Wall clock time and date at job start Tue Mar 31 2020 13:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35728 * 116.99943 * 2 1 4 4 N 1.32222 * 119.69891 * 359.97438 * 3 2 1 5 5 C 1.31960 * 121.67161 * 180.02562 * 4 3 2 6 6 C 1.38060 * 120.88050 * 359.71554 * 5 4 3 7 7 C 1.38791 * 119.30532 * 0.55748 * 6 5 4 8 8 C 1.50705 * 120.76877 * 179.72659 * 7 6 5 9 9 N 1.46899 * 109.47223 * 259.72782 * 8 7 6 10 10 C 1.46896 * 111.00359 * 75.56490 * 9 8 7 11 11 C 1.50704 * 109.47290 * 63.86271 * 10 9 8 12 12 H 1.08001 * 119.99689 * 4.87222 * 11 10 9 13 13 C 1.37877 * 120.00195 * 184.87741 * 11 10 9 14 14 N 1.31513 * 119.99995 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99719 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47360 * 59.99710 * 15 13 11 17 17 H 1.48508 * 109.47113 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47279 * 299.99457 * 15 13 11 19 19 C 1.46896 * 110.99869 * 199.52379 * 9 8 7 20 20 C 1.50704 * 109.47241 * 170.00131 * 19 9 8 21 21 C 1.34506 * 125.79566 * 89.71152 * 20 19 9 22 22 C 1.41383 * 106.84347 * 179.89120 * 21 20 19 23 23 C 1.34505 * 106.83975 * 0.36969 * 22 21 20 24 24 O 1.34302 * 125.78478 * 270.02231 * 20 19 9 25 25 C 1.38577 * 118.46704 * 359.45938 * 7 6 5 26 26 F 1.35096 * 120.46772 * 180.29466 * 25 7 6 27 27 H 1.08997 * 109.47119 * 299.99778 * 1 2 3 28 28 H 1.08999 * 109.47641 * 60.00180 * 1 2 3 29 29 H 1.09000 * 109.47039 * 180.02562 * 1 2 3 30 30 H 1.08005 * 119.55786 * 179.97438 * 5 4 3 31 31 H 1.08005 * 120.34610 * 180.28735 * 6 5 4 32 32 H 1.08992 * 109.47431 * 139.72321 * 8 7 6 33 33 H 1.09002 * 109.46643 * 19.72204 * 8 7 6 34 34 H 1.09004 * 109.47040 * 183.86213 * 10 9 8 35 35 H 1.09005 * 109.47415 * 303.86194 * 10 9 8 36 36 H 0.96999 * 119.99811 * 179.97438 * 14 13 11 37 37 H 1.09002 * 109.47007 * 289.99071 * 19 9 8 38 38 H 1.08994 * 109.47786 * 49.99628 * 19 9 8 39 39 H 1.08010 * 126.57742 * 0.02613 * 21 20 19 40 40 H 1.07999 * 126.57870 * 180.16271 * 22 21 20 41 41 H 1.08001 * 125.79521 * 179.74917 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 7 1.3192 2.3144 -0.0005 5 6 1.8774 3.5102 -0.0010 6 6 3.2508 3.6510 0.0048 7 6 4.0501 2.5163 -0.0005 8 6 5.5527 2.6317 -0.0005 9 7 6.0594 2.4290 -1.3644 10 6 5.8210 3.6158 -2.1965 11 6 6.6009 4.7812 -1.6446 12 1 7.2732 4.6353 -0.8120 13 6 6.4562 6.0338 -2.2024 14 7 5.6379 6.2114 -3.2165 15 14 7.4235 7.4781 -1.5187 16 1 8.8775 7.1994 -1.6348 17 1 7.0921 8.7044 -2.2879 18 1 7.0704 7.6786 -0.0903 19 6 7.4848 2.0744 -1.3491 20 6 7.9085 1.6368 -2.7276 21 6 8.3835 2.4398 -3.6965 22 6 8.6550 1.6171 -4.8139 23 6 8.3218 0.3619 -4.4637 24 8 7.8702 0.3798 -3.1989 25 6 3.4345 1.2748 0.0000 26 9 4.1735 0.1438 0.0010 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.2515 4.3904 -0.0019 31 1 3.6986 4.6338 0.0090 32 1 5.9753 1.8750 0.6603 33 1 5.8409 3.6226 0.3505 34 1 6.1433 3.4140 -3.2180 35 1 4.7576 3.8554 -2.1917 36 1 5.5358 7.0927 -3.6087 37 1 8.0718 2.9417 -1.0469 38 1 7.6493 1.2605 -0.6430 39 1 8.5315 3.5078 -3.6324 40 1 9.0504 1.9360 -5.7669 41 1 8.4032 -0.5121 -5.0929 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891464927.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:00 Heat of formation + Delta-G solvation = -36.664213 kcal Electronic energy + Delta-G solvation = -27231.646199 eV Core-core repulsion = 23221.105810 eV Total energy + Delta-G solvation = -4010.540389 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.81532 -43.33702 -41.53530 -39.40293 -38.33832 -34.66879 -34.09557 -33.55514 -31.49329 -31.16165 -29.32091 -28.27732 -27.28571 -25.99883 -24.38620 -23.66387 -22.50839 -22.01055 -21.06684 -19.23292 -18.76812 -18.47582 -18.26324 -17.88321 -17.52918 -17.09453 -16.74682 -16.18526 -16.07301 -15.77512 -15.65709 -15.62380 -15.26287 -14.59461 -14.42545 -14.10923 -13.99247 -13.70555 -13.64260 -13.52339 -13.35082 -12.93868 -12.84523 -12.70230 -12.50022 -12.29508 -12.25892 -12.18438 -11.98250 -11.70347 -10.86955 -10.71471 -10.56772 -10.50897 -9.41215 -9.34793 -9.02792 -8.08315 -6.25753 -0.06046 0.07587 0.93062 1.42644 1.44915 1.50685 1.81564 1.93056 2.24997 2.42394 2.57351 3.13640 3.19021 3.29754 3.42813 3.74192 3.91224 3.98417 4.03567 4.26650 4.30132 4.44020 4.44361 4.46033 4.54083 4.58608 4.68893 4.75234 4.82967 4.95214 5.04602 5.17722 5.18766 5.26059 5.36061 5.38312 5.44678 5.72113 5.81980 6.02035 6.12861 6.22733 6.35506 6.39555 6.64984 6.91693 7.44834 8.94869 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010002 B = 0.005226 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.902057 B = 5356.622365 C = 7433.513403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.320 6.320 3 C 0.278 3.722 4 N -0.522 5.522 5 C 0.130 3.870 6 C -0.165 4.165 7 C -0.026 4.026 8 C 0.097 3.903 9 N -0.540 5.540 10 C 0.204 3.796 11 C -0.546 4.546 12 H 0.064 0.936 13 C 0.026 3.974 14 N -0.921 5.921 15 Si 0.945 3.055 16 H -0.275 1.275 17 H -0.291 1.291 18 H -0.265 1.265 19 C 0.140 3.860 20 C -0.007 4.007 21 C -0.210 4.210 22 C -0.230 4.230 23 C -0.044 4.044 24 O -0.188 6.188 25 C 0.028 3.972 26 F -0.130 7.130 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.125 0.875 30 H 0.199 0.801 31 H 0.150 0.850 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.005 0.995 35 H 0.011 0.989 36 H 0.262 0.738 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.128 0.872 40 H 0.163 0.837 41 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.621 -8.908 5.469 11.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.227 6.227 3 C 0.098 3.902 4 N -0.246 5.246 5 C -0.024 4.024 6 C -0.186 4.186 7 C -0.035 4.035 8 C -0.030 4.030 9 N -0.263 5.263 10 C 0.077 3.923 11 C -0.585 4.585 12 H 0.082 0.918 13 C -0.174 4.174 14 N -0.560 5.560 15 Si 0.771 3.229 16 H -0.201 1.201 17 H -0.217 1.217 18 H -0.190 1.190 19 C 0.013 3.987 20 C -0.057 4.057 21 C -0.230 4.230 22 C -0.249 4.249 23 C -0.111 4.111 24 O -0.085 6.085 25 C 0.005 3.995 26 F -0.109 7.109 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.143 0.857 30 H 0.215 0.785 31 H 0.167 0.833 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.023 0.977 35 H 0.030 0.970 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.146 0.854 40 H 0.180 0.820 41 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -4.829 -9.824 5.322 12.172 hybrid contribution 1.690 1.967 -0.079 2.594 sum -3.139 -7.857 5.243 9.954 Atomic orbital electron populations 1.23132 0.75143 1.04890 1.02615 1.86264 1.25031 1.23457 1.87984 1.19910 0.87813 0.86518 0.96007 1.67448 1.39452 0.98477 1.19207 1.22922 0.92863 0.94099 0.92562 1.22118 0.94623 0.99454 1.02363 1.20329 0.97770 0.90660 0.94759 1.20881 0.88632 1.02557 0.90916 1.62348 1.15070 1.38252 1.10678 1.19447 0.95605 0.85076 0.92123 1.21776 1.25625 0.94218 1.16854 0.91819 1.25587 0.95828 1.01078 0.94937 1.70068 1.37780 1.23689 1.24452 0.85819 0.79253 0.78991 0.78871 1.20072 1.21651 1.18990 1.20382 0.89492 0.99832 0.89012 1.22350 1.03756 0.81465 0.98141 1.21718 1.06490 1.00339 0.94487 1.22086 1.08387 0.93545 1.00926 1.24727 1.01941 1.00813 0.83603 1.83987 1.66148 1.30421 1.27895 1.17580 0.86689 0.83379 1.11852 1.91455 1.76463 1.48628 1.94326 0.91729 0.92448 0.85701 0.78454 0.83274 0.89072 0.91196 0.97729 0.97045 0.92884 0.91002 0.88820 0.85365 0.81956 0.74194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.38 113.37 1.18 1.94 16 2 O -0.32 -9.83 10.35 -90.51 -0.94 -10.77 16 3 C 0.28 9.35 7.50 84.84 0.64 9.99 16 4 N -0.52 -16.12 9.22 -308.76 -2.85 -18.96 16 5 C 0.13 3.72 11.17 84.63 0.95 4.67 16 6 C -0.16 -5.40 8.99 22.36 0.20 -5.20 16 7 C -0.03 -0.94 4.93 -19.65 -0.10 -1.03 16 8 C 0.10 3.51 4.78 85.56 0.41 3.92 16 9 N -0.54 -22.42 4.62 -909.94 -4.21 -26.62 16 10 C 0.20 10.02 4.72 85.56 0.40 10.42 16 11 C -0.55 -27.03 7.28 25.60 0.19 -26.84 16 12 H 0.06 3.03 6.00 -2.91 -0.02 3.01 16 13 C 0.03 1.34 5.46 84.65 0.46 1.80 16 14 N -0.92 -51.42 13.29 21.45 0.28 -51.14 16 15 Si 0.94 40.71 29.54 68.60 2.03 42.74 16 16 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 17 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 18 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 19 C 0.14 5.30 5.27 85.56 0.45 5.75 16 20 C -0.01 -0.27 6.23 24.83 0.15 -0.12 16 21 C -0.21 -8.46 9.37 22.19 0.21 -8.26 16 22 C -0.23 -7.61 10.91 22.19 0.24 -7.37 16 23 C -0.04 -1.29 12.09 66.97 0.81 -0.48 16 24 O -0.19 -6.88 10.65 -2.51 -0.03 -6.91 16 25 C 0.03 1.00 7.30 22.56 0.16 1.16 16 26 F -0.13 -4.88 16.64 44.97 0.75 -4.13 16 27 H 0.06 1.26 8.10 -2.39 -0.02 1.25 16 28 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 29 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.20 4.13 8.06 -2.91 -0.02 4.11 16 31 H 0.15 4.96 8.06 -2.91 -0.02 4.93 16 32 H 0.09 2.89 7.61 -2.39 -0.02 2.88 16 33 H 0.07 2.59 6.41 -2.39 -0.02 2.57 16 34 H 0.00 0.26 6.30 -2.39 -0.02 0.24 16 35 H 0.01 0.62 6.89 -2.38 -0.02 0.60 16 36 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 37 H 0.07 2.78 6.21 -2.39 -0.01 2.77 16 38 H 0.09 3.06 7.83 -2.39 -0.02 3.04 16 39 H 0.13 5.70 8.06 -2.91 -0.02 5.68 16 40 H 0.16 4.45 8.06 -2.91 -0.02 4.42 16 41 H 0.24 4.44 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -64.84 352.20 2.46 -62.39 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 1.06 Total: 23.04 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 6.35 Total: -9.64 kcal Atomic # 7 Polarization: -89.95 SS G_CDS: -6.77 Total: -96.72 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.96 Total: -17.67 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.75 Total: -4.13 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -64.84 2.46 -62.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891464927.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.722 kcal (2) G-P(sol) polarization free energy of solvation -64.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds