Wall clock time and date at job start Tue Mar 31 2020 13:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99977 * 2 1 4 4 H 1.48506 * 109.46567 * 269.99955 * 3 2 1 5 5 H 1.48490 * 109.47379 * 29.99935 * 3 2 1 6 6 H 1.48504 * 109.46897 * 150.00487 * 3 2 1 7 7 C 1.37875 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00356 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00068 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.47054 * 179.97438 * 9 7 2 11 11 C 1.42898 * 113.99826 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47310 * 180.02562 * 11 10 9 13 13 O 1.45206 * 109.46750 * 65.00641 * 12 11 10 14 14 C 1.34228 * 116.99743 * 180.02562 * 13 12 11 15 15 O 1.20823 * 120.00603 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99525 * 179.97438 * 14 13 12 17 17 C 1.50700 * 109.86919 * 276.00096 * 16 14 13 18 18 C 1.38235 * 120.00037 * 269.02557 * 17 16 14 19 19 C 1.38234 * 119.99707 * 179.79075 * 18 17 16 20 20 C 1.38236 * 120.00093 * 0.46270 * 19 18 17 21 21 C 1.38234 * 119.99852 * 359.77198 * 20 19 18 22 22 C 1.38233 * 120.00164 * 0.02562 * 21 20 19 23 23 C 1.54100 * 109.87399 * 154.99562 * 16 14 13 24 24 C 1.54810 * 104.18994 * 242.60419 * 23 16 14 25 25 C 1.54999 * 102.08695 * 20.88229 * 24 23 16 26 26 O 1.43741 * 109.88027 * 37.16783 * 16 14 13 27 27 H 0.97003 * 119.99834 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47075 * 60.00116 * 9 7 2 29 29 H 1.08998 * 109.47381 * 300.00064 * 9 7 2 30 30 H 1.09002 * 109.47113 * 60.00646 * 11 10 9 31 31 H 1.09002 * 109.47687 * 300.00541 * 11 10 9 32 32 H 1.09001 * 109.47068 * 305.00820 * 12 11 10 33 33 H 1.08999 * 109.47456 * 185.00067 * 12 11 10 34 34 H 1.07991 * 119.99973 * 0.02562 * 18 17 16 35 35 H 1.07995 * 119.99792 * 180.25911 * 19 18 17 36 36 H 1.08000 * 120.00442 * 179.78807 * 20 19 18 37 37 H 1.08005 * 119.99970 * 179.97438 * 21 20 19 38 38 H 1.08005 * 120.00311 * 179.97438 * 22 21 20 39 39 H 1.08996 * 110.49020 * 1.28315 * 23 16 14 40 40 H 1.09004 * 110.48678 * 123.92684 * 23 16 14 41 41 H 1.08997 * 110.90882 * 139.07837 * 24 23 16 42 42 H 1.08998 * 110.90685 * 262.68640 * 24 23 16 43 43 H 1.08998 * 110.61399 * 81.48682 * 25 24 23 44 44 H 1.09006 * 110.61608 * 204.47030 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 8 2.1796 -3.5853 0.0015 11 6 1.5650 -4.8754 0.0031 12 6 2.6479 -5.9562 0.0033 13 8 3.3999 -5.8875 1.2436 14 6 4.3947 -6.7745 1.4029 15 8 4.6291 -7.5819 0.5351 16 6 5.2193 -6.7633 2.6643 17 6 6.3211 -5.7419 2.5469 18 6 7.5557 -6.1114 2.0467 19 6 8.5650 -5.1735 1.9350 20 6 8.3427 -3.8683 2.3324 21 6 7.1097 -3.4999 2.8371 22 6 6.0991 -4.4369 2.9449 23 6 5.8232 -8.1599 2.9079 24 6 5.1994 -8.6144 4.2498 25 6 3.9399 -7.7158 4.3430 26 8 4.3828 -6.4569 3.7924 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5575 -0.8880 29 1 0.6247 -2.5564 0.8919 30 1 0.9439 -4.9831 -0.8862 31 1 0.9457 -4.9818 0.8938 32 1 3.3209 -5.7964 -0.8390 33 1 2.1818 -6.9376 -0.0850 34 1 7.7305 -7.1319 1.7397 35 1 9.5282 -5.4612 1.5403 36 1 9.1323 -3.1362 2.2483 37 1 6.9361 -2.4802 3.1480 38 1 5.1358 -4.1492 3.3397 39 1 5.5420 -8.8424 2.1059 40 1 6.9081 -8.0969 2.9934 41 1 4.9234 -9.6683 4.2134 42 1 5.8783 -8.4200 5.0800 43 1 3.1273 -8.1310 3.7470 44 1 3.6317 -7.5934 5.3815 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924422784.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:42 Heat of formation + Delta-G solvation = -146.324316 kcal Electronic energy + Delta-G solvation = -27337.163809 eV Core-core repulsion = 23413.035756 eV Total energy + Delta-G solvation = -3924.128054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.27896 -39.39728 -38.46856 -37.03272 -36.04245 -32.85199 -32.75549 -32.19914 -30.81349 -30.11698 -28.33538 -26.91652 -24.79828 -23.04800 -22.80677 -22.33146 -21.86037 -21.35805 -20.04796 -17.94738 -17.68707 -17.02379 -16.47565 -16.36457 -16.06469 -15.65907 -15.15719 -14.95052 -14.75594 -14.63031 -14.30569 -13.96249 -13.81433 -13.38570 -13.35288 -12.92788 -12.75622 -12.62829 -12.24455 -12.03842 -11.95431 -11.53452 -11.43785 -11.38794 -11.04256 -11.00108 -10.94308 -10.86234 -10.81733 -10.67339 -10.35562 -10.05083 -9.87456 -9.10589 -8.91666 -8.87199 -8.82628 -8.18740 -6.09900 -4.11200 1.15651 1.40796 2.18375 2.71516 3.31441 3.36252 3.38127 3.41993 3.74913 4.17747 4.31558 4.34236 4.55023 4.65585 4.75717 4.85985 4.88767 4.96375 4.99597 5.17659 5.22835 5.26788 5.32693 5.40698 5.43826 5.47483 5.49270 5.54724 5.65112 5.72919 5.87763 5.88175 5.93780 6.03224 6.10554 6.34391 6.39075 6.53242 6.55415 6.64807 6.95066 7.07888 7.42370 7.79110 7.81183 8.14979 8.55270 9.01506 9.53392 11.01772 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.012279 B = 0.003756 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.770510 B = 7453.372745 C = 8762.206082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.389 6.389 11 C 0.063 3.937 12 C 0.070 3.930 13 O -0.321 6.321 14 C 0.457 3.543 15 O -0.509 6.509 16 C 0.164 3.836 17 C -0.095 4.095 18 C -0.106 4.106 19 C -0.127 4.127 20 C -0.110 4.110 21 C -0.119 4.119 22 C -0.071 4.071 23 C -0.145 4.145 24 C -0.153 4.153 25 C 0.038 3.962 26 O -0.336 6.336 27 H 0.264 0.736 28 H 0.005 0.995 29 H 0.007 0.993 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.137 0.863 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.224 -17.576 8.563 23.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.551 4.551 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.309 6.309 11 C -0.015 4.015 12 C -0.004 4.004 13 O -0.236 6.236 14 C 0.299 3.701 15 O -0.399 6.399 16 C 0.123 3.877 17 C -0.096 4.096 18 C -0.124 4.124 19 C -0.145 4.145 20 C -0.128 4.128 21 C -0.137 4.137 22 C -0.089 4.089 23 C -0.182 4.182 24 C -0.190 4.190 25 C -0.038 4.038 26 O -0.255 6.255 27 H 0.073 0.927 28 H 0.023 0.977 29 H 0.025 0.975 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.155 0.845 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 13.231 -17.418 8.360 23.416 hybrid contribution -0.106 0.643 -0.362 0.746 sum 13.125 -16.774 7.998 22.751 Atomic orbital electron populations 1.69963 1.06099 1.27145 1.50647 1.24936 0.94966 0.99394 0.95143 0.86342 0.79721 0.82258 0.78227 1.20483 1.21058 1.19569 1.21043 0.94091 0.89274 1.50708 0.91526 1.20235 0.88751 0.83528 0.95457 1.87927 1.35243 1.12547 1.95205 1.22296 0.93156 0.85506 1.00507 1.23277 0.93806 0.98820 0.84494 1.86690 1.42617 1.53285 1.40982 1.23971 0.79194 0.77996 0.88905 1.90619 1.67659 1.38370 1.43236 1.20490 0.88109 0.95683 0.83438 1.19242 0.93026 0.94045 1.03250 1.21007 0.92313 0.99948 0.99111 1.21050 0.99023 0.93434 1.00986 1.21258 0.97314 0.96217 0.97966 1.21263 0.93111 0.99824 0.99487 1.21155 0.99868 0.91665 0.96217 1.23198 1.02417 0.93474 0.99143 1.23187 0.97628 1.00745 0.97480 1.23733 0.96164 0.83769 1.00166 1.89080 1.65665 1.27943 1.42779 0.92664 0.97683 0.97480 0.91986 0.93163 0.90527 0.90506 0.85568 0.85814 0.85883 0.85346 0.84527 0.88347 0.88429 0.89590 0.89860 0.91850 0.87837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.91 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.51 -15.36 9.43 -34.44 -0.32 -15.68 16 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.19 5.43 5.69 36.01 0.20 5.63 16 10 O -0.39 -9.76 10.30 -38.79 -0.40 -10.16 16 11 C 0.06 1.21 6.33 37.16 0.24 1.44 16 12 C 0.07 1.19 5.85 37.16 0.22 1.40 16 13 O -0.32 -5.94 9.99 -45.67 -0.46 -6.39 16 14 C 0.46 7.53 6.76 36.01 0.24 7.77 16 15 O -0.51 -8.72 15.30 -18.75 -0.29 -9.01 16 16 C 0.16 2.25 0.95 -92.35 -0.09 2.16 16 17 C -0.10 -1.33 4.84 -104.62 -0.51 -1.84 16 18 C -0.11 -1.27 8.73 -39.58 -0.35 -1.61 16 19 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 20 C -0.11 -1.26 10.05 -39.58 -0.40 -1.65 16 21 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 22 C -0.07 -1.06 9.36 -39.58 -0.37 -1.43 16 23 C -0.15 -1.47 5.63 -25.20 -0.14 -1.61 16 24 C -0.15 -1.21 7.15 -24.72 -0.18 -1.38 16 25 C 0.04 0.37 7.66 38.21 0.29 0.67 16 26 O -0.34 -4.66 9.76 -47.51 -0.46 -5.12 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.33 8.13 -51.93 -0.42 0.91 16 33 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 34 H 0.13 1.26 6.43 -52.49 -0.34 0.92 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 37 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 38 H 0.14 2.18 7.56 -52.48 -0.40 1.79 16 39 H 0.10 1.04 6.72 -51.93 -0.35 0.69 16 40 H 0.10 0.84 5.76 -51.93 -0.30 0.54 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 371.67 15.07 5.60 5.60 Total: -1.00 -34.59 371.67 -8.76 -43.35 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.42 Total: -0.61 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -2.05 Total: -8.34 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 0.74 Total: -26.35 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -1.61 Total: -30.68 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.59 -8.76 -43.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924422784.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.970 kcal (2) G-P(sol) polarization free energy of solvation -34.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds