Wall clock time and date at job start Tue Mar 31 2020 12:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47147 * 2 1 4 4 C 1.46506 * 119.99936 * 89.99619 * 3 2 1 5 5 C 1.50703 * 109.46877 * 90.00092 * 4 3 2 6 6 H 1.08005 * 119.99817 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00081 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99848 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00321 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46938 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47198 * 120.00527 * 9 7 5 12 12 H 1.48498 * 109.47360 * 240.00281 * 9 7 5 13 13 C 1.34773 * 120.00036 * 270.27655 * 3 2 1 14 14 O 1.21281 * 120.00220 * 179.72597 * 13 3 2 15 15 C 1.50706 * 120.00080 * 359.72107 * 13 3 2 16 16 C 1.52992 * 109.47274 * 180.02562 * 15 13 3 17 17 H 1.09000 * 110.45713 * 56.13404 * 16 15 13 18 18 C 1.51139 * 110.50746 * 178.88078 * 16 15 13 19 19 C 1.37742 * 132.82771 * 298.65119 * 18 16 15 20 20 C 1.38369 * 119.96093 * 179.97438 * 19 18 16 21 21 C 1.38313 * 119.84437 * 0.02797 * 20 19 18 22 22 C 1.38108 * 120.34511 * 359.97375 * 21 20 19 23 23 F 1.35098 * 119.95625 * 180.02562 * 22 21 20 24 24 C 1.38817 * 106.35472 * 118.64743 * 18 16 15 25 25 N 1.39648 * 110.23501 * 359.97438 * 24 18 16 26 26 C 1.34369 * 112.21579 * 0.02562 * 25 24 18 27 27 O 1.21296 * 126.44682 * 179.97438 * 26 25 24 28 28 H 1.09005 * 109.47395 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47272 * 300.00321 * 1 2 3 30 30 H 1.08997 * 109.47273 * 60.00010 * 1 2 3 31 31 H 1.08994 * 109.47531 * 239.99672 * 2 1 3 32 32 H 1.09005 * 109.46544 * 119.99607 * 2 1 3 33 33 H 1.09000 * 109.46803 * 209.99571 * 4 3 2 34 34 H 1.09000 * 109.47214 * 330.00364 * 4 3 2 35 35 H 0.96998 * 119.99944 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.46762 * 300.00389 * 15 13 3 37 37 H 1.08998 * 109.46924 * 59.99727 * 15 13 3 38 38 H 1.07999 * 120.01904 * 0.04295 * 19 18 16 39 39 H 1.07996 * 120.07235 * 180.02562 * 20 19 18 40 40 H 1.08005 * 119.82320 * 179.97438 * 21 20 19 41 41 H 0.96998 * 123.89340 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 1.2688 5 6 3.6857 1.8350 1.7039 6 1 4.3428 1.2309 1.0958 7 6 4.1493 2.3905 2.8775 8 7 3.3493 3.1266 3.6176 9 14 5.9133 2.0964 3.4172 10 1 6.6007 1.2403 2.4172 11 1 6.6214 3.3972 3.5249 12 1 5.9203 1.4182 4.7383 13 6 2.2377 2.0184 -1.1671 14 8 2.6372 3.1635 -1.1672 15 6 1.9865 1.3080 -2.4723 16 6 2.3120 2.2474 -3.6352 17 1 3.3370 2.6098 -3.5568 18 6 2.0941 1.5485 -4.9574 19 6 2.6642 0.4343 -5.5327 20 6 2.2543 0.0180 -6.7870 21 6 1.2729 0.7232 -7.4597 22 6 0.6993 1.8408 -6.8858 23 9 -0.2591 2.5234 -7.5497 24 6 1.1081 2.2658 -5.6209 25 7 0.6883 3.3453 -4.8407 26 6 1.3399 3.4076 -3.6672 27 8 1.1795 4.2375 -2.7972 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.0955 3.1411 1.1383 34 1 1.5816 1.6877 2.0284 35 1 3.6753 3.5170 4.4435 36 1 2.6203 0.4232 -2.5321 37 1 0.9397 1.0094 -2.5279 38 1 3.4298 -0.1146 -5.0046 39 1 2.6997 -0.8556 -7.2396 40 1 0.9535 0.3981 -8.4389 41 1 0.0052 3.9772 -5.1143 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930464065.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:01 Heat of formation + Delta-G solvation = -101.378869 kcal Electronic energy + Delta-G solvation = -26937.511628 eV Core-core repulsion = 22924.165001 eV Total energy + Delta-G solvation = -4013.346627 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -49.89574 -42.70223 -40.48773 -39.36046 -36.89867 -36.75261 -34.99931 -34.34706 -31.62780 -30.91767 -30.25447 -29.14279 -27.17752 -24.79474 -24.03898 -23.67468 -22.71358 -21.82197 -19.81788 -19.32141 -18.65332 -18.37797 -17.64935 -17.43886 -17.37327 -17.01417 -16.71285 -16.50102 -16.29301 -15.81243 -15.69815 -15.13486 -14.72335 -14.54685 -14.27844 -14.10620 -14.06277 -13.76156 -13.52282 -13.41497 -13.19221 -13.16322 -12.86759 -12.77175 -12.67650 -12.42433 -12.25878 -12.08593 -11.92125 -11.83920 -11.65634 -11.13988 -10.64025 -10.47321 -9.76311 -9.35087 -9.09064 -8.19952 -6.35520 0.02211 0.14262 1.36922 1.38712 1.40170 1.52017 1.83251 1.96016 2.31207 2.46203 2.64733 2.99734 3.08993 3.13091 3.29465 3.73010 3.81861 3.95853 3.99486 4.11806 4.21024 4.37401 4.44695 4.54574 4.55415 4.67611 4.78450 4.91629 4.97270 5.00098 5.03856 5.06382 5.25758 5.32924 5.39075 5.44903 5.53193 5.61581 5.66729 5.91322 5.95568 6.09342 6.73646 6.87504 6.90938 7.31552 7.60116 8.87465 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.020283 B = 0.003201 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.108784 B = 8746.160654 C = 8839.601138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.265 3.735 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.001 3.999 8 N -0.934 5.934 9 Si 0.972 3.028 10 H -0.260 1.260 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.483 3.517 14 O -0.572 6.572 15 C -0.101 4.101 16 C -0.062 4.062 17 H 0.123 0.877 18 C -0.112 4.112 19 C -0.063 4.063 20 C -0.095 4.095 21 C -0.111 4.111 22 C 0.060 3.940 23 F -0.150 7.150 24 C 0.094 3.906 25 N -0.659 5.659 26 C 0.517 3.483 27 O -0.516 6.516 28 H 0.099 0.901 29 H 0.031 0.969 30 H 0.052 0.948 31 H 0.111 0.889 32 H 0.073 0.927 33 H -0.014 1.014 34 H 0.016 0.984 35 H 0.265 0.735 36 H 0.147 0.853 37 H 0.109 0.891 38 H 0.166 0.834 39 H 0.180 0.820 40 H 0.169 0.831 41 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.304 -14.770 -25.304 29.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.022 4.022 3 N -0.339 5.339 4 C 0.143 3.857 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.796 3.204 10 H -0.184 1.184 11 H -0.212 1.212 12 H -0.195 1.195 13 C 0.271 3.729 14 O -0.451 6.451 15 C -0.141 4.141 16 C -0.084 4.084 17 H 0.140 0.860 18 C -0.115 4.115 19 C -0.081 4.081 20 C -0.114 4.114 21 C -0.130 4.130 22 C 0.038 3.962 23 F -0.129 7.129 24 C -0.003 4.003 25 N -0.303 5.303 26 C 0.305 3.695 27 O -0.389 6.389 28 H 0.118 0.882 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.129 0.871 32 H 0.091 0.909 33 H 0.004 0.996 34 H 0.034 0.966 35 H 0.074 0.926 36 H 0.165 0.835 37 H 0.128 0.872 38 H 0.184 0.816 39 H 0.198 0.802 40 H 0.187 0.813 41 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -4.175 -13.600 -24.551 28.375 hybrid contribution -0.138 1.577 0.822 1.784 sum -4.313 -12.023 -23.729 26.948 Atomic orbital electron populations 1.22176 0.95420 1.03435 1.01052 1.21766 0.94675 0.81382 1.04401 1.48235 1.64580 1.15090 1.06031 1.18617 0.95392 0.91084 0.80621 1.21768 0.97686 1.31675 1.06366 0.92185 1.25967 1.02695 0.94516 0.96567 1.70097 1.37912 1.34519 1.14861 0.85297 0.78659 0.77914 0.78490 1.18402 1.21161 1.19480 1.21279 0.78127 0.86777 0.86683 1.90752 1.46795 1.19754 1.87791 1.21531 1.05914 0.99067 0.87560 1.20360 1.01079 0.93317 0.93595 0.85982 1.19647 0.98815 0.98535 0.94522 1.20819 0.98819 0.93027 0.95438 1.21413 0.95855 1.00697 0.93422 1.21337 0.97128 0.92450 1.02104 1.17326 0.93473 0.96133 0.89262 1.91472 1.61869 1.79377 1.80134 1.18378 0.98466 0.90791 0.92714 1.43751 1.40358 1.28632 1.17569 1.20980 0.81734 0.86429 0.80364 1.90918 1.66557 1.40829 1.40550 0.88224 0.94975 0.92886 0.87138 0.90859 0.99565 0.96644 0.92583 0.83510 0.87234 0.81622 0.80225 0.81333 0.74567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.18 10.24 71.98 0.74 -3.44 16 2 C 0.10 2.98 5.93 86.38 0.51 3.49 16 3 N -0.61 -26.37 2.46 -826.13 -2.03 -28.40 16 4 C 0.26 15.01 5.17 85.63 0.44 15.45 16 5 C -0.54 -31.62 9.39 25.60 0.24 -31.38 16 6 H 0.06 3.42 7.81 -2.91 -0.02 3.40 16 7 C 0.00 0.04 5.46 84.65 0.46 0.50 16 8 N -0.93 -58.81 13.29 21.45 0.28 -58.52 16 9 Si 0.97 45.72 29.54 68.60 2.03 47.75 16 10 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 C 0.48 20.55 7.35 87.66 0.64 21.19 16 14 O -0.57 -31.27 13.19 18.75 0.25 -31.03 16 15 C -0.10 -2.66 3.79 29.85 0.11 -2.55 16 16 C -0.06 -1.66 2.63 -11.93 -0.03 -1.70 16 17 H 0.12 3.58 8.02 -2.39 -0.02 3.56 16 18 C -0.11 -2.04 5.67 -19.70 -0.11 -2.15 16 19 C -0.06 -0.62 10.03 22.18 0.22 -0.40 16 20 C -0.10 -0.58 10.06 22.32 0.22 -0.35 16 21 C -0.11 -1.04 9.99 22.26 0.22 -0.81 16 22 C 0.06 1.00 7.32 22.56 0.17 1.16 16 23 F -0.15 -2.85 17.27 44.97 0.78 -2.07 16 24 C 0.09 1.93 7.09 38.35 0.27 2.20 16 25 N -0.66 -16.90 5.89 -303.02 -1.78 -18.68 16 26 C 0.52 17.62 7.81 87.94 0.69 18.31 16 27 O -0.52 -23.89 15.54 18.71 0.29 -23.59 16 28 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.03 0.99 8.14 -2.39 -0.02 0.98 16 30 H 0.05 1.31 7.20 -2.39 -0.02 1.30 16 31 H 0.11 2.26 6.45 -2.39 -0.02 2.25 16 32 H 0.07 2.32 8.07 -2.38 -0.02 2.30 16 33 H -0.01 -0.93 7.41 -2.39 -0.02 -0.95 16 34 H 0.02 0.90 8.07 -2.39 -0.02 0.88 16 35 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 36 H 0.15 2.56 7.41 -2.39 -0.02 2.54 16 37 H 0.11 2.49 7.16 -2.39 -0.02 2.48 16 38 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 39 H 0.18 -0.22 8.06 -2.91 -0.02 -0.24 16 40 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 41 H 0.42 9.55 8.96 -92.71 -0.83 8.72 16 Total: -1.00 -89.52 351.77 4.86 -84.66 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.24 Total: 10.36 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: 4.80 Total: 19.53 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -3.53 Total: -105.61 kcal Atomic # 8 Polarization: -55.16 SS G_CDS: 0.54 Total: -54.62 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.78 Total: -2.07 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -89.52 4.86 -84.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930464065.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.719 kcal (2) G-P(sol) polarization free energy of solvation -89.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds