Wall clock time and date at job start Tue Mar 31 2020 13:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35728 * 116.99943 * 2 1 4 4 N 1.32222 * 119.69891 * 359.97438 * 3 2 1 5 5 C 1.31960 * 121.67161 * 180.02562 * 4 3 2 6 6 C 1.38060 * 120.88050 * 359.71554 * 5 4 3 7 7 C 1.38791 * 119.30532 * 0.55748 * 6 5 4 8 8 C 1.50705 * 120.76877 * 179.72659 * 7 6 5 9 9 N 1.46899 * 109.47223 * 259.72782 * 8 7 6 10 10 C 1.46896 * 111.00359 * 75.56490 * 9 8 7 11 11 C 1.50704 * 109.47290 * 63.86271 * 10 9 8 12 12 H 1.08001 * 119.99689 * 4.87222 * 11 10 9 13 13 C 1.37877 * 120.00195 * 184.87741 * 11 10 9 14 14 N 1.31513 * 119.99995 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99719 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47360 * 59.99710 * 15 13 11 17 17 H 1.48508 * 109.47113 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47279 * 299.99457 * 15 13 11 19 19 C 1.46896 * 110.99869 * 199.52379 * 9 8 7 20 20 C 1.50704 * 109.47241 * 170.00131 * 19 9 8 21 21 C 1.34506 * 125.79566 * 89.71152 * 20 19 9 22 22 C 1.41383 * 106.84347 * 179.89120 * 21 20 19 23 23 C 1.34505 * 106.83975 * 0.36969 * 22 21 20 24 24 O 1.34302 * 125.78478 * 270.02231 * 20 19 9 25 25 C 1.38577 * 118.46704 * 359.45938 * 7 6 5 26 26 F 1.35096 * 120.46772 * 180.29466 * 25 7 6 27 27 H 1.08997 * 109.47119 * 299.99778 * 1 2 3 28 28 H 1.08999 * 109.47641 * 60.00180 * 1 2 3 29 29 H 1.09000 * 109.47039 * 180.02562 * 1 2 3 30 30 H 1.08005 * 119.55786 * 179.97438 * 5 4 3 31 31 H 1.08005 * 120.34610 * 180.28735 * 6 5 4 32 32 H 1.08992 * 109.47431 * 139.72321 * 8 7 6 33 33 H 1.09002 * 109.46643 * 19.72204 * 8 7 6 34 34 H 1.09004 * 109.47040 * 183.86213 * 10 9 8 35 35 H 1.09005 * 109.47415 * 303.86194 * 10 9 8 36 36 H 0.96999 * 119.99811 * 179.97438 * 14 13 11 37 37 H 1.09002 * 109.47007 * 289.99071 * 19 9 8 38 38 H 1.08994 * 109.47786 * 49.99628 * 19 9 8 39 39 H 1.08010 * 126.57742 * 0.02613 * 21 20 19 40 40 H 1.07999 * 126.57870 * 180.16271 * 22 21 20 41 41 H 1.08001 * 125.79521 * 179.74917 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 7 1.3192 2.3144 -0.0005 5 6 1.8774 3.5102 -0.0010 6 6 3.2508 3.6510 0.0048 7 6 4.0501 2.5163 -0.0005 8 6 5.5527 2.6317 -0.0005 9 7 6.0594 2.4290 -1.3644 10 6 5.8210 3.6158 -2.1965 11 6 6.6009 4.7812 -1.6446 12 1 7.2732 4.6353 -0.8120 13 6 6.4562 6.0338 -2.2024 14 7 5.6379 6.2114 -3.2165 15 14 7.4235 7.4781 -1.5187 16 1 8.8775 7.1994 -1.6348 17 1 7.0921 8.7044 -2.2879 18 1 7.0704 7.6786 -0.0903 19 6 7.4848 2.0744 -1.3491 20 6 7.9085 1.6368 -2.7276 21 6 8.3835 2.4398 -3.6965 22 6 8.6550 1.6171 -4.8139 23 6 8.3218 0.3619 -4.4637 24 8 7.8702 0.3798 -3.1989 25 6 3.4345 1.2748 0.0000 26 9 4.1735 0.1438 0.0010 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.2515 4.3904 -0.0019 31 1 3.6986 4.6338 0.0090 32 1 5.9753 1.8750 0.6603 33 1 5.8409 3.6226 0.3505 34 1 6.1433 3.4140 -3.2180 35 1 4.7576 3.8554 -2.1917 36 1 5.5358 7.0927 -3.6087 37 1 8.0718 2.9417 -1.0469 38 1 7.6493 1.2605 -0.6430 39 1 8.5315 3.5078 -3.6324 40 1 9.0504 1.9360 -5.7669 41 1 8.4032 -0.5121 -5.0929 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891464927.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:00 Heat of formation + Delta-G solvation = -17.050629 kcal Electronic energy + Delta-G solvation = -27230.795690 eV Core-core repulsion = 23221.105810 eV Total energy + Delta-G solvation = -4009.689880 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.41736 -41.92249 -40.27051 -38.07845 -36.84328 -32.94299 -32.50648 -32.13979 -30.24557 -29.70315 -27.68042 -27.01074 -25.94000 -24.24042 -23.08155 -22.22181 -21.09550 -20.50751 -19.55450 -17.88998 -17.46710 -16.92332 -16.84319 -16.27487 -16.24393 -15.64347 -15.12054 -14.88373 -14.66177 -14.43442 -14.24730 -14.10664 -13.73053 -13.21773 -12.90614 -12.83944 -12.45300 -12.26619 -12.21140 -12.11050 -11.97704 -11.63745 -11.16789 -11.14620 -11.01708 -10.96428 -10.75939 -10.43348 -10.16807 -9.81984 -9.56943 -9.26819 -9.18756 -8.52524 -8.12769 -7.89907 -7.36379 -6.12419 -4.22858 1.24811 1.39899 2.32318 3.08661 3.20212 3.24509 3.27167 3.28815 3.60334 3.87150 4.30599 4.37759 4.57285 4.87036 5.12308 5.17718 5.22310 5.28135 5.32740 5.35267 5.36228 5.60341 5.62170 5.69844 5.82658 5.87963 5.94854 6.12791 6.25390 6.33417 6.41585 6.58156 6.62947 6.66138 6.69624 7.07412 7.16962 7.33214 7.44177 7.74116 7.81150 7.89183 7.92289 8.04600 8.15428 8.86295 9.43949 10.92352 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010002 B = 0.005226 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.902057 B = 5356.622365 C = 7433.513403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.306 6.306 3 C 0.280 3.720 4 N -0.522 5.522 5 C 0.119 3.881 6 C -0.155 4.155 7 C -0.017 4.017 8 C 0.094 3.906 9 N -0.533 5.533 10 C 0.180 3.820 11 C -0.554 4.554 12 H 0.057 0.943 13 C 0.072 3.928 14 N -0.883 5.883 15 Si 0.884 3.116 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.138 3.862 20 C 0.013 3.987 21 C -0.192 4.192 22 C -0.214 4.214 23 C -0.062 4.062 24 O -0.177 6.177 25 C 0.049 3.951 26 F -0.121 7.121 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.164 0.836 31 H 0.153 0.847 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.264 0.736 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.152 0.848 40 H 0.140 0.860 41 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.415 -8.188 4.919 10.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.213 6.213 3 C 0.100 3.900 4 N -0.246 5.246 5 C -0.036 4.036 6 C -0.176 4.176 7 C -0.026 4.026 8 C -0.033 4.033 9 N -0.257 5.257 10 C 0.055 3.945 11 C -0.593 4.593 12 H 0.075 0.925 13 C -0.132 4.132 14 N -0.521 5.521 15 Si 0.712 3.288 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C 0.011 3.989 20 C -0.037 4.037 21 C -0.211 4.211 22 C -0.234 4.234 23 C -0.130 4.130 24 O -0.073 6.073 25 C 0.027 3.973 26 F -0.100 7.100 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.181 0.819 31 H 0.171 0.829 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.170 0.830 40 H 0.157 0.843 41 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -4.625 -9.081 4.747 11.242 hybrid contribution 1.682 1.827 0.138 2.487 sum -2.943 -7.255 4.885 9.228 Atomic orbital electron populations 1.22816 0.77442 1.02638 1.02370 1.86276 1.22713 1.24011 1.88324 1.19782 0.87894 0.85754 0.96572 1.67319 1.39764 0.98446 1.19078 1.22378 0.93057 0.93321 0.94837 1.22059 0.93832 1.00007 1.01688 1.20280 0.97863 0.90161 0.94256 1.20865 0.88086 1.02260 0.92114 1.62463 1.13745 1.40029 1.09502 1.19923 0.97552 0.83871 0.93127 1.21589 1.26275 0.94123 1.17300 0.92491 1.24892 0.95002 0.98567 0.94722 1.69937 1.35950 1.23295 1.22895 0.86793 0.80703 0.82217 0.79135 1.20222 1.21239 1.20215 1.20362 0.90782 0.99339 0.88419 1.22301 1.02756 0.80939 0.97709 1.21724 1.05548 1.01112 0.92758 1.21795 1.07559 0.93383 1.00640 1.23794 1.04880 0.99606 0.84680 1.83989 1.65778 1.31022 1.26478 1.17440 0.86049 0.83580 1.10260 1.91491 1.76199 1.48246 1.94055 0.92446 0.92305 0.88851 0.81925 0.82911 0.90999 0.90637 0.94350 0.94491 0.92654 0.90331 0.91137 0.82988 0.84251 0.79014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.38 101.05 1.05 1.54 16 2 O -0.31 -4.86 10.35 -18.89 -0.20 -5.06 16 3 C 0.28 4.81 7.50 -17.07 -0.13 4.69 16 4 N -0.52 -8.40 9.22 -13.27 -0.12 -8.53 16 5 C 0.12 1.77 11.17 -17.56 -0.20 1.58 16 6 C -0.16 -2.56 8.99 -39.44 -0.35 -2.91 16 7 C -0.02 -0.29 4.93 -104.29 -0.51 -0.81 16 8 C 0.09 1.70 4.78 -4.97 -0.02 1.68 16 9 N -0.53 -10.92 4.62 -238.96 -1.10 -12.03 16 10 C 0.18 4.30 4.72 -4.98 -0.02 4.28 16 11 C -0.55 -13.50 7.28 -34.44 -0.25 -13.75 16 12 H 0.06 1.35 6.00 -52.49 -0.32 1.03 16 13 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 14 N -0.88 -24.12 13.29 55.43 0.74 -23.38 16 15 Si 0.88 19.75 29.54 -169.99 -5.02 14.73 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 C 0.14 2.61 5.27 -4.98 -0.03 2.58 16 20 C 0.01 0.26 6.23 -35.63 -0.22 0.04 16 21 C -0.19 -3.77 9.37 -39.71 -0.37 -4.15 16 22 C -0.21 -3.64 10.91 -39.71 -0.43 -4.07 16 23 C -0.06 -0.98 12.09 29.41 0.36 -0.62 16 24 O -0.18 -3.32 10.65 5.70 0.06 -3.26 16 25 C 0.05 0.90 7.30 -39.14 -0.29 0.61 16 26 F -0.12 -2.28 16.64 2.25 0.04 -2.24 16 27 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 28 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.16 1.91 8.06 -52.48 -0.42 1.49 16 31 H 0.15 2.52 8.06 -52.48 -0.42 2.10 16 32 H 0.07 1.16 7.61 -51.93 -0.40 0.77 16 33 H 0.08 1.39 6.41 -51.93 -0.33 1.06 16 34 H 0.04 1.02 6.30 -51.93 -0.33 0.70 16 35 H 0.04 0.96 6.89 -51.93 -0.36 0.60 16 36 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.08 1.50 6.21 -51.93 -0.32 1.18 16 38 H 0.07 1.18 7.83 -51.93 -0.41 0.77 16 39 H 0.15 3.20 8.06 -52.48 -0.42 2.78 16 40 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 41 H 0.19 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 352.20 15.07 5.31 5.31 Total: -1.00 -29.56 352.20 -6.79 -36.35 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -4.97 Total: 5.68 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -1.52 Total: -7.58 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: -0.49 Total: -43.93 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -0.13 Total: -8.32 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.56 -6.79 -36.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891464927.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.300 kcal (2) G-P(sol) polarization free energy of solvation -29.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds