Wall clock time and date at job start Tue Mar 31 2020 12:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46858 * 2 1 4 4 C 1.46508 * 119.99971 * 269.99972 * 3 2 1 5 5 C 1.50695 * 109.47027 * 270.00367 * 4 3 2 6 6 H 1.07998 * 120.00444 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00140 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00670 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99966 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47282 * 89.99704 * 9 7 5 11 11 H 1.48498 * 109.47343 * 210.00391 * 9 7 5 12 12 H 1.48501 * 109.46924 * 330.00188 * 9 7 5 13 13 C 1.34773 * 120.00280 * 90.00182 * 3 2 1 14 14 O 1.21278 * 120.00359 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99692 * 359.97438 * 13 3 2 16 16 C 1.53002 * 109.46916 * 179.97438 * 15 13 3 17 17 H 1.08991 * 110.45862 * 307.59362 * 16 15 13 18 18 C 1.51141 * 110.50489 * 184.99612 * 16 15 13 19 19 C 1.37746 * 132.82172 * 61.31869 * 18 16 15 20 20 C 1.38370 * 119.95513 * 179.72221 * 19 18 16 21 21 C 1.38305 * 119.84938 * 0.58749 * 20 19 18 22 22 C 1.38114 * 120.34170 * 359.41769 * 21 20 19 23 23 F 1.35098 * 119.95812 * 180.27609 * 22 21 20 24 24 C 1.38811 * 106.35727 * 241.35129 * 18 16 15 25 25 N 1.39648 * 110.23155 * 0.02562 * 24 18 16 26 26 C 1.34370 * 112.21822 * 0.02562 * 25 24 18 27 27 O 1.21290 * 126.44276 * 179.97438 * 26 25 24 28 28 H 1.09003 * 109.47297 * 59.99969 * 1 2 3 29 29 H 1.08996 * 109.46678 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47223 * 299.99919 * 1 2 3 31 31 H 1.09000 * 109.47223 * 240.00081 * 2 1 3 32 32 H 1.08990 * 109.47288 * 119.99748 * 2 1 3 33 33 H 1.09003 * 109.47055 * 30.00187 * 4 3 2 34 34 H 1.08992 * 109.46865 * 149.99934 * 4 3 2 35 35 H 0.97000 * 120.00332 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.47228 * 60.00264 * 15 13 3 37 37 H 1.08997 * 109.47500 * 299.99847 * 15 13 3 38 38 H 1.08000 * 120.02433 * 0.02562 * 19 18 16 39 39 H 1.08003 * 120.07509 * 180.28225 * 20 19 18 40 40 H 1.08002 * 119.83330 * 179.69869 * 21 20 19 41 41 H 0.97007 * 123.89122 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2310 -1.0959 7 6 4.1493 2.3905 -2.8775 8 7 5.3915 2.1843 -3.2570 9 14 3.0130 3.4361 -3.9288 10 1 3.1155 4.8562 -3.5069 11 1 3.4065 3.3138 -5.3554 12 1 1.6134 2.9694 -3.7597 13 6 2.2429 2.0166 1.1671 14 8 2.6476 3.1599 1.1672 15 6 1.9913 1.3064 2.4722 16 6 2.3235 2.2436 3.6351 17 1 3.3270 2.6530 3.5198 18 6 2.1966 1.5163 4.9540 19 6 2.8423 0.4218 5.4856 20 6 2.5122 -0.0273 6.7520 21 6 1.5256 0.6175 7.4757 22 6 0.8761 1.7151 6.9456 23 9 -0.0826 2.3424 7.6615 24 6 1.2084 2.1768 5.6711 25 7 0.7051 3.2462 4.9274 26 6 1.3001 3.3554 3.7276 27 8 1.0624 4.1884 2.8786 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8899 33 1 1.5816 1.6878 -2.0284 34 1 2.0954 3.1410 -1.1384 35 1 5.7175 2.5748 -4.0829 36 1 2.6212 0.4187 2.5302 37 1 0.9433 1.0126 2.5299 38 1 3.6091 -0.0824 4.9162 39 1 3.0204 -0.8825 7.1725 40 1 1.2647 0.2637 8.4622 41 1 0.0059 3.8413 5.2406 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930464064.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:57 Heat of formation + Delta-G solvation = -98.786935 kcal Electronic energy + Delta-G solvation = -26953.192836 eV Core-core repulsion = 22939.958604 eV Total energy + Delta-G solvation = -4013.234232 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.90329 -42.72364 -40.56426 -39.38783 -36.96680 -36.77444 -34.97010 -34.38395 -31.90725 -30.94328 -30.29392 -29.50626 -27.24076 -24.44596 -24.01980 -23.69323 -22.72926 -21.80395 -19.82739 -19.34168 -19.09587 -18.44907 -17.74042 -17.45952 -17.40625 -16.99107 -16.72907 -16.51651 -16.31523 -15.87006 -15.64484 -15.13452 -14.75848 -14.70146 -14.45507 -14.14040 -14.09750 -13.80182 -13.68410 -13.55869 -13.24702 -13.23628 -12.91074 -12.80501 -12.57300 -12.36140 -12.23197 -12.03868 -11.94034 -11.87465 -11.72999 -11.16543 -10.83169 -10.57847 -9.77873 -9.34968 -9.10717 -8.34198 -6.37406 0.00233 0.12668 1.29500 1.34497 1.35483 1.41893 1.80917 1.89822 2.29226 2.30668 2.62552 2.96961 3.00248 3.10720 3.27162 3.70225 3.78546 3.93019 3.97841 4.10198 4.19121 4.35783 4.42790 4.52779 4.53525 4.65992 4.74766 4.82264 4.89788 4.95032 5.00643 5.01663 5.02722 5.31268 5.38227 5.43844 5.48262 5.50491 5.64164 5.70508 5.93662 6.26023 6.63353 6.76418 6.87543 7.23671 7.50982 8.82380 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.021543 B = 0.003277 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.386887 B = 8543.568785 C = 8783.992470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 N -0.604 5.604 4 C 0.227 3.773 5 C -0.529 4.529 6 H 0.036 0.964 7 C 0.014 3.986 8 N -0.942 5.942 9 Si 0.940 3.060 10 H -0.282 1.282 11 H -0.271 1.271 12 H -0.243 1.243 13 C 0.488 3.512 14 O -0.573 6.573 15 C -0.102 4.102 16 C -0.064 4.064 17 H 0.120 0.880 18 C -0.113 4.113 19 C -0.065 4.065 20 C -0.095 4.095 21 C -0.111 4.111 22 C 0.062 3.938 23 F -0.148 7.148 24 C 0.095 3.905 25 N -0.656 5.656 26 C 0.522 3.478 27 O -0.517 6.517 28 H 0.040 0.960 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.043 0.957 34 H 0.008 0.992 35 H 0.268 0.732 36 H 0.143 0.857 37 H 0.113 0.887 38 H 0.162 0.838 39 H 0.179 0.821 40 H 0.170 0.830 41 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.114 -11.573 24.022 28.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.105 3.895 5 C -0.568 4.568 6 H 0.055 0.945 7 C -0.184 4.184 8 N -0.583 5.583 9 Si 0.764 3.236 10 H -0.208 1.208 11 H -0.196 1.196 12 H -0.167 1.167 13 C 0.276 3.724 14 O -0.452 6.452 15 C -0.141 4.141 16 C -0.086 4.086 17 H 0.137 0.863 18 C -0.116 4.116 19 C -0.084 4.084 20 C -0.113 4.113 21 C -0.130 4.130 22 C 0.040 3.960 23 F -0.127 7.127 24 C -0.002 4.002 25 N -0.300 5.300 26 C 0.309 3.691 27 O -0.391 6.391 28 H 0.059 0.941 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.124 0.876 33 H 0.061 0.939 34 H 0.026 0.974 35 H 0.077 0.923 36 H 0.161 0.839 37 H 0.131 0.869 38 H 0.180 0.820 39 H 0.197 0.803 40 H 0.187 0.813 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -10.901 -10.466 23.303 27.774 hybrid contribution -0.562 1.729 -0.774 1.975 sum -11.463 -8.738 22.529 26.745 Atomic orbital electron populations 1.22176 0.94743 1.03596 1.01513 1.21799 0.95050 0.81093 1.04455 1.48018 1.64668 1.15252 1.05597 1.19215 0.94925 0.92604 0.82803 1.21550 0.96882 1.31815 1.06533 0.94525 1.25746 0.96569 0.97124 0.98968 1.70025 1.17101 1.46638 1.24505 0.85826 0.80565 0.79054 0.78174 1.20764 1.19615 1.16680 1.21231 0.77715 0.86732 0.86678 1.90728 1.46678 1.20012 1.87806 1.21520 1.05990 0.99008 0.87605 1.20374 1.00622 0.93910 0.93693 0.86275 1.19637 0.98824 0.98899 0.94217 1.20806 0.98513 0.93031 0.96010 1.21401 0.96347 1.00738 0.92859 1.21335 0.96307 0.92964 1.02367 1.17300 0.93441 0.97062 0.88154 1.91476 1.61861 1.81914 1.77467 1.18336 0.97814 0.91163 0.92923 1.43696 1.39475 1.30386 1.16477 1.20862 0.82207 0.85529 0.80455 1.90881 1.65905 1.39208 1.43078 0.94080 0.88362 0.92747 0.90758 0.87628 0.93890 0.97397 0.92303 0.83939 0.86857 0.82014 0.80335 0.81257 0.74368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 10.24 71.98 0.74 -2.96 16 2 C 0.10 2.78 5.93 86.38 0.51 3.29 16 3 N -0.60 -24.83 2.46 -826.16 -2.03 -26.85 16 4 C 0.23 11.57 4.23 85.63 0.36 11.93 16 5 C -0.53 -31.61 9.94 25.60 0.25 -31.36 16 6 H 0.04 2.39 8.06 -2.91 -0.02 2.37 16 7 C 0.01 0.85 5.47 84.65 0.46 1.31 16 8 N -0.94 -60.15 13.96 21.45 0.30 -59.85 16 9 Si 0.94 46.34 27.47 68.60 1.88 48.22 16 10 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 11 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.24 -10.98 6.54 99.48 0.65 -10.33 16 13 C 0.49 20.05 7.37 87.66 0.65 20.69 16 14 O -0.57 -30.15 13.54 17.16 0.23 -29.92 16 15 C -0.10 -2.64 3.76 29.85 0.11 -2.53 16 16 C -0.06 -1.72 2.60 -11.93 -0.03 -1.75 16 17 H 0.12 3.62 7.90 -2.39 -0.02 3.60 16 18 C -0.11 -2.06 5.67 -19.70 -0.11 -2.17 16 19 C -0.07 -0.70 10.03 22.18 0.22 -0.48 16 20 C -0.09 -0.62 10.06 22.32 0.22 -0.40 16 21 C -0.11 -1.02 9.99 22.26 0.22 -0.80 16 22 C 0.06 1.00 7.32 22.56 0.17 1.17 16 23 F -0.15 -2.70 17.27 44.97 0.78 -1.92 16 24 C 0.10 1.89 7.09 38.35 0.27 2.16 16 25 N -0.66 -15.91 5.89 -303.04 -1.78 -17.70 16 26 C 0.52 16.94 7.83 87.94 0.69 17.63 16 27 O -0.52 -22.54 15.96 17.13 0.27 -22.27 16 28 H 0.04 1.08 8.14 -2.39 -0.02 1.07 16 29 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.20 7.22 -2.39 -0.02 1.18 16 31 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 32 H 0.11 2.16 6.44 -2.39 -0.02 2.15 16 33 H 0.04 2.04 7.13 -2.39 -0.02 2.03 16 34 H 0.01 0.45 6.85 -2.39 -0.02 0.43 16 35 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 36 H 0.14 2.61 7.40 -2.38 -0.02 2.59 16 37 H 0.11 2.46 7.17 -2.39 -0.02 2.45 16 38 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 39 H 0.18 -0.08 8.06 -2.91 -0.02 -0.11 16 40 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 41 H 0.42 8.87 8.96 -92.70 -0.83 8.04 16 Total: -1.00 -88.52 348.81 4.58 -83.94 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.19 Total: 10.61 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: 4.74 Total: 15.74 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -3.51 Total: -104.40 kcal Atomic # 8 Polarization: -52.69 SS G_CDS: 0.51 Total: -52.18 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.78 Total: -1.92 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.88 Total: 48.22 kcal Total: -88.52 4.58 -83.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930464064.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.848 kcal (2) G-P(sol) polarization free energy of solvation -88.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds