Wall clock time and date at job start Tue Mar 31 2020 13:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86802 * 120.00343 * 2 1 4 4 H 1.48506 * 109.46818 * 270.00094 * 3 2 1 5 5 H 1.48498 * 109.47067 * 29.99918 * 3 2 1 6 6 H 1.48496 * 109.47458 * 150.00295 * 3 2 1 7 7 C 1.37885 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99566 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99844 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46545 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99649 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47405 * 179.97438 * 11 10 9 13 13 O 1.42903 * 109.46726 * 64.99720 * 12 11 10 14 14 C 1.42899 * 113.99629 * 180.02562 * 13 12 11 15 15 C 1.53009 * 109.47113 * 180.02562 * 14 13 12 16 16 O 1.45193 * 109.46913 * 64.99838 * 15 14 13 17 17 C 1.34229 * 116.99914 * 180.02562 * 16 15 14 18 18 O 1.20828 * 119.99874 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00141 * 180.02562 * 17 16 15 20 20 H 1.08996 * 112.83112 * 311.11279 * 19 17 16 21 21 C 1.53524 * 113.58987 * 179.97438 * 19 17 16 22 22 C 1.51608 * 87.24623 * 245.40919 * 21 19 17 23 23 C 1.38379 * 147.52385 * 179.97438 * 22 21 19 24 24 C 1.38091 * 120.32342 * 179.97438 * 23 22 21 25 25 C 1.38246 * 119.96062 * 0.03892 * 24 23 22 26 26 C 1.38101 * 119.94851 * 359.97438 * 25 24 23 27 27 C 1.38369 * 120.33002 * 0.02562 * 26 25 24 28 28 H 0.97004 * 120.00403 * 359.97438 * 1 2 3 29 29 H 1.08990 * 109.47088 * 60.00044 * 9 7 2 30 30 H 1.08992 * 109.46694 * 299.99407 * 9 7 2 31 31 H 1.09002 * 109.47445 * 59.99875 * 11 10 9 32 32 H 1.09002 * 109.47167 * 299.99793 * 11 10 9 33 33 H 1.09002 * 109.47398 * 184.99964 * 12 11 10 34 34 H 1.09001 * 109.47194 * 305.00145 * 12 11 10 35 35 H 1.09007 * 109.47484 * 299.99646 * 14 13 12 36 36 H 1.09004 * 109.47459 * 59.99983 * 14 13 12 37 37 H 1.09000 * 109.47262 * 184.99920 * 15 14 13 38 38 H 1.09002 * 109.46484 * 304.99927 * 15 14 13 39 39 H 1.09004 * 113.58371 * 0.02562 * 21 19 17 40 40 H 1.09002 * 113.58686 * 130.73832 * 21 19 17 41 41 H 1.07997 * 119.83474 * 0.03554 * 23 22 21 42 42 H 1.08010 * 120.01956 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.02579 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.82894 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0017 11 6 1.5649 -4.8754 0.0024 12 6 2.6478 -5.9563 0.0030 13 8 3.3872 -5.8890 1.2241 14 6 4.4295 -6.8611 1.3267 15 6 5.1496 -6.6973 2.6667 16 8 4.2319 -7.0023 3.7498 17 6 4.7109 -6.9051 4.9999 18 8 5.8591 -6.5766 5.1831 19 6 3.8169 -7.2069 6.1749 20 1 2.8553 -6.6971 6.1166 21 6 4.5143 -7.0503 7.5337 22 6 4.3341 -8.5445 7.7161 23 6 4.5292 -9.6545 8.5190 24 6 4.0991 -10.8994 8.1042 25 6 3.4708 -11.0405 6.8809 26 6 3.2738 -9.9361 6.0756 27 6 3.7028 -8.6863 6.4863 28 1 -0.4851 0.8400 0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 0.9451 -4.9831 -0.8877 32 1 0.9444 -4.9818 0.8922 33 1 2.1818 -6.9376 -0.0860 34 1 3.3214 -5.7962 -0.8388 35 1 4.0008 -7.8615 1.2650 36 1 5.1400 -6.7195 0.5123 37 1 5.9996 -7.3784 2.7081 38 1 5.5015 -5.6705 2.7668 39 1 5.5571 -6.7426 7.4558 40 1 3.9490 -6.4511 8.2475 41 1 5.0195 -9.5464 9.4752 42 1 4.2544 -11.7625 8.7347 43 1 3.1344 -12.0137 6.5553 44 1 2.7824 -10.0485 5.1205 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861319133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:31 Heat of formation + Delta-G solvation = -138.437536 kcal Electronic energy + Delta-G solvation = -25429.237577 eV Core-core repulsion = 21505.451520 eV Total energy + Delta-G solvation = -3923.786057 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.25003 -40.73524 -39.35660 -38.25559 -37.53694 -36.24762 -34.95326 -32.35898 -31.77863 -30.46259 -28.91674 -28.64811 -26.73530 -24.55895 -24.06103 -23.38874 -23.14852 -22.21583 -20.89868 -19.11422 -18.67993 -18.31555 -18.01208 -17.65688 -17.56013 -16.96374 -16.67029 -16.32386 -16.09082 -15.93934 -15.82273 -15.46362 -14.94032 -14.51249 -14.43247 -13.96974 -13.84666 -13.73400 -13.56991 -13.38219 -13.16268 -13.10949 -12.95194 -12.76912 -12.69623 -12.43794 -12.25315 -12.05828 -11.92593 -11.82470 -11.66944 -11.37876 -11.30774 -10.89759 -10.58723 -10.25227 -9.85166 -9.61720 -8.33608 -6.45947 0.21532 0.39499 0.97792 1.38414 1.41646 1.53830 1.56445 2.33724 2.63439 2.76124 2.99742 3.00598 3.18611 3.25341 3.33838 3.63515 3.83513 4.04463 4.11373 4.15802 4.17789 4.22096 4.22411 4.31740 4.47070 4.56092 4.58008 4.60798 4.66590 4.67399 4.75033 4.76429 4.87726 4.88589 4.89999 5.08715 5.16309 5.28406 5.42899 5.52992 5.53110 5.65649 5.94442 6.00081 6.23872 6.52502 6.56175 6.80764 7.25760 8.78757 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.016073 B = 0.002155 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.582615 B =12988.557563 C =13667.692480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.267 1.267 7 C -0.550 4.550 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.408 6.408 11 C 0.049 3.951 12 C 0.074 3.926 13 O -0.408 6.408 14 C 0.061 3.939 15 C 0.065 3.935 16 O -0.351 6.351 17 C 0.479 3.521 18 O -0.531 6.531 19 C -0.047 4.047 20 H 0.146 0.854 21 C -0.053 4.053 22 C -0.132 4.132 23 C -0.106 4.106 24 C -0.109 4.109 25 C -0.123 4.123 26 C -0.096 4.096 27 C -0.150 4.150 28 H 0.272 0.728 29 H -0.008 1.008 30 H -0.017 1.017 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.127 0.873 41 H 0.140 0.860 42 H 0.157 0.843 43 H 0.154 0.846 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.168 -25.264 13.980 30.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.192 1.192 7 C -0.588 4.588 8 H 0.077 0.923 9 C 0.133 3.867 10 O -0.328 6.328 11 C -0.028 4.028 12 C -0.001 4.001 13 O -0.328 6.328 14 C -0.015 4.015 15 C -0.009 4.009 16 O -0.267 6.267 17 C 0.323 3.677 18 O -0.421 6.421 19 C -0.065 4.065 20 H 0.164 0.836 21 C -0.089 4.089 22 C -0.132 4.132 23 C -0.124 4.124 24 C -0.127 4.127 25 C -0.141 4.141 26 C -0.114 4.114 27 C -0.150 4.150 28 H 0.080 0.920 29 H 0.009 0.991 30 H 0.001 0.999 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.116 0.884 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.124 0.876 38 H 0.082 0.918 39 H 0.117 0.883 40 H 0.145 0.855 41 H 0.158 0.842 42 H 0.174 0.826 43 H 0.171 0.829 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.517 -24.913 14.125 29.879 hybrid contribution -0.112 0.841 -0.481 0.975 sum 8.405 -24.073 13.644 28.919 Atomic orbital electron populations 1.70059 1.07684 1.28698 1.50379 1.25980 0.96040 1.03405 0.93884 0.85174 0.78265 0.76951 0.78959 1.18990 1.19715 1.19184 1.21382 0.94011 0.90970 1.52395 0.92295 1.19838 0.88633 0.84713 0.93532 1.87858 1.35394 1.14340 1.95222 1.22682 0.95658 0.83952 1.00499 1.22603 0.93366 0.97531 0.86643 1.88039 1.48519 1.56915 1.39336 1.22733 0.90815 0.93219 0.94759 1.23321 0.91717 1.02262 0.83573 1.86553 1.45113 1.79562 1.15503 1.23572 0.87067 0.72520 0.84564 1.90632 1.20246 1.44799 1.86399 1.21349 1.00220 0.94243 0.90713 0.83631 1.21898 1.02790 0.91538 0.92697 1.22382 0.98467 0.96476 0.95862 1.20646 1.00530 0.90924 1.00315 1.21470 0.97065 0.97459 0.96675 1.21380 0.99343 0.98828 0.94540 1.20662 0.99305 0.90651 1.00770 1.21711 1.02349 0.93238 0.97693 0.91962 0.99075 0.99923 0.91092 0.94156 0.88441 0.91859 0.90030 0.88746 0.87604 0.91832 0.88287 0.85495 0.84239 0.82573 0.82876 0.85368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.83 13.28 21.45 0.28 -56.55 16 2 C 0.01 0.32 5.46 84.66 0.46 0.78 16 3 Si 0.98 45.47 29.54 68.60 2.03 47.50 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 7 C -0.55 -34.00 9.43 25.60 0.24 -33.75 16 8 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 9 C 0.21 12.15 5.69 71.24 0.41 12.56 16 10 O -0.41 -21.06 10.29 -144.34 -1.49 -22.55 16 11 C 0.05 1.87 6.32 71.98 0.45 2.32 16 12 C 0.07 2.16 6.32 71.98 0.45 2.62 16 13 O -0.41 -13.49 10.28 -136.01 -1.40 -14.89 16 14 C 0.06 1.37 6.33 71.99 0.46 1.83 16 15 C 0.06 1.60 5.84 71.99 0.42 2.02 16 16 O -0.35 -9.78 10.19 -48.76 -0.50 -10.28 16 17 C 0.48 12.99 7.49 71.23 0.53 13.53 16 18 O -0.53 -16.65 15.45 21.96 0.34 -16.31 16 19 C -0.05 -0.98 4.44 -11.83 -0.05 -1.03 16 20 H 0.15 2.64 8.14 -2.39 -0.02 2.62 16 21 C -0.05 -0.94 7.77 30.30 0.24 -0.70 16 22 C -0.13 -2.46 7.49 -19.38 -0.15 -2.60 16 23 C -0.11 -1.58 10.03 22.27 0.22 -1.36 16 24 C -0.11 -1.34 10.04 22.24 0.22 -1.12 16 25 C -0.12 -1.65 10.04 22.24 0.22 -1.42 16 26 C -0.10 -1.69 10.03 22.27 0.22 -1.46 16 27 C -0.15 -3.05 6.98 -19.38 -0.14 -3.19 16 28 H 0.27 15.32 8.31 -92.71 -0.77 14.54 16 29 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 30 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 31 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.11 2.10 8.13 -2.39 -0.02 2.08 16 38 H 0.06 1.82 8.13 -2.39 -0.02 1.80 16 39 H 0.10 1.98 7.05 -2.39 -0.02 1.97 16 40 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 42 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 43 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 44 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -79.21 383.15 4.48 -74.73 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.98 Total: 9.33 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 4.22 Total: -10.99 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.28 Total: -56.55 kcal Atomic # 8 Polarization: -60.99 SS G_CDS: -3.04 Total: -64.03 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -79.21 4.48 -74.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861319133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.704 kcal (2) G-P(sol) polarization free energy of solvation -79.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds