Wall clock time and date at job start Tue Mar 31 2020 13:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35651 * 116.99659 * 2 1 4 4 C 1.38631 * 120.14257 * 359.97438 * 3 2 1 5 5 C 1.38136 * 120.16013 * 180.02562 * 4 3 2 6 6 C 1.38413 * 120.43408 * 0.02562 * 5 4 3 7 7 C 1.38135 * 120.27070 * 359.74282 * 6 5 4 8 8 F 1.35095 * 120.08118 * 180.25544 * 7 6 5 9 9 C 1.39968 * 119.83247 * 0.50847 * 7 6 5 10 10 C 1.47389 * 120.20533 * 179.76604 * 9 7 6 11 11 O 1.21597 * 120.00440 * 269.72209 * 10 9 7 12 12 N 1.34783 * 119.99887 * 89.45513 * 10 9 7 13 13 C 1.46495 * 119.99958 * 180.27153 * 12 10 9 14 14 H 1.08996 * 115.52012 * 9.41716 * 13 12 10 15 15 C 1.53000 * 117.44229 * 223.99782 * 13 12 10 16 16 H 1.09001 * 119.54221 * 4.11938 * 15 13 12 17 17 C 1.57740 * 116.08363 * 161.57807 * 15 13 12 18 18 N 1.48140 * 104.61641 * 87.40851 * 17 15 13 19 19 C 1.36942 * 127.84175 * 139.76330 * 18 17 15 20 20 H 1.07998 * 119.99620 * 344.35891 * 19 18 17 21 21 C 1.38806 * 120.00281 * 164.35332 * 19 18 17 22 22 N 1.31620 * 120.00304 * 350.57216 * 21 19 18 23 23 Si 1.86804 * 120.00164 * 170.57337 * 21 19 18 24 24 H 1.48499 * 109.46782 * 90.00163 * 23 21 19 25 25 H 1.48495 * 109.47034 * 209.99933 * 23 21 19 26 26 H 1.48498 * 109.46913 * 330.00421 * 23 21 19 27 27 C 1.48149 * 104.32688 * 319.76297 * 18 17 15 28 28 C 1.53003 * 117.44248 * 154.83061 * 13 12 10 29 29 H 1.09005 * 119.53796 * 355.87987 * 28 13 12 30 30 H 1.09003 * 109.46880 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47325 * 300.00260 * 1 2 3 32 32 H 1.09001 * 109.47421 * 60.00166 * 1 2 3 33 33 H 1.08006 * 119.91990 * 0.05116 * 4 3 2 34 34 H 1.08000 * 119.78178 * 180.02562 * 5 4 3 35 35 H 1.08002 * 119.86304 * 180.02562 * 6 5 4 36 36 H 0.96998 * 119.99478 * 0.26929 * 12 10 9 37 37 H 1.08997 * 110.95663 * 328.34175 * 17 15 13 38 38 H 1.08999 * 109.85369 * 205.91333 * 17 15 13 39 39 H 0.96999 * 120.00721 * 179.97438 * 22 21 19 40 40 H 1.09000 * 110.40318 * 280.80501 * 27 18 17 41 41 H 1.08995 * 110.51002 * 158.42213 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2087 0.0000 4 6 1.2925 2.3732 -0.0005 5 6 1.9192 3.6042 -0.0011 6 6 3.3008 3.6876 -0.0016 7 6 4.0678 2.5388 0.0037 8 9 5.4160 2.6247 0.0084 9 6 3.4446 1.2855 -0.0011 10 6 4.2549 0.0544 -0.0006 11 8 4.5888 -0.4542 -1.0534 12 7 4.6305 -0.5048 1.1668 13 6 5.4409 -1.7251 1.1673 14 1 5.8325 -2.0291 0.1966 15 6 5.0476 -2.8324 2.1471 16 1 4.1526 -2.7163 2.7583 17 6 5.6177 -4.2697 1.8347 18 7 6.9416 -4.2991 2.4986 19 6 7.5108 -5.3336 3.1923 20 1 6.9017 -6.1623 3.5221 21 6 8.8703 -5.3173 3.4715 22 7 9.6454 -4.4099 2.9162 23 14 9.6002 -6.5830 4.6355 24 1 10.0258 -7.7780 3.8634 25 1 10.7753 -5.9977 5.3295 26 1 8.5795 -6.9795 5.6386 27 6 7.5105 -2.9555 2.2418 28 6 6.3150 -1.9907 2.3947 29 1 6.3642 -1.2472 3.1904 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 0.2139 2.3178 -0.0001 34 1 1.3272 4.5075 -0.0011 35 1 3.7812 4.6549 -0.0016 36 1 4.3641 -0.0991 2.0067 37 1 5.7275 -4.4205 0.7608 38 1 4.9618 -5.0287 2.2610 39 1 10.5954 -4.3982 3.1115 40 1 7.9159 -2.9012 1.2315 41 1 8.2835 -2.7219 2.9738 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960058025.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:48 Heat of formation + Delta-G solvation = -20.130635 kcal Electronic energy + Delta-G solvation = -26306.945263 eV Core-core repulsion = 22297.121824 eV Total energy + Delta-G solvation = -4009.823439 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.23793 -40.78172 -39.42302 -38.13334 -37.48637 -34.40673 -32.72442 -31.58141 -30.36705 -30.08577 -27.80064 -26.97513 -25.73984 -24.37495 -22.65123 -21.85404 -20.60732 -20.29925 -19.26041 -18.85446 -17.60975 -17.40464 -16.82468 -16.54926 -16.37736 -16.04032 -15.68958 -15.51139 -15.02412 -14.69393 -14.24594 -14.21738 -13.59793 -13.22595 -13.18871 -12.86873 -12.82701 -12.69890 -12.22455 -12.18491 -11.75174 -11.49530 -11.46615 -11.44121 -10.96111 -10.80862 -10.32581 -10.17207 -10.14024 -9.92583 -9.70092 -9.29662 -9.15740 -8.76515 -8.71014 -8.27898 -6.84017 -5.77233 -3.11378 0.53560 0.79734 2.53977 2.65620 2.96911 3.19357 3.40281 3.45323 3.47517 3.92500 4.24463 4.35258 4.48269 4.49307 4.57885 4.63734 4.74584 4.81065 4.83932 5.11992 5.21681 5.38288 5.41809 5.44653 5.56101 5.61213 5.62884 5.78027 5.81376 5.90698 6.19258 6.20391 6.27777 6.55816 6.72641 6.80792 6.85059 6.93401 7.38684 7.56213 7.58559 7.74168 8.22888 8.25995 9.13221 9.76169 10.53621 11.37239 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024011 B = 0.002739 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.854086 B =10220.904586 C =10977.495207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.301 6.301 3 C 0.192 3.808 4 C -0.224 4.224 5 C -0.035 4.035 6 C -0.194 4.194 7 C 0.174 3.826 8 F -0.121 7.121 9 C -0.196 4.196 10 C 0.577 3.423 11 O -0.523 6.523 12 N -0.685 5.685 13 C 0.093 3.907 14 H 0.132 0.868 15 C -0.183 4.183 16 H 0.107 0.893 17 C 0.158 3.842 18 N -0.593 5.593 19 C -0.227 4.227 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.914 5.914 23 Si 0.913 3.087 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.186 3.814 28 C -0.179 4.179 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.399 0.601 37 H 0.031 0.969 38 H 0.050 0.950 39 H 0.255 0.745 40 H 0.027 0.973 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.544 18.192 -3.992 27.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.213 6.213 3 C 0.144 3.856 4 C -0.243 4.243 5 C -0.053 4.053 6 C -0.213 4.213 7 C 0.154 3.846 8 F -0.099 7.099 9 C -0.201 4.201 10 C 0.362 3.638 11 O -0.398 6.398 12 N -0.332 5.332 13 C -0.012 4.012 14 H 0.150 0.850 15 C -0.205 4.205 16 H 0.125 0.875 17 C 0.031 3.969 18 N -0.316 5.316 19 C -0.355 4.355 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.560 5.560 23 Si 0.743 3.257 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.060 3.940 28 C -0.200 4.200 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.233 0.767 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.045 0.955 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.909 17.482 -4.653 26.901 hybrid contribution 0.180 -0.097 1.094 1.113 sum -19.729 17.385 -3.559 26.536 Atomic orbital electron populations 1.23205 0.77285 1.04831 1.01601 1.86147 1.22168 1.25812 1.87177 1.18588 0.89753 0.85188 0.92062 1.21250 1.00697 0.91710 1.10612 1.20888 0.93447 0.97539 0.93465 1.21004 0.94318 0.97594 1.08424 1.17300 0.77318 0.92187 0.97817 1.91590 1.28409 1.96864 1.93038 1.19145 0.91942 0.93718 1.15317 1.17582 0.79012 0.82945 0.84273 1.90816 1.54889 1.62924 1.31190 1.45336 1.52965 1.27016 1.07894 1.21919 0.96864 0.85121 0.97326 0.84998 1.25075 0.98447 0.93946 1.02994 0.87549 1.21704 0.88391 0.91241 0.95573 1.45121 1.14836 1.10744 1.60915 1.18977 0.90864 0.98788 1.26902 0.90544 1.24904 0.95718 0.99046 1.00609 1.69901 1.04448 1.36516 1.45169 0.86117 0.78590 0.80545 0.80465 1.21433 1.21563 1.20598 1.21057 0.91244 0.81823 0.99891 1.24618 0.96040 1.01315 0.98052 0.88085 0.87554 0.92129 0.92139 0.84151 0.84201 0.83838 0.76726 0.95118 0.93127 0.93522 0.95538 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.30 -3.36 9.95 -18.65 -0.19 -3.55 16 3 C 0.19 2.09 6.70 -38.70 -0.26 1.83 16 4 C -0.22 -1.64 9.03 -39.47 -0.36 -2.00 16 5 C -0.04 -0.22 10.02 -39.55 -0.40 -0.62 16 6 C -0.19 -1.60 10.01 -39.55 -0.40 -1.99 16 7 C 0.17 2.06 7.29 -38.97 -0.28 1.78 16 8 F -0.12 -1.66 16.83 2.25 0.04 -1.62 16 9 C -0.20 -2.61 5.64 -104.79 -0.59 -3.20 16 10 C 0.58 9.72 6.43 -12.53 -0.08 9.63 16 11 O -0.52 -10.90 16.67 5.28 0.09 -10.81 16 12 N -0.68 -10.71 5.56 -54.90 -0.31 -11.01 16 13 C 0.09 1.71 5.93 -67.93 -0.40 1.31 16 14 H 0.13 2.73 7.40 -51.93 -0.38 2.34 16 15 C -0.18 -3.42 7.33 -87.43 -0.64 -4.06 16 16 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 17 C 0.16 3.45 7.10 -0.55 0.00 3.45 16 18 N -0.59 -15.55 3.38 -166.71 -0.56 -16.11 16 19 C -0.23 -6.42 10.35 -15.06 -0.16 -6.57 16 20 H 0.08 2.08 7.85 -52.49 -0.41 1.66 16 21 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 22 N -0.91 -27.15 10.88 55.49 0.60 -26.55 16 23 Si 0.91 22.12 29.56 -169.99 -5.03 17.09 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C 0.19 4.61 5.69 -2.41 -0.01 4.59 16 28 C -0.18 -3.54 6.97 -89.29 -0.62 -4.16 16 29 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 30 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 32 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 33 H 0.14 0.62 6.29 -52.48 -0.33 0.29 16 34 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 35 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.40 5.15 8.81 -40.82 -0.36 4.79 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 2.48 6.53 -51.93 -0.34 2.14 16 LS Contribution 353.33 15.07 5.32 5.32 Total: -1.00 -34.91 353.33 -8.47 -43.38 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.14 Total: 2.97 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -3.31 Total: 0.87 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -0.26 Total: -53.67 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.10 Total: -14.35 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.91 -8.47 -43.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960058025.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.253 kcal (2) G-P(sol) polarization free energy of solvation -34.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds