378422.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -115.964 kcal
(2) G-P(sol) polarization free energy of solvation -33.247 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.211 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.059 kcal
(6) G-S(sol) free energy of system = (1) + (5) -157.024 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds