Wall clock time and date at job start Tue Mar 31 2020 13:36:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86797 * 120.00183 * 2 1
4 4 H 1.48503 * 109.46903 * 94.45974 * 3 2 1
5 5 H 1.48490 * 109.47268 * 214.46045 * 3 2 1
6 6 H 1.48501 * 109.47076 * 334.46407 * 3 2 1
7 7 C 1.37879 * 119.99457 * 180.02562 * 2 1 3
8 8 H 1.07993 * 120.00794 * 6.80345 * 7 2 1
9 9 C 1.50702 * 119.99335 * 186.80709 * 7 2 1
10 10 H 1.08996 * 109.47473 * 326.93966 * 9 7 2
11 11 C 1.53003 * 109.47097 * 206.93979 * 9 7 2
12 12 C 1.50701 * 109.47169 * 64.99943 * 11 9 7
13 13 O 1.20834 * 119.99659 * 0.02562 * 12 11 9
14 14 O 1.34221 * 120.00302 * 179.97438 * 12 11 9
15 15 C 1.45203 * 117.00306 * 180.02562 * 14 12 11
16 16 C 1.53003 * 109.47232 * 180.02562 * 15 14 12
17 17 O 1.42903 * 110.45382 * 62.39851 * 16 15 14
18 18 C 1.54506 * 110.51017 * 184.99765 * 16 15 14
19 19 C 1.54484 * 104.06016 * 118.64570 * 18 16 15
20 20 O 1.44430 * 104.80328 * 23.97861 * 19 18 16
21 21 C 1.44430 * 105.27355 * 319.48938 * 20 19 18
22 22 C 1.50700 * 109.47335 * 86.94382 * 9 7 2
23 23 C 1.38227 * 120.00011 * 58.06866 * 22 9 7
24 24 C 1.38243 * 119.99919 * 179.79310 * 23 22 9
25 25 C 1.38231 * 119.99940 * 0.43840 * 24 23 22
26 26 C 1.38243 * 120.00261 * 359.82080 * 25 24 23
27 27 C 1.38234 * 119.99791 * 238.35186 * 22 9 7
28 28 H 0.97001 * 120.00229 * 359.97438 * 1 2 3
29 29 H 1.08991 * 109.47379 * 185.00079 * 11 9 7
30 30 H 1.09002 * 109.46862 * 305.00353 * 11 9 7
31 31 H 1.08994 * 109.46988 * 300.00428 * 15 14 12
32 32 H 1.09002 * 109.46843 * 60.00224 * 15 14 12
33 33 H 0.96707 * 113.99959 * 300.69807 * 17 16 15
34 34 H 1.08993 * 110.51505 * 237.29037 * 18 16 15
35 35 H 1.08997 * 110.51194 * 0.02562 * 18 16 15
36 36 H 1.08997 * 110.37532 * 142.80982 * 19 18 16
37 37 H 1.09002 * 110.37489 * 265.03932 * 19 18 16
38 38 H 1.09001 * 110.36829 * 281.67908 * 21 20 19
39 39 H 1.09000 * 110.36967 * 159.34023 * 21 20 19
40 40 H 1.07996 * 120.00385 * 0.02562 * 23 22 9
41 41 H 1.07996 * 120.00022 * 180.28249 * 24 23 22
42 42 H 1.08004 * 120.00155 * 179.83340 * 25 24 23
43 43 H 1.07995 * 120.00246 * 179.97438 * 26 25 24
44 44 H 1.08000 * 120.00480 * 359.97362 * 27 22 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.5910 1.9919 1.3959
5 1 3.4964 1.4692 -0.7922
6 1 1.4027 2.6780 -0.6035
7 6 2.0045 -1.1941 -0.0005
8 1 1.4702 -2.1261 -0.1117
9 6 3.5035 -1.1988 0.1542
10 1 3.9199 -0.3067 -0.3137
11 6 4.0819 -2.4450 -0.5192
12 6 3.8345 -2.3743 -2.0041
13 8 3.2555 -1.4242 -2.4755
14 8 4.2583 -3.3660 -2.8031
15 6 3.9859 -3.2308 -4.2229
16 6 4.5387 -4.4483 -4.9665
17 8 3.8856 -5.6409 -4.5269
18 6 4.3734 -4.2716 -6.4925
19 6 5.8207 -4.2957 -7.0321
20 8 6.5742 -5.0200 -6.0353
21 6 6.0662 -4.5582 -4.7646
22 6 3.8574 -1.2094 1.6190
23 6 3.4018 -2.2297 2.4327
24 6 3.7299 -2.2417 3.7755
25 6 4.5061 -1.2286 4.3064
26 6 4.9573 -0.2053 3.4938
27 6 4.6327 -0.1956 2.1501
28 1 -0.4850 0.8400 0.0004
29 1 5.1543 -2.4948 -0.3315
30 1 3.6001 -3.3343 -0.1126
31 1 2.9095 -3.1663 -4.3818
32 1 4.4636 -2.3265 -4.5999
33 1 3.9823 -5.8165 -3.5809
34 1 3.7956 -5.0951 -6.9120
35 1 3.8982 -3.3167 -6.7172
36 1 5.8602 -4.8154 -7.9894
37 1 6.2038 -3.2805 -7.1362
38 1 6.4877 -3.5834 -4.5191
39 1 6.2943 -5.2797 -3.9800
40 1 2.7926 -3.0195 2.0187
41 1 3.3778 -3.0413 4.4103
42 1 4.7603 -1.2365 5.3561
43 1 5.5634 0.5865 3.9086
44 1 4.9852 0.6038 1.5152
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000842378422.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:36:11
Heat of formation + Delta-G solvation = -179.568695 kcal
Electronic energy + Delta-G solvation = -27113.134399 eV
Core-core repulsion = 23187.564761 eV
Total energy + Delta-G solvation = -3925.569638 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.150 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.67840 -40.71220 -39.98182 -37.83127 -36.86796 -35.91725 -33.81352 -32.88250
-31.62106 -30.88546 -30.19686 -28.29019 -26.94275 -24.58417 -23.94269 -23.31519
-22.18146 -21.61886 -20.86028 -19.11612 -18.66513 -18.45171 -17.70817 -17.48035
-17.23885 -17.11535 -16.57853 -16.26617 -16.01578 -15.68450 -15.45503 -15.02378
-14.78170 -14.45126 -14.26751 -14.10431 -13.93874 -13.79744 -13.57475 -13.48090
-13.27891 -13.01701 -12.78945 -12.76555 -12.49761 -12.19957 -12.00064 -11.91642
-11.86037 -11.69521 -11.56142 -11.35673 -11.21593 -11.05264 -10.70193 -10.65580
-9.63017 -9.34200 -8.27151 -6.24851 0.66732 0.70942 1.28991 1.32399
1.38766 1.40309 1.64904 2.35463 2.85452 3.03131 3.04326 3.18619
3.35736 3.55348 3.67268 3.97993 4.01922 4.07890 4.17467 4.24379
4.27135 4.32273 4.37581 4.42300 4.47261 4.55365 4.59061 4.65349
4.76303 4.76819 4.83992 4.87973 4.93710 4.99127 5.16408 5.33642
5.37176 5.44061 5.62059 5.67853 5.75877 5.80144 5.99187 6.28601
6.33520 6.63353 6.74742 6.95630 7.38465 8.89616
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.015135 B = 0.003474 C = 0.003117
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1849.587702 B = 8058.054319 C = 8982.175921
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.949 5.949
2 C 0.026 3.974
3 Si 0.917 3.083
4 H -0.259 1.259
5 H -0.252 1.252
6 H -0.298 1.298
7 C -0.472 4.472
8 H 0.038 0.962
9 C 0.046 3.954
10 H 0.040 0.960
11 C -0.085 4.085
12 C 0.463 3.537
13 O -0.517 6.517
14 O -0.358 6.358
15 C 0.043 3.957
16 C 0.111 3.889
17 O -0.559 6.559
18 C -0.145 4.145
19 C 0.043 3.957
20 O -0.390 6.390
21 C 0.028 3.972
22 C -0.064 4.064
23 C -0.117 4.117
24 C -0.125 4.125
25 C -0.139 4.139
26 C -0.125 4.125
27 C -0.155 4.155
28 H 0.260 0.740
29 H 0.121 0.879
30 H 0.110 0.890
31 H 0.064 0.936
32 H 0.084 0.916
33 H 0.395 0.605
34 H 0.094 0.906
35 H 0.102 0.898
36 H 0.114 0.886
37 H 0.078 0.922
38 H 0.076 0.924
39 H 0.108 0.892
40 H 0.114 0.886
41 H 0.140 0.860
42 H 0.146 0.854
43 H 0.140 0.860
44 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.004 -7.737 -4.220 17.400
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.590 5.590
2 C -0.171 4.171
3 Si 0.743 3.257
4 H -0.184 1.184
5 H -0.177 1.177
6 H -0.225 1.225
7 C -0.510 4.510
8 H 0.056 0.944
9 C 0.028 3.972
10 H 0.058 0.942
11 C -0.122 4.122
12 C 0.307 3.693
13 O -0.404 6.404
14 O -0.276 6.276
15 C -0.031 4.031
16 C 0.069 3.931
17 O -0.367 6.367
18 C -0.182 4.182
19 C -0.033 4.033
20 O -0.309 6.309
21 C -0.049 4.049
22 C -0.064 4.064
23 C -0.135 4.135
24 C -0.142 4.142
25 C -0.157 4.157
26 C -0.142 4.142
27 C -0.173 4.173
28 H 0.069 0.931
29 H 0.139 0.861
30 H 0.128 0.872
31 H 0.082 0.918
32 H 0.102 0.898
33 H 0.245 0.755
34 H 0.113 0.887
35 H 0.121 0.879
36 H 0.132 0.868
37 H 0.096 0.904
38 H 0.094 0.906
39 H 0.126 0.874
40 H 0.132 0.868
41 H 0.158 0.842
42 H 0.164 0.836
43 H 0.158 0.842
44 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges 14.686 -7.534 -5.067 17.266
hybrid contribution -0.753 1.380 0.266 1.594
sum 13.932 -6.154 -4.801 15.970
Atomic orbital electron populations
1.70030 1.07958 1.27388 1.53597 1.25591 0.95051 1.02101 0.94400
0.86165 0.79680 0.80505 0.79347 1.18415 1.17674 1.22479 1.20841
0.90375 0.92814 1.46968 0.94393 1.18179 0.94913 0.94908 0.89249
0.94181 1.21405 1.03966 1.01628 0.85212 1.24157 0.74733 0.79486
0.90968 1.90707 1.38033 1.34803 1.76850 1.86409 1.74134 1.47338
1.19722 1.23815 1.01619 0.99715 0.77961 1.22637 0.92451 0.83155
0.94836 1.86506 1.76768 1.41959 1.31489 1.23008 0.99655 1.05025
0.90527 1.23651 0.88277 0.98108 0.93304 1.89129 1.60987 1.64880
1.15942 1.24125 0.91577 1.01558 0.87685 1.20384 0.94333 0.94617
0.97088 1.21041 0.99237 0.98987 0.94267 1.21417 0.98428 0.99636
0.94761 1.21356 0.99106 0.94628 1.00610 1.21340 1.00489 0.99368
0.93053 1.21203 1.00520 0.98877 0.96689 0.93077 0.86122 0.87232
0.91803 0.89773 0.75451 0.88718 0.87913 0.86777 0.90384 0.90610
0.87394 0.86825 0.84207 0.83597 0.84241 0.87340
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16
2 C 0.03 1.50 5.47 84.65 0.46 1.97 16
3 Si 0.92 46.08 26.57 68.60 1.82 47.90 16
4 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16
5 H -0.25 -12.11 6.29 99.48 0.63 -11.48 16
6 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16
7 C -0.47 -25.82 6.98 25.60 0.18 -25.64 16
8 H 0.04 2.29 8.06 -2.91 -0.02 2.26 16
9 C 0.05 2.02 1.21 -12.28 -0.01 2.01 16
10 H 0.04 1.87 4.88 -2.39 -0.01 1.85 16
11 C -0.08 -2.94 5.04 29.85 0.15 -2.79 16
12 C 0.46 17.35 7.71 71.24 0.55 17.90 16
13 O -0.52 -24.21 14.73 21.94 0.32 -23.89 16
14 O -0.36 -10.55 9.55 -48.48 -0.46 -11.01 16
15 C 0.04 1.15 4.32 71.98 0.31 1.46 16
16 C 0.11 2.42 1.26 -9.78 -0.01 2.40 16
17 O -0.56 -13.23 13.00 -144.79 -1.88 -15.11 16
18 C -0.14 -2.59 6.54 31.61 0.21 -2.38 16
19 C 0.04 0.68 7.63 72.49 0.55 1.24 16
20 O -0.39 -8.61 11.65 -148.98 -1.74 -10.35 16
21 C 0.03 0.56 6.65 72.48 0.48 1.04 16
22 C -0.06 -2.50 4.52 -19.87 -0.09 -2.59 16
23 C -0.12 -4.23 8.86 22.27 0.20 -4.03 16
24 C -0.12 -3.69 10.05 22.27 0.22 -3.47 16
25 C -0.14 -3.77 10.05 22.27 0.22 -3.55 16
26 C -0.12 -3.68 10.05 22.27 0.22 -3.46 16
27 C -0.15 -5.54 9.06 22.27 0.20 -5.34 16
28 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16
29 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16
30 H 0.11 3.54 7.68 -2.39 -0.02 3.52 16
31 H 0.06 1.94 8.13 -2.39 -0.02 1.92 16
32 H 0.08 2.12 8.13 -2.39 -0.02 2.10 16
33 H 0.39 7.46 8.74 -74.05 -0.65 6.81 16
34 H 0.09 1.74 8.00 -2.39 -0.02 1.72 16
35 H 0.10 1.58 7.73 -2.39 -0.02 1.56 16
36 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16
37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16
38 H 0.08 1.44 7.87 -2.39 -0.02 1.43 16
39 H 0.11 2.01 8.09 -2.39 -0.02 1.99 16
40 H 0.11 4.14 7.71 -2.91 -0.02 4.11 16
41 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16
42 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16
43 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16
44 H 0.11 3.79 7.89 -2.91 -0.02 3.77 16
Total: -1.00 -74.66 365.18 2.49 -72.17
By element:
Atomic # 1 Polarization: 25.21 SS G_CDS: 0.28 Total: 25.49 kcal
Atomic # 6 Polarization: -29.07 SS G_CDS: 3.85 Total: -25.23 kcal
Atomic # 7 Polarization: -60.28 SS G_CDS: 0.30 Total: -59.98 kcal
Atomic # 8 Polarization: -56.60 SS G_CDS: -3.76 Total: -60.36 kcal
Atomic # 14 Polarization: 46.08 SS G_CDS: 1.82 Total: 47.90 kcal
Total: -74.66 2.49 -72.17 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000842378422.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -107.400 kcal
(2) G-P(sol) polarization free energy of solvation -74.660 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.060 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.169 kcal
(6) G-S(sol) free energy of system = (1) + (5) -179.569 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds