Wall clock time and date at job start Tue Mar 31 2020 13:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86802 * 120.00343 * 2 1 4 4 H 1.48506 * 109.46818 * 270.00094 * 3 2 1 5 5 H 1.48498 * 109.47067 * 29.99918 * 3 2 1 6 6 H 1.48496 * 109.47458 * 150.00295 * 3 2 1 7 7 C 1.37885 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99566 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99844 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46545 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99649 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47405 * 179.97438 * 11 10 9 13 13 O 1.42903 * 109.46726 * 64.99720 * 12 11 10 14 14 C 1.42899 * 113.99629 * 180.02562 * 13 12 11 15 15 C 1.53009 * 109.47113 * 180.02562 * 14 13 12 16 16 O 1.45193 * 109.46913 * 64.99838 * 15 14 13 17 17 C 1.34229 * 116.99914 * 180.02562 * 16 15 14 18 18 O 1.20828 * 119.99874 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00141 * 180.02562 * 17 16 15 20 20 H 1.08996 * 112.83112 * 311.11279 * 19 17 16 21 21 C 1.53524 * 113.58987 * 179.97438 * 19 17 16 22 22 C 1.51608 * 87.24623 * 245.40919 * 21 19 17 23 23 C 1.38379 * 147.52385 * 179.97438 * 22 21 19 24 24 C 1.38091 * 120.32342 * 179.97438 * 23 22 21 25 25 C 1.38246 * 119.96062 * 0.03892 * 24 23 22 26 26 C 1.38101 * 119.94851 * 359.97438 * 25 24 23 27 27 C 1.38369 * 120.33002 * 0.02562 * 26 25 24 28 28 H 0.97004 * 120.00403 * 359.97438 * 1 2 3 29 29 H 1.08990 * 109.47088 * 60.00044 * 9 7 2 30 30 H 1.08992 * 109.46694 * 299.99407 * 9 7 2 31 31 H 1.09002 * 109.47445 * 59.99875 * 11 10 9 32 32 H 1.09002 * 109.47167 * 299.99793 * 11 10 9 33 33 H 1.09002 * 109.47398 * 184.99964 * 12 11 10 34 34 H 1.09001 * 109.47194 * 305.00145 * 12 11 10 35 35 H 1.09007 * 109.47484 * 299.99646 * 14 13 12 36 36 H 1.09004 * 109.47459 * 59.99983 * 14 13 12 37 37 H 1.09000 * 109.47262 * 184.99920 * 15 14 13 38 38 H 1.09002 * 109.46484 * 304.99927 * 15 14 13 39 39 H 1.09004 * 113.58371 * 0.02562 * 21 19 17 40 40 H 1.09002 * 113.58686 * 130.73832 * 21 19 17 41 41 H 1.07997 * 119.83474 * 0.03554 * 23 22 21 42 42 H 1.08010 * 120.01956 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.02579 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.82894 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0017 11 6 1.5649 -4.8754 0.0024 12 6 2.6478 -5.9563 0.0030 13 8 3.3872 -5.8890 1.2241 14 6 4.4295 -6.8611 1.3267 15 6 5.1496 -6.6973 2.6667 16 8 4.2319 -7.0023 3.7498 17 6 4.7109 -6.9051 4.9999 18 8 5.8591 -6.5766 5.1831 19 6 3.8169 -7.2069 6.1749 20 1 2.8553 -6.6971 6.1166 21 6 4.5143 -7.0503 7.5337 22 6 4.3341 -8.5445 7.7161 23 6 4.5292 -9.6545 8.5190 24 6 4.0991 -10.8994 8.1042 25 6 3.4708 -11.0405 6.8809 26 6 3.2738 -9.9361 6.0756 27 6 3.7028 -8.6863 6.4863 28 1 -0.4851 0.8400 0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 0.9451 -4.9831 -0.8877 32 1 0.9444 -4.9818 0.8922 33 1 2.1818 -6.9376 -0.0860 34 1 3.3214 -5.7962 -0.8388 35 1 4.0008 -7.8615 1.2650 36 1 5.1400 -6.7195 0.5123 37 1 5.9996 -7.3784 2.7081 38 1 5.5015 -5.6705 2.7668 39 1 5.5571 -6.7426 7.4558 40 1 3.9490 -6.4511 8.2475 41 1 5.0195 -9.5464 9.4752 42 1 4.2544 -11.7625 8.7347 43 1 3.1344 -12.0137 6.5553 44 1 2.7824 -10.0485 5.1205 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861319133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:32 Heat of formation + Delta-G solvation = -117.296632 kcal Electronic energy + Delta-G solvation = -25428.320839 eV Core-core repulsion = 21505.451520 eV Total energy + Delta-G solvation = -3922.869319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.40935 -39.88278 -38.07771 -36.82900 -36.17453 -35.51667 -32.73520 -31.30391 -31.01407 -29.00879 -28.05602 -26.74859 -25.96523 -23.21134 -22.40547 -22.32300 -21.90393 -21.45379 -20.12081 -18.15488 -17.34006 -17.11276 -16.66445 -16.37792 -16.06889 -15.97169 -15.61184 -14.95583 -14.88252 -14.68522 -14.37106 -14.11728 -13.80549 -13.51120 -13.38176 -13.02766 -12.85331 -12.77619 -12.46907 -12.26155 -12.06984 -11.71973 -11.61659 -11.39102 -11.16095 -10.98040 -10.82495 -10.78662 -10.75704 -10.60086 -10.47915 -9.98327 -9.49642 -9.21435 -9.07180 -8.97197 -8.80600 -8.14505 -6.08252 -4.09440 0.86613 1.02233 1.97735 2.47197 3.32376 3.37150 3.38999 3.43376 3.70406 3.72712 3.97816 4.00070 4.37095 4.52662 4.68729 4.73307 4.78269 4.87593 4.89300 5.01321 5.17223 5.19065 5.26484 5.28166 5.31347 5.35121 5.42407 5.48931 5.55896 5.59325 5.63644 5.71710 6.01230 6.01948 6.02787 6.12490 6.23334 6.27682 6.31649 6.58650 7.12105 7.32933 7.46147 7.57980 7.82635 8.18197 8.60864 9.04002 9.55090 11.03377 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.016073 B = 0.002155 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.582615 B =12988.557563 C =13667.692480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.389 6.389 11 C 0.063 3.937 12 C 0.068 3.932 13 O -0.368 6.368 14 C 0.062 3.938 15 C 0.070 3.930 16 O -0.341 6.341 17 C 0.481 3.519 18 O -0.505 6.505 19 C -0.042 4.042 20 H 0.136 0.864 21 C -0.058 4.058 22 C -0.117 4.117 23 C -0.097 4.097 24 C -0.110 4.110 25 C -0.121 4.121 26 C -0.081 4.081 27 C -0.126 4.126 28 H 0.264 0.736 29 H 0.005 0.995 30 H 0.006 0.994 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.121 0.879 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.619 -24.081 13.643 28.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.551 4.551 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.309 6.309 11 C -0.014 4.014 12 C -0.008 4.008 13 O -0.287 6.287 14 C -0.015 4.015 15 C -0.004 4.004 16 O -0.257 6.257 17 C 0.324 3.676 18 O -0.392 6.392 19 C -0.061 4.061 20 H 0.154 0.846 21 C -0.094 4.094 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.128 4.128 25 C -0.139 4.139 26 C -0.099 4.099 27 C -0.126 4.126 28 H 0.073 0.927 29 H 0.022 0.978 30 H 0.024 0.976 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.129 0.871 40 H 0.123 0.877 41 H 0.139 0.861 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.977 -23.696 13.796 28.557 hybrid contribution 0.088 0.619 -0.392 0.738 sum 8.065 -23.077 13.404 27.880 Atomic orbital electron populations 1.69960 1.06087 1.27109 1.50704 1.24955 0.94995 0.99435 0.95213 0.86333 0.79709 0.82248 0.78187 1.20495 1.21072 1.19612 1.21062 0.94080 0.89355 1.50595 0.91556 1.20208 0.88797 0.83658 0.95354 1.87910 1.35189 1.12657 1.95166 1.22254 0.93696 0.85627 0.99868 1.22595 0.94066 0.97368 0.86777 1.88102 1.47042 1.54882 1.38649 1.22498 0.91312 0.93095 0.94623 1.23180 0.90951 1.02873 0.83361 1.86546 1.44504 1.79637 1.14965 1.22969 0.86994 0.73473 0.84191 1.90659 1.19021 1.43458 1.86100 1.21212 1.00201 0.93360 0.91323 0.84591 1.21903 1.03324 0.91141 0.93079 1.22210 0.97969 0.95962 0.95573 1.20304 1.00596 0.90968 0.99646 1.21066 0.98290 0.96882 0.96576 1.21024 0.99944 0.98276 0.94648 1.20409 0.98945 0.90473 1.00054 1.21614 1.00847 0.93155 0.96967 0.92689 0.97766 0.97625 0.92953 0.93592 0.92695 0.92683 0.92524 0.90933 0.89829 0.89696 0.87112 0.87652 0.86077 0.85423 0.85333 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.28 55.43 0.74 -26.56 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.25 29.54 -169.99 -5.02 17.23 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -15.50 9.43 -34.44 -0.32 -15.82 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.19 5.48 5.69 36.01 0.20 5.69 16 10 O -0.39 -9.81 10.29 -40.09 -0.41 -10.22 16 11 C 0.06 1.21 6.32 37.16 0.23 1.44 16 12 C 0.07 1.05 6.32 37.16 0.23 1.28 16 13 O -0.37 -6.19 10.28 -48.79 -0.50 -6.69 16 14 C 0.06 0.74 6.33 37.16 0.24 0.98 16 15 C 0.07 0.87 5.84 37.16 0.22 1.09 16 16 O -0.34 -4.67 10.19 -42.02 -0.43 -5.09 16 17 C 0.48 6.32 7.49 36.00 0.27 6.59 16 18 O -0.50 -7.61 15.45 -18.75 -0.29 -7.90 16 19 C -0.04 -0.43 4.44 -92.22 -0.41 -0.84 16 20 H 0.14 1.19 8.14 -51.93 -0.42 0.77 16 21 C -0.06 -0.51 7.77 -27.18 -0.21 -0.72 16 22 C -0.12 -1.12 7.49 -103.88 -0.78 -1.90 16 23 C -0.10 -0.80 10.03 -39.58 -0.40 -1.19 16 24 C -0.11 -0.80 10.04 -39.63 -0.40 -1.20 16 25 C -0.12 -0.92 10.04 -39.63 -0.40 -1.32 16 26 C -0.08 -0.74 10.03 -39.58 -0.40 -1.14 16 27 C -0.13 -1.29 6.98 -103.88 -0.72 -2.01 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.85 8.13 -51.93 -0.42 0.43 16 38 H 0.08 1.17 8.13 -51.93 -0.42 0.74 16 39 H 0.11 1.06 7.05 -51.93 -0.37 0.70 16 40 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.13 0.61 8.06 -52.48 -0.42 0.18 16 43 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 383.15 15.07 5.77 5.77 Total: -1.00 -35.92 383.15 -9.56 -45.48 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -6.67 Total: -4.44 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -2.74 Total: -7.56 kcal Atomic # 7 Polarization: -27.30 SS G_CDS: 0.74 Total: -26.56 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -1.63 Total: -29.91 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.92 -9.56 -45.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861319133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.821 kcal (2) G-P(sol) polarization free energy of solvation -35.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds