Wall clock time and date at job start Tue Mar 31 2020 12:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46858 * 2 1 4 4 C 1.46508 * 119.99971 * 269.99972 * 3 2 1 5 5 C 1.50695 * 109.47027 * 270.00367 * 4 3 2 6 6 H 1.07998 * 120.00444 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00140 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00670 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99966 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47282 * 89.99704 * 9 7 5 11 11 H 1.48498 * 109.47343 * 210.00391 * 9 7 5 12 12 H 1.48501 * 109.46924 * 330.00188 * 9 7 5 13 13 C 1.34773 * 120.00280 * 90.00182 * 3 2 1 14 14 O 1.21278 * 120.00359 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99692 * 359.97438 * 13 3 2 16 16 C 1.53002 * 109.46916 * 179.97438 * 15 13 3 17 17 H 1.08991 * 110.45862 * 307.59362 * 16 15 13 18 18 C 1.51141 * 110.50489 * 184.99612 * 16 15 13 19 19 C 1.37746 * 132.82172 * 61.31869 * 18 16 15 20 20 C 1.38370 * 119.95513 * 179.72221 * 19 18 16 21 21 C 1.38305 * 119.84938 * 0.58749 * 20 19 18 22 22 C 1.38114 * 120.34170 * 359.41769 * 21 20 19 23 23 F 1.35098 * 119.95812 * 180.27609 * 22 21 20 24 24 C 1.38811 * 106.35727 * 241.35129 * 18 16 15 25 25 N 1.39648 * 110.23155 * 0.02562 * 24 18 16 26 26 C 1.34370 * 112.21822 * 0.02562 * 25 24 18 27 27 O 1.21290 * 126.44276 * 179.97438 * 26 25 24 28 28 H 1.09003 * 109.47297 * 59.99969 * 1 2 3 29 29 H 1.08996 * 109.46678 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47223 * 299.99919 * 1 2 3 31 31 H 1.09000 * 109.47223 * 240.00081 * 2 1 3 32 32 H 1.08990 * 109.47288 * 119.99748 * 2 1 3 33 33 H 1.09003 * 109.47055 * 30.00187 * 4 3 2 34 34 H 1.08992 * 109.46865 * 149.99934 * 4 3 2 35 35 H 0.97000 * 120.00332 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.47228 * 60.00264 * 15 13 3 37 37 H 1.08997 * 109.47500 * 299.99847 * 15 13 3 38 38 H 1.08000 * 120.02433 * 0.02562 * 19 18 16 39 39 H 1.08003 * 120.07509 * 180.28225 * 20 19 18 40 40 H 1.08002 * 119.83330 * 179.69869 * 21 20 19 41 41 H 0.97007 * 123.89122 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2310 -1.0959 7 6 4.1493 2.3905 -2.8775 8 7 5.3915 2.1843 -3.2570 9 14 3.0130 3.4361 -3.9288 10 1 3.1155 4.8562 -3.5069 11 1 3.4065 3.3138 -5.3554 12 1 1.6134 2.9694 -3.7597 13 6 2.2429 2.0166 1.1671 14 8 2.6476 3.1599 1.1672 15 6 1.9913 1.3064 2.4722 16 6 2.3235 2.2436 3.6351 17 1 3.3270 2.6530 3.5198 18 6 2.1966 1.5163 4.9540 19 6 2.8423 0.4218 5.4856 20 6 2.5122 -0.0273 6.7520 21 6 1.5256 0.6175 7.4757 22 6 0.8761 1.7151 6.9456 23 9 -0.0826 2.3424 7.6615 24 6 1.2084 2.1768 5.6711 25 7 0.7051 3.2462 4.9274 26 6 1.3001 3.3554 3.7276 27 8 1.0624 4.1884 2.8786 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8899 33 1 1.5816 1.6878 -2.0284 34 1 2.0954 3.1410 -1.1384 35 1 5.7175 2.5748 -4.0829 36 1 2.6212 0.4187 2.5302 37 1 0.9433 1.0126 2.5299 38 1 3.6091 -0.0824 4.9162 39 1 3.0204 -0.8825 7.1725 40 1 1.2647 0.2637 8.4622 41 1 0.0059 3.8413 5.2406 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930464064.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:58 Heat of formation + Delta-G solvation = -73.700513 kcal Electronic energy + Delta-G solvation = -26952.105007 eV Core-core repulsion = 22939.958604 eV Total energy + Delta-G solvation = -4012.146403 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.18708 -41.76228 -39.08013 -38.38278 -35.83159 -35.37497 -33.52509 -32.60789 -30.42800 -30.06549 -29.48124 -27.91740 -25.96576 -23.01365 -22.95241 -22.44223 -21.89024 -20.65665 -18.50099 -18.34560 -17.54428 -16.88141 -16.63191 -16.38842 -16.28839 -15.96810 -15.66649 -15.40093 -15.08657 -14.67852 -14.09918 -13.90506 -13.47633 -13.45430 -13.35893 -13.07074 -12.78244 -12.62563 -12.32595 -12.25014 -12.13670 -11.98017 -11.73695 -11.44828 -11.28485 -11.10446 -10.92085 -10.68942 -10.45032 -10.12976 -9.95546 -9.50003 -9.19217 -8.88629 -8.55119 -8.32027 -7.65212 -6.05696 -4.03770 0.72307 0.75621 2.41672 2.71673 3.26526 3.32760 3.38662 3.40780 3.41943 3.70261 3.89210 3.91298 4.19402 4.43529 4.48091 4.56412 4.81547 4.90148 5.01981 5.10865 5.24136 5.28715 5.32061 5.50417 5.55044 5.56887 5.63651 5.70721 5.81686 5.87207 5.98982 6.02317 6.16500 6.28372 6.41287 6.54323 6.67140 6.75991 7.02898 7.40804 7.65731 7.95142 8.30228 8.50868 8.96365 9.05069 9.55534 11.07651 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.021543 B = 0.003277 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.386887 B = 8543.568785 C = 8783.992470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.594 5.594 4 C 0.217 3.783 5 C -0.526 4.526 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.875 3.125 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.501 3.499 14 O -0.515 6.515 15 C -0.118 4.118 16 C -0.066 4.066 17 H 0.139 0.861 18 C -0.109 4.109 19 C -0.070 4.070 20 C -0.115 4.115 21 C -0.120 4.120 22 C 0.071 3.929 23 F -0.141 7.141 24 C 0.121 3.879 25 N -0.665 5.665 26 C 0.529 3.471 27 O -0.453 6.453 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.028 0.972 34 H 0.037 0.963 35 H 0.264 0.736 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.816 -8.440 21.703 25.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.564 4.564 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.538 5.538 9 Si 0.702 3.298 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.287 3.713 14 O -0.390 6.390 15 C -0.158 4.158 16 C -0.087 4.087 17 H 0.156 0.844 18 C -0.112 4.112 19 C -0.088 4.088 20 C -0.134 4.134 21 C -0.139 4.139 22 C 0.049 3.951 23 F -0.120 7.120 24 C 0.022 3.978 25 N -0.310 5.310 26 C 0.315 3.685 27 O -0.322 6.322 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.124 0.876 37 H 0.109 0.891 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.160 0.840 41 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -9.572 -7.242 20.912 24.112 hybrid contribution -1.050 0.868 -0.238 1.383 sum -10.622 -6.374 20.674 24.101 Atomic orbital electron populations 1.22242 0.96972 1.01472 1.02189 1.21432 0.93268 0.84009 1.03048 1.47874 1.64581 1.13268 1.06937 1.19626 0.97164 0.93488 0.80050 1.21331 0.95352 1.32730 1.07034 0.90754 1.24844 0.94971 0.95792 0.97388 1.69893 1.15119 1.45145 1.23597 0.86865 0.81515 0.81737 0.79673 1.19893 1.21140 1.19101 1.20085 0.79256 0.87090 0.84890 1.90756 1.44236 1.17233 1.86781 1.21537 1.03886 0.98774 0.91615 1.20512 1.02349 0.94121 0.91764 0.84393 1.19814 0.97774 0.97652 0.95988 1.20450 0.98858 0.94296 0.95236 1.20936 0.97681 1.00694 0.94109 1.20910 0.97195 0.94471 1.01314 1.17013 0.93152 0.96303 0.88678 1.91491 1.61451 1.81568 1.77447 1.18148 0.96654 0.91023 0.91966 1.43874 1.39894 1.29924 1.17297 1.20500 0.81912 0.85773 0.80292 1.90925 1.63721 1.36747 1.40769 0.92214 0.91999 0.93199 0.89705 0.91442 0.95423 0.94535 0.92623 0.87636 0.89140 0.84270 0.84196 0.84043 0.74901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.16 0.38 -1.79 16 2 C 0.11 1.61 5.93 -4.04 -0.02 1.59 16 3 N -0.59 -12.14 2.46 -175.06 -0.43 -12.57 16 4 C 0.22 5.40 4.23 -5.19 -0.02 5.38 16 5 C -0.53 -15.15 9.94 -34.44 -0.34 -15.49 16 6 H 0.07 2.32 8.06 -52.49 -0.42 1.89 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 9 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 10 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 C 0.50 10.09 7.37 -10.99 -0.08 10.00 16 14 O -0.51 -12.77 13.54 -15.55 -0.21 -12.98 16 15 C -0.12 -1.62 3.76 -27.88 -0.10 -1.72 16 16 C -0.07 -0.89 2.60 -92.37 -0.24 -1.13 16 17 H 0.14 1.99 7.90 -51.93 -0.41 1.58 16 18 C -0.11 -1.12 5.67 -104.37 -0.59 -1.71 16 19 C -0.07 -0.53 10.03 -39.71 -0.40 -0.93 16 20 C -0.12 -0.70 10.06 -39.51 -0.40 -1.10 16 21 C -0.12 -0.83 9.99 -39.60 -0.40 -1.23 16 22 C 0.07 0.66 7.32 -39.13 -0.29 0.38 16 23 F -0.14 -1.41 17.27 2.25 0.04 -1.37 16 24 C 0.12 1.29 7.09 -83.59 -0.59 0.70 16 25 N -0.66 -7.92 5.89 -9.64 -0.06 -7.98 16 26 C 0.53 8.20 7.83 -10.83 -0.08 8.12 16 27 O -0.45 -9.17 15.96 -15.56 -0.25 -9.42 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.62 7.22 -51.93 -0.37 0.24 16 31 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 32 H 0.07 0.82 6.44 -51.93 -0.33 0.48 16 33 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 34 H 0.04 0.99 6.85 -51.93 -0.36 0.64 16 35 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 36 H 0.11 1.15 7.40 -51.93 -0.38 0.77 16 37 H 0.09 1.10 7.17 -51.93 -0.37 0.73 16 38 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 40 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.41 4.19 8.96 -40.82 -0.37 3.82 16 LS Contribution 348.81 15.07 5.26 5.26 Total: -1.00 -36.93 348.81 -7.92 -44.85 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.09 Total: 0.81 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -3.28 Total: 3.09 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.29 Total: -47.62 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.46 Total: -22.40 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.93 -7.92 -44.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930464064.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.852 kcal (2) G-P(sol) polarization free energy of solvation -36.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds